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Pay0006393 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0006393
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionReverse transcriptase
Genome locationchr06:23668082..23668972
RNA-Seq ExpressionPay0006393
SyntenyPay0006393
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060369.1 putative mitochondrial protein [Cucumis melo var. makuwa]5.2e-7786.93Show/hide
Query:  MNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAK-STQWGLCVVSE-----------KKLDISSSLE
        MNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAK   ++ L +V++            KLD+SSSLE
Subjt:  MNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAK-STQWGLCVVSE-----------KKLDISSSLE

Query:  EHQVYLQSVFDKNRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYY
        EHQVYLQSVFDKNRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYY
Subjt:  EHQVYLQSVFDKNRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYY

TYK22110.1 reverse transcriptase [Cucumis melo var. makuwa]8.4e-5973.33Show/hide
Query:  MNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAK-STQWGLCVVSE-----------KKLDISSSLE
        MNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAK   ++ L +V++            KLD+ S   
Subjt:  MNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAK-STQWGLCVVSE-----------KKLDISSSLE

Query:  EHQVYLQSVFDK----NRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYY
        + Q+  Q    K     R       KEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYY
Subjt:  EHQVYLQSVFDK----NRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYY

XP_016900833.1 PREDICTED: uncharacterized protein LOC107991048 [Cucumis melo]1.7e-99100Show/hide
Query:  MVIPLVDEQIETRIVPVEIQKVMNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAKSTQWGLCVVSE
        MVIPLVDEQIETRIVPVEIQKVMNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAKSTQWGLCVVSE
Subjt:  MVIPLVDEQIETRIVPVEIQKVMNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAKSTQWGLCVVSE

Query:  KKLDISSSLEEHQVYLQSVFDKNRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYYR
        KKLDISSSLEEHQVYLQSVFDKNRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYYR
Subjt:  KKLDISSSLEEHQVYLQSVFDKNRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYYR

XP_022150099.1 uncharacterized protein LOC111018360 [Momordica charantia]1.8e-4542.28Show/hide
Query:  MVIPLVDEQIETRIVPVEIQKVMNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAKSTQWGLCVVSE
        M IP+V++ +ETR VP EIQ VM EYVD MP  LPK+LPPRRGIDHEIEL+P AKPPAKNAYRMAP ELAELRKQLDELL A FIRPAK+  +G  V+ +
Subjt:  MVIPLVDEQIETRIVPVEIQKVMNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAKSTQWGLCVVSE

Query:  KKLD------------------------------------------------------------------------------------------------
        KK D                                                                                                
Subjt:  KKLD------------------------------------------------------------------------------------------------

Query:  ---------------ISSSLEEHQVYLQSVFDKNRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYYR
                        S +L+EHQ++L+ VFDK R N LY+KKEK  FA++ I FL H+IE  +I MD DK++AI+EW  PTS+ ELRSFLGLANYYR
Subjt:  ---------------ISSSLEEHQVYLQSVFDKNRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYYR

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]1.6e-4645.7Show/hide
Query:  MVIPLVDEQIETRIVPVEIQKVMNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAKSTQWGLCVVSE
        M IP+ + +    +VP EIQ+V+  Y D MP  LPK+LPPR GIDHEIEL+P AKPPAKNAYRMAP ELAELRKQLDELL A FIRPAK+  +G  V+ +
Subjt:  MVIPLVDEQIETRIVPVEIQKVMNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAKSTQWGLCVVSE

Query:  KKLD---------------------------------------------------------------------ISSSLEEHQVYLQSVFDKNRHNHLYMK
        KK D                                                                      S ++EEHQV+LQ VF+K + N LY+K
Subjt:  KKLD---------------------------------------------------------------------ISSSLEEHQVYLQSVFDKNRHNHLYMK

Query:  KEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYYR
        +EK  FA++ I+FL H+IEC +I M++ K++AI+EW+ PTS+TELRSFLGLANYYR
Subjt:  KEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYYR

TrEMBL top hitse value%identityAlignment
A0A1S4DXY2 uncharacterized protein LOC1079910488.1e-100100Show/hide
Query:  MVIPLVDEQIETRIVPVEIQKVMNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAKSTQWGLCVVSE
        MVIPLVDEQIETRIVPVEIQKVMNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAKSTQWGLCVVSE
Subjt:  MVIPLVDEQIETRIVPVEIQKVMNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAKSTQWGLCVVSE

Query:  KKLDISSSLEEHQVYLQSVFDKNRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYYR
        KKLDISSSLEEHQVYLQSVFDKNRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYYR
Subjt:  KKLDISSSLEEHQVYLQSVFDKNRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYYR

A0A5A7V3M6 Putative mitochondrial protein2.5e-7786.93Show/hide
Query:  MNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAK-STQWGLCVVSE-----------KKLDISSSLE
        MNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAK   ++ L +V++            KLD+SSSLE
Subjt:  MNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAK-STQWGLCVVSE-----------KKLDISSSLE

Query:  EHQVYLQSVFDKNRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYY
        EHQVYLQSVFDKNRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYY
Subjt:  EHQVYLQSVFDKNRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYY

A0A5D3DFE2 Reverse transcriptase4.1e-5973.33Show/hide
Query:  MNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAK-STQWGLCVVSE-----------KKLDISSSLE
        MNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAK   ++ L +V++            KLD+ S   
Subjt:  MNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAK-STQWGLCVVSE-----------KKLDISSSLE

Query:  EHQVYLQSVFDK----NRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYY
        + Q+  Q    K     R       KEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYY
Subjt:  EHQVYLQSVFDK----NRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYY

A0A6J1D906 Reverse transcriptase8.8e-4642.28Show/hide
Query:  MVIPLVDEQIETRIVPVEIQKVMNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAKSTQWGLCVVSE
        M IP+V++ +ETR VP EIQ VM EYVD MP  LPK+LPPRRGIDHEIEL+P AKPPAKNAYRMAP ELAELRKQLDELL A FIRPAK+  +G  V+ +
Subjt:  MVIPLVDEQIETRIVPVEIQKVMNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAKSTQWGLCVVSE

Query:  KKLD------------------------------------------------------------------------------------------------
        KK D                                                                                                
Subjt:  KKLD------------------------------------------------------------------------------------------------

Query:  ---------------ISSSLEEHQVYLQSVFDKNRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYYR
                        S +L+EHQ++L+ VFDK R N LY+KKEK  FA++ I FL H+IE  +I MD DK++AI+EW  PTS+ ELRSFLGLANYYR
Subjt:  ---------------ISSSLEEHQVYLQSVFDKNRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYYR

A0A6J1DLQ6 uncharacterized protein LOC1110223207.9e-4745.7Show/hide
Query:  MVIPLVDEQIETRIVPVEIQKVMNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAKSTQWGLCVVSE
        M IP+ + +    +VP EIQ+V+  Y D MP  LPK+LPPR GIDHEIEL+P AKPPAKNAYRMAP ELAELRKQLDELL A FIRPAK+  +G  V+ +
Subjt:  MVIPLVDEQIETRIVPVEIQKVMNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAKSTQWGLCVVSE

Query:  KKLD---------------------------------------------------------------------ISSSLEEHQVYLQSVFDKNRHNHLYMK
        KK D                                                                      S ++EEHQV+LQ VF+K + N LY+K
Subjt:  KKLD---------------------------------------------------------------------ISSSLEEHQVYLQSVFDKNRHNHLYMK

Query:  KEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYYR
        +EK  FA++ I+FL H+IEC +I M++ K++AI+EW+ PTS+TELRSFLGLANYYR
Subjt:  KEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYYR

SwissProt top hitse value%identityAlignment
P10401 Retrovirus-related Pol polyprotein from transposon gypsy1.6e-0430.49Show/hide
Query:  SSSLEEHQVYLQSVFDKNRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYYR
        S +  +H  ++ +V       ++ + +EK  F K+ + +L  I+  +  + D +K++AI+E+  P  + ++RSFLGLA+YYR
Subjt:  SSSLEEHQVYLQSVFDKNRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYYR

Q09575 Uncharacterized protein K02A2.65.5e-0531.52Show/hide
Query:  GLCVVSEKKLDISSSLEEHQVYLQSVFDKNRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANY
        G+ V  +  +  +SS+EEH+  L+ +F++ +     +  EK  FA++ + FL  + E  + + D  K +AI+  +APT   +L SFLG A++
Subjt:  GLCVVSEKKLDISSSLEEHQVYLQSVFDKNRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANY

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein2.0e-0728.86Show/hide
Query:  HEIELVPKAK-------PPAKNAYRMAPHELAELRKQLDELLAARFIRPAKSTQWGLCVVSEKKLDISSSLEEHQVYLQSVFDKNRHNHLYMKKEKRVFA
        H+I + PK +       P  K  Y + P  L          +A  F R  +       V  +  L  S S EEH  +L +V ++ ++ +L +KK+K  FA
Subjt:  HEIELVPKAK-------PPAKNAYRMAPHELAELRKQLDELLAARFIRPAKSTQWGLCVVSEKKLDISSSLEEHQVYLQSVFDKNRHNHLYMKKEKRVFA

Query:  KQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYYR
         +   FL + I  +KI   + K  AI+++  P ++ + + FLG+ NYYR
Subjt:  KQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYYR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus4.2e-0534.15Show/hide
Query:  SSSLEEHQVYLQSVFDKNRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYYR
        S   + H   L+ V       +L +  EK  F    + FL +I+  + I+ D  K++AI E   PTS+ EL+ FLG+ +YYR
Subjt:  SSSLEEHQVYLQSVFDKNRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYYR

Q99315 Transposon Ty3-G Gag-Pol polyprotein2.0e-0728.86Show/hide
Query:  HEIELVPKAK-------PPAKNAYRMAPHELAELRKQLDELLAARFIRPAKSTQWGLCVVSEKKLDISSSLEEHQVYLQSVFDKNRHNHLYMKKEKRVFA
        H+I + PK +       P  K  Y + P  L          +A  F R  +       V  +  L  S S EEH  +L +V ++ ++ +L +KK+K  FA
Subjt:  HEIELVPKAK-------PPAKNAYRMAPHELAELRKQLDELLAARFIRPAKSTQWGLCVVSEKKLDISSSLEEHQVYLQSVFDKNRHNHLYMKKEKRVFA

Query:  KQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYYR
         +   FL + I  +KI   + K  AI+++  P ++ + + FLG+ NYYR
Subjt:  KQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYYR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCATCCCATTGGTGGATGAGCAAATTGAAACTAGGATTGTTCCAGTAGAGATCCAAAAAGTTATGAATGAATATGTTGATGGAATGCCTCATGAACTGCCA
AAGTCACTACCTCCTCGACGAGGGATTGATCACGAGATTGAGCTTGTACCAAAAGCCAAACCCCCAGCAAAGAACGCTTACAGAATGGCTCCACATGAGCTAGCT
GAGCTCAGAAAACAGTTAGATGAGTTGTTAGCTGCTAGATTCATCAGACCTGCCAAAAGTACCCAATGGGGCCTTTGTGTTGTTTCAGAAAAAAAATTGGACATT
TCTTCAAGTCTTGAAGAACACCAAGTCTATCTTCAATCAGTTTTTGACAAAAACCGACATAATCATTTATATATGAAGAAAGAGAAGCGTGTTTTTGCTAAACAG
CATATCAACTTTCTGGATCACATCATTGAATGCGAAAAGATTCAAATGGACGAAGATAAGCTGCAGGCTATTAAGGAGTGGGAAGCCCCTACTTCCCTGACAGAG
TTACGTTCCTTCCTTGGATTGGCTAATTATTATCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTCATCCCATTGGTGGATGAGCAAATTGAAACTAGGATTGTTCCAGTAGAGATCCAAAAAGTTATGAATGAATATGTTGATGGAATGCCTCATGAACTGCCA
AAGTCACTACCTCCTCGACGAGGGATTGATCACGAGATTGAGCTTGTACCAAAAGCCAAACCCCCAGCAAAGAACGCTTACAGAATGGCTCCACATGAGCTAGCT
GAGCTCAGAAAACAGTTAGATGAGTTGTTAGCTGCTAGATTCATCAGACCTGCCAAAAGTACCCAATGGGGCCTTTGTGTTGTTTCAGAAAAAAAATTGGACATT
TCTTCAAGTCTTGAAGAACACCAAGTCTATCTTCAATCAGTTTTTGACAAAAACCGACATAATCATTTATATATGAAGAAAGAGAAGCGTGTTTTTGCTAAACAG
CATATCAACTTTCTGGATCACATCATTGAATGCGAAAAGATTCAAATGGACGAAGATAAGCTGCAGGCTATTAAGGAGTGGGAAGCCCCTACTTCCCTGACAGAG
TTACGTTCCTTCCTTGGATTGGCTAATTATTATCGTTAG
Protein sequenceShow/hide protein sequence
MVIPLVDEQIETRIVPVEIQKVMNEYVDGMPHELPKSLPPRRGIDHEIELVPKAKPPAKNAYRMAPHELAELRKQLDELLAARFIRPAKSTQWGLCVVSEKKLDI
SSSLEEHQVYLQSVFDKNRHNHLYMKKEKRVFAKQHINFLDHIIECEKIQMDEDKLQAIKEWEAPTSLTELRSFLGLANYYR