CuGenDBv2

Gene ID	Pay0006476
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrotransposon protein
Genome location	chr04:8141797..8142904
RNA-Seq Expression	Pay0006476
Synteny	Pay0006476
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]

9.5e-89

58.23

Show/hide

Query:  MDRRHFAILCHLLRIIAGLTLTEVIDVEEMVAMFFHILTHDVKNRVLQRKFMRSGETLSRHFNMVFFVVIRLHDELLKKSQPVPNDCTYQRWRWFENCLC
        MDRR FAILCHLLR IAGLT TEV+DVEEMVAMF HIL HDVKNRV+QR+FMRSGET+SRHFNMV   VIRLH+ELLKK QPVPN+CT QRWRWFENCL 
Subjt:  MDRRHFAILCHLLRIIAGLTLTEVIDVEEMVAMFFHILTHDVKNRVLQRKFMRSGETLSRHFNMVFFVVIRLHDELLKKSQPVPNDCTYQRWRWFENCLC

Query:  ALDGTYIKVNVPTSDRARYRTRKGRSPQMSL-----------------------------------------------ACYPNVEGFLASYRGQRYHLQQ
        ALDGTYIKVNVP SDRARYRTRKG      L                                               A YPN EGFLA YRGQRYHLQ+
Subjt:  ALDGTYIKVNVPTSDRARYRTRKGRSPQMSL-----------------------------------------------ACYPNVEGFLASYRGQRYHLQQ

Query:  WSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILK-----------------------------------------DNIDEVHSTHATTTADDIHYIKTSN
        W G +NAP TSKEFFNMKHSSA NVIER F +LK                                         DNIDEV STHATT ADDIHYI+TSN
Subjt:  WSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILK-----------------------------------------DNIDEVHSTHATTTADDIHYIKTSN

Query:  EWTQLRDDFAEEIFTE
        EW+Q RD+ AEE+FTE
Subjt:  EWTQLRDDFAEEIFTE

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]

3.3e-89

58.54

Show/hide

Query:  MDRRHFAILCHLLRIIAGLTLTEVIDVEEMVAMFFHILTHDVKNRVLQRKFMRSGETLSRHFNMVFFVVIRLHDELLKKSQPVPNDCTYQRWRWFENCLC
        MDRR FAILCHLLR IAGLT TEV+DVEEMVAMF HIL HDVKNRV+QR+FMRSGET+SRHFNMV   VIRLHDELLKK QPVPN+CT QRWRWFENCL 
Subjt:  MDRRHFAILCHLLRIIAGLTLTEVIDVEEMVAMFFHILTHDVKNRVLQRKFMRSGETLSRHFNMVFFVVIRLHDELLKKSQPVPNDCTYQRWRWFENCLC

Query:  ALDGTYIKVNVPTSDRARYRTRKGRSPQMSL-----------------------------------------------ACYPNVEGFLASYRGQRYHLQQ
        ALDGTYIKVNVP SDRARYRTRKG      L                                               A YPN EGFLA YRGQRYHLQ+
Subjt:  ALDGTYIKVNVPTSDRARYRTRKGRSPQMSL-----------------------------------------------ACYPNVEGFLASYRGQRYHLQQ

Query:  WSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILK-----------------------------------------DNIDEVHSTHATTTADDIHYIKTSN
        W G +NAP TSKEFFNMKHSSA NVIER F +LK                                         DNIDEV STHATT ADDIHYI+TSN
Subjt:  WSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILK-----------------------------------------DNIDEVHSTHATTTADDIHYIKTSN

Query:  EWTQLRDDFAEEIFTE
        EW+Q RD+ AEE+FTE
Subjt:  EWTQLRDDFAEEIFTE

KAA0051057.1 retrotransposon protein [Cucumis melo var. makuwa]

1.2e-88

58.23

Show/hide

Query:  MDRRHFAILCHLLRIIAGLTLTEVIDVEEMVAMFFHILTHDVKNRVLQRKFMRSGETLSRHFNMVFFVVIRLHDELLKKSQPVPNDCTYQRWRWFENCLC
        MDRR FAILCHLLR IAGLT TEV+DVEEMVAMF HIL HDVKNRV+QR+FMRSGET+SRHFNMV   VIRLH+ELLKK QPVPN+CT QRWRWFENCL 
Subjt:  MDRRHFAILCHLLRIIAGLTLTEVIDVEEMVAMFFHILTHDVKNRVLQRKFMRSGETLSRHFNMVFFVVIRLHDELLKKSQPVPNDCTYQRWRWFENCLC

Query:  ALDGTYIKVNVPTSDRARYRTRKGRSPQMSL-----------------------------------------------ACYPNVEGFLASYRGQRYHLQQ
        ALDGTYIKVNVP SDRARYRTRKG      L                                               A YPN EGFLA YRGQRYHLQ+
Subjt:  ALDGTYIKVNVPTSDRARYRTRKGRSPQMSL-----------------------------------------------ACYPNVEGFLASYRGQRYHLQQ

Query:  WSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILK-----------------------------------------DNIDEVHSTHATTTADDIHYIKTSN
        W G +NAP TSKEFFNMKHS A NVIER F +LK                                         DNIDEV STHATTTADDIHYI+TSN
Subjt:  WSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILK-----------------------------------------DNIDEVHSTHATTTADDIHYIKTSN

Query:  EWTQLRDDFAEEIFTE
        EW+Q RD+ AEE+FTE
Subjt:  EWTQLRDDFAEEIFTE

KAA0065736.1 retrotransposon protein [Cucumis melo var. makuwa]

1.2e-88

57.91

Show/hide

Query:  MDRRHFAILCHLLRIIAGLTLTEVIDVEEMVAMFFHILTHDVKNRVLQRKFMRSGETLSRHFNMVFFVVIRLHDELLKKSQPVPNDCTYQRWRWFENCLC
        MDRR FAILCHLLR IAGLT TEV+DVEEMVAMF HIL HDVKNRV+QR+FMRSGET+ RHFNM+F  VIRLHDELLKK QPVPN+CT QRWRWFENCL 
Subjt:  MDRRHFAILCHLLRIIAGLTLTEVIDVEEMVAMFFHILTHDVKNRVLQRKFMRSGETLSRHFNMVFFVVIRLHDELLKKSQPVPNDCTYQRWRWFENCLC

Query:  ALDGTYIKVNVPTSDRARYRTRKGRSPQMSLAC-----------------------------------------------YPNVEGFLASYRGQRYHLQQ
        ALDGTYIKVNVP SD+ARYRTRKG      L                                                 YPNVEGFLA YRGQRYHLQ+
Subjt:  ALDGTYIKVNVPTSDRARYRTRKGRSPQMSLAC-----------------------------------------------YPNVEGFLASYRGQRYHLQQ

Query:  WSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILK-----------------------------------------DNIDEVHSTHATTTADDIHYIKTSN
        W   +NAP TSKEFFNMKHSSA NVIER F +LK                                         DNIDEV STHATT ADDIHYI+TSN
Subjt:  WSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILK-----------------------------------------DNIDEVHSTHATTTADDIHYIKTSN

Query:  EWTQLRDDFAEEIFTE
        EW+Q RDD AEE+FTE
Subjt:  EWTQLRDDFAEEIFTE

XP_008454695.1 PREDICTED: uncharacterized protein LOC103495050 [Cucumis melo]

5.3e-100

78.15

Show/hide

Query:  MDRRHFAILCHLLRIIAGLTLTEVIDVEEMVAMFFHILTHDVKNRVLQRKFMRSGETLSRHFNMVFFVVIRLHDELLKKSQPVPNDCTYQRWRWFENCLC
        MDRRHFAILCHLLRIIAGLTLTEV+DVEEMVAMF HILTHDVKNRV+QRKFMRSGET+SRHFNMVFFVVIRLHDELLKKSQPVPNDCTYQRWRWFENCLC
Subjt:  MDRRHFAILCHLLRIIAGLTLTEVIDVEEMVAMFFHILTHDVKNRVLQRKFMRSGETLSRHFNMVFFVVIRLHDELLKKSQPVPNDCTYQRWRWFENCLC

Query:  ALDGTYIKVNVPTSDRARYRTRKGRSPQMSLACYPNVEGFLASYRGQRYHLQQWSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILK----------DNI
        ALDGTYIKVNVPTSDRAR               YPNVEGFLASYRGQRYHLQQW GA+NAPLTSKEFFNMKHSSAHNVIER FNILK          D+I
Subjt:  ALDGTYIKVNVPTSDRARYRTRKGRSPQMSLACYPNVEGFLASYRGQRYHLQQWSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILK----------DNI

Query:  DEVHSTHATTTADDIHYIKTSNEWTQLRDDFAEEIFTE
         EV  TH T   DDIHY +  NEW+Q RD+ +EE+F++
Subjt:  DEVHSTHATTTADDIHYIKTSNEWTQLRDDFAEEIFTE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BZ73 uncharacterized protein LOC103495050

2.6e-100

78.15

Show/hide

Query:  MDRRHFAILCHLLRIIAGLTLTEVIDVEEMVAMFFHILTHDVKNRVLQRKFMRSGETLSRHFNMVFFVVIRLHDELLKKSQPVPNDCTYQRWRWFENCLC
        MDRRHFAILCHLLRIIAGLTLTEV+DVEEMVAMF HILTHDVKNRV+QRKFMRSGET+SRHFNMVFFVVIRLHDELLKKSQPVPNDCTYQRWRWFENCLC
Subjt:  MDRRHFAILCHLLRIIAGLTLTEVIDVEEMVAMFFHILTHDVKNRVLQRKFMRSGETLSRHFNMVFFVVIRLHDELLKKSQPVPNDCTYQRWRWFENCLC

Query:  ALDGTYIKVNVPTSDRARYRTRKGRSPQMSLACYPNVEGFLASYRGQRYHLQQWSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILK----------DNI
        ALDGTYIKVNVPTSDRAR               YPNVEGFLASYRGQRYHLQQW GA+NAPLTSKEFFNMKHSSAHNVIER FNILK          D+I
Subjt:  ALDGTYIKVNVPTSDRARYRTRKGRSPQMSLACYPNVEGFLASYRGQRYHLQQWSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILK----------DNI

Query:  DEVHSTHATTTADDIHYIKTSNEWTQLRDDFAEEIFTE
         EV  TH T   DDIHY +  NEW+Q RD+ +EE+F++
Subjt:  DEVHSTHATTTADDIHYIKTSNEWTQLRDDFAEEIFTE

A0A5A7TXW1 Retrotransposon protein

1.6e-89

58.54

Show/hide

Query:  MDRRHFAILCHLLRIIAGLTLTEVIDVEEMVAMFFHILTHDVKNRVLQRKFMRSGETLSRHFNMVFFVVIRLHDELLKKSQPVPNDCTYQRWRWFENCLC
        MDRR FAILCHLLR IAGLT TEV+DVEEMVAMF HIL HDVKNRV+QR+FMRSGET+SRHFNMV   VIRLHDELLKK QPVPN+CT QRWRWFENCL 
Subjt:  MDRRHFAILCHLLRIIAGLTLTEVIDVEEMVAMFFHILTHDVKNRVLQRKFMRSGETLSRHFNMVFFVVIRLHDELLKKSQPVPNDCTYQRWRWFENCLC

Query:  ALDGTYIKVNVPTSDRARYRTRKGRSPQMSL-----------------------------------------------ACYPNVEGFLASYRGQRYHLQQ
        ALDGTYIKVNVP SDRARYRTRKG      L                                               A YPN EGFLA YRGQRYHLQ+
Subjt:  ALDGTYIKVNVPTSDRARYRTRKGRSPQMSL-----------------------------------------------ACYPNVEGFLASYRGQRYHLQQ

Query:  WSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILK-----------------------------------------DNIDEVHSTHATTTADDIHYIKTSN
        W G +NAP TSKEFFNMKHSSA NVIER F +LK                                         DNIDEV STHATT ADDIHYI+TSN
Subjt:  WSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILK-----------------------------------------DNIDEVHSTHATTTADDIHYIKTSN

Query:  EWTQLRDDFAEEIFTE
        EW+Q RD+ AEE+FTE
Subjt:  EWTQLRDDFAEEIFTE

A0A5A7U9H2 Retrotransposon protein

6.0e-89

58.23

Show/hide

Query:  MDRRHFAILCHLLRIIAGLTLTEVIDVEEMVAMFFHILTHDVKNRVLQRKFMRSGETLSRHFNMVFFVVIRLHDELLKKSQPVPNDCTYQRWRWFENCLC
        MDRR FAILCHLLR IAGLT TEV+DVEEMVAMF HIL HDVKNRV+QR+FMRSGET+SRHFNMV   VIRLH+ELLKK QPVPN+CT QRWRWFENCL 
Subjt:  MDRRHFAILCHLLRIIAGLTLTEVIDVEEMVAMFFHILTHDVKNRVLQRKFMRSGETLSRHFNMVFFVVIRLHDELLKKSQPVPNDCTYQRWRWFENCLC

Query:  ALDGTYIKVNVPTSDRARYRTRKGRSPQMSL-----------------------------------------------ACYPNVEGFLASYRGQRYHLQQ
        ALDGTYIKVNVP SDRARYRTRKG      L                                               A YPN EGFLA YRGQRYHLQ+
Subjt:  ALDGTYIKVNVPTSDRARYRTRKGRSPQMSL-----------------------------------------------ACYPNVEGFLASYRGQRYHLQQ

Query:  WSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILK-----------------------------------------DNIDEVHSTHATTTADDIHYIKTSN
        W G +NAP TSKEFFNMKHS A NVIER F +LK                                         DNIDEV STHATTTADDIHYI+TSN
Subjt:  WSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILK-----------------------------------------DNIDEVHSTHATTTADDIHYIKTSN

Query:  EWTQLRDDFAEEIFTE
        EW+Q RD+ AEE+FTE
Subjt:  EWTQLRDDFAEEIFTE

A0A5A7VHB0 Retrotransposon protein

6.0e-89

57.91

Show/hide

Query:  MDRRHFAILCHLLRIIAGLTLTEVIDVEEMVAMFFHILTHDVKNRVLQRKFMRSGETLSRHFNMVFFVVIRLHDELLKKSQPVPNDCTYQRWRWFENCLC
        MDRR FAILCHLLR IAGLT TEV+DVEEMVAMF HIL HDVKNRV+QR+FMRSGET+ RHFNM+F  VIRLHDELLKK QPVPN+CT QRWRWFENCL 
Subjt:  MDRRHFAILCHLLRIIAGLTLTEVIDVEEMVAMFFHILTHDVKNRVLQRKFMRSGETLSRHFNMVFFVVIRLHDELLKKSQPVPNDCTYQRWRWFENCLC

Query:  ALDGTYIKVNVPTSDRARYRTRKGRSPQMSLAC-----------------------------------------------YPNVEGFLASYRGQRYHLQQ
        ALDGTYIKVNVP SD+ARYRTRKG      L                                                 YPNVEGFLA YRGQRYHLQ+
Subjt:  ALDGTYIKVNVPTSDRARYRTRKGRSPQMSLAC-----------------------------------------------YPNVEGFLASYRGQRYHLQQ

Query:  WSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILK-----------------------------------------DNIDEVHSTHATTTADDIHYIKTSN
        W   +NAP TSKEFFNMKHSSA NVIER F +LK                                         DNIDEV STHATT ADDIHYI+TSN
Subjt:  WSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILK-----------------------------------------DNIDEVHSTHATTTADDIHYIKTSN

Query:  EWTQLRDDFAEEIFTE
        EW+Q RDD AEE+FTE
Subjt:  EWTQLRDDFAEEIFTE

A0A5D3BDX0 Retrotransposon protein

4.6e-89

58.23

Show/hide

Query:  MDRRHFAILCHLLRIIAGLTLTEVIDVEEMVAMFFHILTHDVKNRVLQRKFMRSGETLSRHFNMVFFVVIRLHDELLKKSQPVPNDCTYQRWRWFENCLC
        MDRR FAILCHLLR IAGLT TEV+DVEEMVAMF HIL HDVKNRV+QR+FMRSGET+SRHFNMV   VIRLH+ELLKK QPVPN+CT QRWRWFENCL 
Subjt:  MDRRHFAILCHLLRIIAGLTLTEVIDVEEMVAMFFHILTHDVKNRVLQRKFMRSGETLSRHFNMVFFVVIRLHDELLKKSQPVPNDCTYQRWRWFENCLC

Query:  ALDGTYIKVNVPTSDRARYRTRKGRSPQMSL-----------------------------------------------ACYPNVEGFLASYRGQRYHLQQ
        ALDGTYIKVNVP SDRARYRTRKG      L                                               A YPN EGFLA YRGQRYHLQ+
Subjt:  ALDGTYIKVNVPTSDRARYRTRKGRSPQMSL-----------------------------------------------ACYPNVEGFLASYRGQRYHLQQ

Query:  WSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILK-----------------------------------------DNIDEVHSTHATTTADDIHYIKTSN
        W G +NAP TSKEFFNMKHSSA NVIER F +LK                                         DNIDEV STHATT ADDIHYI+TSN
Subjt:  WSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILK-----------------------------------------DNIDEVHSTHATTTADDIHYIKTSN

Query:  EWTQLRDDFAEEIFTE
        EW+Q RD+ AEE+FTE
Subjt:  EWTQLRDDFAEEIFTE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

2.7e-09

Show/hide

Query:  YPNVEGFLASYRGQRYHLQQWSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILK
        + N   FLA +RG RYHLQ+++G +  P T  E FN++H S  NVIER+F I K
Subjt:  YPNVEGFLASYRGQRYHLQQWSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILK

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

3.9e-16

27.31

Show/hide

Query:  MDRRHFAILCHLLRIIAGLTLTEVIDVEEMVAMFFHILTHDVKNRVLQRKFMRSGETLSRHFNMVFFVVIRLHDELLK---KSQPVPNDCTYQRWRWFEN
        MD+  F  LC LL+    L  T  I +E  +A+F  I+ H+++ R +Q  F  SGET+SRHFN V   VI +  +  +    S  + ND  Y     F++
Subjt:  MDRRHFAILCHLLRIIAGLTLTEVIDVEEMVAMFFHILTHDVKNRVLQRKFMRSGETLSRHFNMVFFVVIRLHDELLK---KSQPVPNDCTYQRWRWFEN

Query:  CLCALDGTYIKVNVPTSDRARYRTRKGRSPQMSLAC-----------------------------------------------YPNVEGFLASYRGQRYH
        C+  +D  +I V V   ++  +R   G   Q  LA                                                YPN+ GF+A Y G    
Subjt:  CLCALDGTYIKVNVPTSDRARYRTRKGRSPQMSLAC-----------------------------------------------YPNVEGFLASYRGQRYH

Query:  LQQWSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILKD
              + N+   +KE FN +H   H  I R F  LK+
Subjt:  LQQWSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILKD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGACCGAAGACATTTCGCCATTTTGTGCCACCTACTAAGGATCATTGCTGGACTAACGTTGACGGAAGTCATCGATGTTGAGGAGATGGTAGCAATGTTCTTCCACAT
TCTTACACACGATGTGAAAAACCGTGTTCTTCAACGAAAGTTCATGCGGTCGGGAGAGACACTTTCCCGTCATTTCAACATGGTTTTTTTTGTCGTTATTCGACTTCATG
ACGAGCTTTTGAAAAAATCACAACCAGTGCCTAACGATTGCACATATCAAAGATGGAGGTGGTTTGAGAATTGCCTATGTGCATTAGATGGAACGTACATAAAAGTCAAC
GTTCCAACAAGTGACCGAGCTAGGTATAGAACACGAAAGGGGAGGTCGCCACAAATGTCCTTGGCGTGTTACCCAAATGTAGAGGGTTTTTTGGCATCCTACAGAGGGCA
ACGCTACCACTTGCAGCAATGGTCTGGTGCTAAAAATGCACCTTTAACATCCAAAGAGTTTTTCAATATGAAGCATTCGTCTGCGCATAATGTAATCGAAAGAGTATTCA
ATATCTTGAAGGACAACATAGATGAGGTTCATTCCACCCACGCGACTACTACCGCCGATGACATACATTACATAAAGACGTCCAATGAGTGGACTCAATTGAGGGACGAC
TTTGCAGAAGAAATATTTACTGAGTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDRRHFAILCHLLRIIAGLTLTEVIDVEEMVAMFFHILTHDVKNRVLQRKFMRSGETLSRHFNMVFFVVIRLHDELLKKSQPVPNDCTYQRWRWFENCLCALDGTYIKVN
VPTSDRARYRTRKGRSPQMSLACYPNVEGFLASYRGQRYHLQQWSGAKNAPLTSKEFFNMKHSSAHNVIERVFNILKDNIDEVHSTHATTTADDIHYIKTSNEWTQLRDD
FAEEIFTE

Pay0006476 (gene) of Melon (Payzawat) v1 genome