CuGenDBv2

Gene ID	Pay0006044
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	CCHC-type domain-containing protein
Genome location	chr12:5697947..5699810
RNA-Seq Expression	Pay0006044
Synteny	Pay0006044
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR005162 - Retrotransposon gag domain IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]

2.7e-128

87.23

Show/hide

Query:  MERVHEDRDGGVKLKIPPYTETVDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTSHAGNWYQHLKSERRRKEEDSIETWEELEDAMRKRLC-----
        MERVHEDRDGGVKLKIPP+T T DSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFT++A  WY +LKSERRRKEED IETWEEL++AMRKR       
Subjt:  MERVHEDRDGGVKLKIPPYTETVDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTSHAGNWYQHLKSERRRKEEDSIETWEELEDAMRKRLC-----

Query:  -------------TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYNIEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT
                     TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYN+EDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT
Subjt:  -------------TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYNIEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT

Query:  WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCQGFGHMSKDCINKRVMVVRNG
        WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKK EASKEVREKTSSIQCWKC+GFGHMSKDCINKRVMVVRNG
Subjt:  WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCQGFGHMSKDCINKRVMVVRNG

TYK04936.1 F15O4.13 [Cucumis melo var. makuwa]

2.7e-128

87.23

Show/hide

Query:  MERVHEDRDGGVKLKIPPYTETVDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTSHAGNWYQHLKSERRRKEEDSIETWEELEDAMRKRLC-----
        MERVHEDRDGGVKLKIPP+T T DSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFT++A  WY +LKSERRRKEED IETWEEL++AMRKR       
Subjt:  MERVHEDRDGGVKLKIPPYTETVDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTSHAGNWYQHLKSERRRKEEDSIETWEELEDAMRKRLC-----

Query:  -------------TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYNIEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT
                     TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYN+EDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT
Subjt:  -------------TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYNIEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT

Query:  WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCQGFGHMSKDCINKRVMVVRNG
        WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKK EASKEVREKTSSIQCWKC+GFGHMSKDCINKRVMVVRNG
Subjt:  WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCQGFGHMSKDCINKRVMVVRNG

TYK11702.1 F15O4.13 [Cucumis melo var. makuwa]

2.7e-128

87.23

Show/hide

Query:  MERVHEDRDGGVKLKIPPYTETVDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTSHAGNWYQHLKSERRRKEEDSIETWEELEDAMRKRLC-----
        MERVHEDRDGGVKLKIPP+T T DSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFT++A  WY +LKSERRRKEED IETWEEL++AMRKR       
Subjt:  MERVHEDRDGGVKLKIPPYTETVDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTSHAGNWYQHLKSERRRKEEDSIETWEELEDAMRKRLC-----

Query:  -------------TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYNIEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT
                     TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYN+EDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT
Subjt:  -------------TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYNIEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT

Query:  WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCQGFGHMSKDCINKRVMVVRNG
        WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKK EASKEVREKTSSIQCWKC+GFGHMSKDCINKRVMVVRNG
Subjt:  WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCQGFGHMSKDCINKRVMVVRNG

TYK22420.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

2.7e-128

87.23

Show/hide

Query:  MERVHEDRDGGVKLKIPPYTETVDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTSHAGNWYQHLKSERRRKEEDSIETWEELEDAMRKRLC-----
        MERVHEDRDGGVKLKIPP+T T DSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFT++A  WY +LKSERRRKEED IETWEEL++AMRKR       
Subjt:  MERVHEDRDGGVKLKIPPYTETVDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTSHAGNWYQHLKSERRRKEEDSIETWEELEDAMRKRLC-----

Query:  -------------TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYNIEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT
                     TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYN+EDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT
Subjt:  -------------TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYNIEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT

Query:  WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCQGFGHMSKDCINKRVMVVRNG
        WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKK EASKEVREKTSSIQCWKC+GFGHMSKDCINKRVMVVRNG
Subjt:  WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCQGFGHMSKDCINKRVMVVRNG

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]

2.7e-128

87.23

Show/hide

Query:  MERVHEDRDGGVKLKIPPYTETVDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTSHAGNWYQHLKSERRRKEEDSIETWEELEDAMRKRLC-----
        MERVHEDRDGGVKLKIPP+T T DSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFT++A  WY +LKSERRRKEED IETWEEL++AMRKR       
Subjt:  MERVHEDRDGGVKLKIPPYTETVDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTSHAGNWYQHLKSERRRKEEDSIETWEELEDAMRKRLC-----

Query:  -------------TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYNIEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT
                     TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYN+EDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT
Subjt:  -------------TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYNIEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT

Query:  WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCQGFGHMSKDCINKRVMVVRNG
        WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKK EASKEVREKTSSIQCWKC+GFGHMSKDCINKRVMVVRNG
Subjt:  WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCQGFGHMSKDCINKRVMVVRNG

TrEMBL top hits

e value

%identity

Alignment

A0A5D3BWE8 F15O4.13

1.3e-128

87.23

Show/hide

Query:  MERVHEDRDGGVKLKIPPYTETVDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTSHAGNWYQHLKSERRRKEEDSIETWEELEDAMRKRLC-----
        MERVHEDRDGGVKLKIPP+T T DSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFT++A  WY +LKSERRRKEED IETWEEL++AMRKR       
Subjt:  MERVHEDRDGGVKLKIPPYTETVDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTSHAGNWYQHLKSERRRKEEDSIETWEELEDAMRKRLC-----

Query:  -------------TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYNIEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT
                     TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYN+EDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT
Subjt:  -------------TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYNIEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT

Query:  WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCQGFGHMSKDCINKRVMVVRNG
        WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKK EASKEVREKTSSIQCWKC+GFGHMSKDCINKRVMVVRNG
Subjt:  WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCQGFGHMSKDCINKRVMVVRNG

A0A5D3C3D3 F15O4.13

1.3e-128

87.23

Show/hide

Query:  MERVHEDRDGGVKLKIPPYTETVDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTSHAGNWYQHLKSERRRKEEDSIETWEELEDAMRKRLC-----
        MERVHEDRDGGVKLKIPP+T T DSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFT++A  WY +LKSERRRKEED IETWEEL++AMRKR       
Subjt:  MERVHEDRDGGVKLKIPPYTETVDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTSHAGNWYQHLKSERRRKEEDSIETWEELEDAMRKRLC-----

Query:  -------------TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYNIEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT
                     TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYN+EDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT
Subjt:  -------------TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYNIEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT

Query:  WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCQGFGHMSKDCINKRVMVVRNG
        WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKK EASKEVREKTSSIQCWKC+GFGHMSKDCINKRVMVVRNG
Subjt:  WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCQGFGHMSKDCINKRVMVVRNG

A0A5D3CK70 F15O4.13

1.3e-128

87.23

Show/hide

Query:  MERVHEDRDGGVKLKIPPYTETVDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTSHAGNWYQHLKSERRRKEEDSIETWEELEDAMRKRLC-----
        MERVHEDRDGGVKLKIPP+T T DSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFT++A  WY +LKSERRRKEED IETWEEL++AMRKR       
Subjt:  MERVHEDRDGGVKLKIPPYTETVDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTSHAGNWYQHLKSERRRKEEDSIETWEELEDAMRKRLC-----

Query:  -------------TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYNIEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT
                     TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYN+EDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT
Subjt:  -------------TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYNIEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT

Query:  WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCQGFGHMSKDCINKRVMVVRNG
        WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKK EASKEVREKTSSIQCWKC+GFGHMSKDCINKRVMVVRNG
Subjt:  WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCQGFGHMSKDCINKRVMVVRNG

A0A5D3DGA7 Transposon Ty3-I Gag-Pol polyprotein

1.3e-128

87.23

Show/hide

Query:  MERVHEDRDGGVKLKIPPYTETVDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTSHAGNWYQHLKSERRRKEEDSIETWEELEDAMRKRLC-----
        MERVHEDRDGGVKLKIPP+T T DSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFT++A  WY +LKSERRRKEED IETWEEL++AMRKR       
Subjt:  MERVHEDRDGGVKLKIPPYTETVDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTSHAGNWYQHLKSERRRKEEDSIETWEELEDAMRKRLC-----

Query:  -------------TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYNIEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT
                     TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYN+EDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT
Subjt:  -------------TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYNIEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT

Query:  WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCQGFGHMSKDCINKRVMVVRNG
        WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKK EASKEVREKTSSIQCWKC+GFGHMSKDCINKRVMVVRNG
Subjt:  WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCQGFGHMSKDCINKRVMVVRNG

A0A5D3DRJ1 F15O4.13

1.3e-128

87.23

Show/hide

Query:  MERVHEDRDGGVKLKIPPYTETVDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTSHAGNWYQHLKSERRRKEEDSIETWEELEDAMRKRLC-----
        MERVHEDRDGGVKLKIPP+T T DSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFT++A  WY +LKSERRRKEED IETWEEL++AMRKR       
Subjt:  MERVHEDRDGGVKLKIPPYTETVDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTSHAGNWYQHLKSERRRKEEDSIETWEELEDAMRKRLC-----

Query:  -------------TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYNIEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT
                     TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYN+EDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT
Subjt:  -------------TKSVAEYYREMETLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYNIEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNT

Query:  WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCQGFGHMSKDCINKRVMVVRNG
        WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKK EASKEVREKTSSIQCWKC+GFGHMSKDCINKRVMVVRNG
Subjt:  WNKDGFVNRNESMQSRGKFVAAQKVETESSNTKKVEASKEVREKTSSIQCWKCQGFGHMSKDCINKRVMVVRNG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAAAGAGTGCATGAAGATAGAGATGGAGGAGTCAAACTCAAGATTCCACCTTATACTGAAACGGTGGATTCAGAGACATATTTGCAATGGGAAAGGAAGATA
GAACATGTGTTTGATTGCAACACATTTAGTGAGAATAAGAAGATGAAACTTGCCATTGCCGAATTCACTAGTCATGCTGGAAATTGGTATCAACATCTCAAATCT
GAAAGAAGAAGGAAAGAGGAAGATTCCATCGAAACGTGGGAAGAACTTGAAGATGCTATGAGAAAAAGATTATGTACAAAAAGTGTTGCTGAATATTATCGAGAG
ATGGAGACTTTGATAGGAAGAGCAAGAATCCAAGAAGATGAGGAAGACACCATGTCTAGGTTCCTTGGAGGGTTGAATCAAGAAATTGCTCATCTTGTTGATAGA
AATCCACCATATAATATAGAAGATATGTATCATTATGCTATCAAAATTGAAGCTCAATTGAAGGAAGAAAAGGAGCGTTCAAAAAGGTATGTGTCTAAAACTCAC
ACCTTTTCAAGTTCTAATACATGGAACAAGGATGGTTTTGTGAATAGGAATGAATCAATGCAATCAAGGGGGAAATTTGTGGCTGCCCAAAAAGTAGAGACCGAG
AGCTCTAATACTAAGAAGGTTGAAGCTTCAAAGGAGGTAAGGGAGAAGACTAGTTCTATTCAATGTTGGAAGTGCCAAGGGTTTGGACATATGAGTAAAGATTGT
ATCAATAAAAGAGTCATGGTGGTGAGAAATGGTGGATTGAACATCAAATTGACTTCATACCAGGGCAACTCTTCCAAATATGGCTGCCTACAGAACCAATCTAAC
CAAGGCCAAAGAGATTTAAAGGCAAGTAGAAGAACTCGTTGGACAAAGGTTATGTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MERVHEDRDGGVKLKIPPYTETVDSETYLQWERKIEHVFDCNTFSENKKMKLAIAEFTSHAGNWYQHLKSERRRKEEDSIETWEELEDAMRKRLCTKSVAEYYRE
METLIGRARIQEDEEDTMSRFLGGLNQEIAHLVDRNPPYNIEDMYHYAIKIEAQLKEEKERSKRYVSKTHTFSSSNTWNKDGFVNRNESMQSRGKFVAAQKVETE
SSNTKKVEASKEVREKTSSIQCWKCQGFGHMSKDCINKRVMVVRNGGLNIKLTSYQGNSSKYGCLQNQSNQGQRDLKASRRTRWTKVM

Pay0006044 (gene) of Melon (Payzawat) v1 genome