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Pay0006633 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0006633
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRibonuclease H
Genome locationchr06:24251614..24252770
RNA-Seq ExpressionPay0006633
SyntenyPay0006633
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037621.1 uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]8.1e-10156.62Show/hide
Query:  MNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMIDIHEGI-------------------------------------------------------------
        MNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMIDIHEGI                                                             
Subjt:  MNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMIDIHEGI-------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -FEAANKNIKRIIEKMTITYKDWQEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNH
          EAANKNIKRIIEKMTITYKDW EMLPFALHGYRTSVRTSTGATPFSLVYGME VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNH
Subjt:  -FEAANKNIKRIIEKMTITYKDWQEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNH

Query:  GQLYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSDYVRRYYA
         QLYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDG+ELKNPVNSDYVRRYYA
Subjt:  GQLYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSDYVRRYYA

KAA0044917.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]3.5e-9696.17Show/hide
Query:  EAANKNIKRIIEKMTITYKDWQEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQ
        EAANKNIKRIIEKMTITYKDW EMLPFALHGYRTSVRTSTGAT FSLVYGME+VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLA LNHGQ
Subjt:  EAANKNIKRIIEKMTITYKDWQEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQ

Query:  LYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSDYVRRYYA
        LYQRRLMRAYNKKVHPRSFREGDL+LKRILPFQKDHRGKWTPNYEGPFVVKKAFSG ALLLTNMDGVELKNP+NSDYVRRYYA
Subjt:  LYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSDYVRRYYA

XP_031737561.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402452 [Cucumis sativus]1.9e-9754.95Show/hide
Query:  MNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMIDIHEGI-------------------------------------------------------------
        MNFFLSGEVLYKRNHDMVLLRCVD EEAKQIMI+IHEGI                                                             
Subjt:  MNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMIDIHEGI-------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  FEAANKNIKRIIEKMTITYKDWQEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHG
         EAANKNIKRIIEKMT TYKDW E+LPFALHGYRTSVRTSTGATPFSLVYGME VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNF+EEKRL AL+HG
Subjt:  FEAANKNIKRIIEKMTITYKDWQEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHG

Query:  QLYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSDYVRRYYA
        QLYQ+RLMRAYNKKVHPRSFREGDLVLKRILPF KDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSDYVRRYYA
Subjt:  QLYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSDYVRRYYA

XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]7.8e-9694.09Show/hide
Query:  GIFEAANKNIKRIIEKMTITYKDWQEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALN
        G  EAANKNIKRIIEKMT TYKDW E+LPFALHGYRTSVRTSTGATPFSLVYGME VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNF+EEKRL AL+
Subjt:  GIFEAANKNIKRIIEKMTITYKDWQEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALN

Query:  HGQLYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSDYVRRYYA
        HGQLYQ+RLMRAYNKKVHPRSFREGDLVLKRILPF KDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSDYVRRYYA
Subjt:  HGQLYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSDYVRRYYA

XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]7.7e-1194.87Show/hide
Query:  MNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMIDIHEGI
        MNFFLSGEVLYKRNHDMVLLRCVD EEAKQIMI+IHEGI
Subjt:  MNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMIDIHEGI

XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]7.8e-9694.09Show/hide
Query:  GIFEAANKNIKRIIEKMTITYKDWQEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALN
        G  EAANKNIKRIIEKMT TYKDW E+LPFALHGYRTSVRTSTGATPFSLVYGME VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNF+EEKRL AL+
Subjt:  GIFEAANKNIKRIIEKMTITYKDWQEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALN

Query:  HGQLYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSDYVRRYYA
        HGQLYQ+RLMRAYNKKVHPRSFREGDLVLKRILPF KDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSDYVRRYYA
Subjt:  HGQLYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSDYVRRYYA

XP_031741309.1 LOW QUALITY PROTEIN: uncharacterized protein LOC105435093 [Cucumis sativus]7.7e-1194.87Show/hide
Query:  MNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMIDIHEGI
        MNFFLSGEVLYKRNHDMVLLRCVD EEAKQIMI+IHEGI
Subjt:  MNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMIDIHEGI

TrEMBL top hitse value%identityAlignment
A0A5A7T1D0 RNA-directed DNA polymerase1.3e-9393.01Show/hide
Query:  GIFEAANKNIKRIIEKMTITYKDWQEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALN
        G  E ANKNIKRIIEKMTITYKDW EMLPFALHGYRTSVRTSTGA PF LVYGMEVVLPLEVE PSLRVL+EAKLDEAEWIRGRYEQLNFVEEK+L ALN
Subjt:  GIFEAANKNIKRIIEKMTITYKDWQEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALN

Query:  HGQLYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSDYVRRYYA
        H QLYQRRLMRAYNKKVH RSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELK+PVNSDYVRRYYA
Subjt:  HGQLYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSDYVRRYYA

A0A5A7T7R4 Ribonuclease H3.9e-10156.62Show/hide
Query:  MNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMIDIHEGI-------------------------------------------------------------
        MNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMIDIHEGI                                                             
Subjt:  MNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMIDIHEGI-------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -FEAANKNIKRIIEKMTITYKDWQEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNH
          EAANKNIKRIIEKMTITYKDW EMLPFALHGYRTSVRTSTGATPFSLVYGME VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNH
Subjt:  -FEAANKNIKRIIEKMTITYKDWQEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNH

Query:  GQLYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSDYVRRYYA
         QLYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDG+ELKNPVNSDYVRRYYA
Subjt:  GQLYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSDYVRRYYA

A0A5D3CXE2 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H1.7e-9696.17Show/hide
Query:  EAANKNIKRIIEKMTITYKDWQEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQ
        EAANKNIKRIIEKMTITYKDW EMLPFALHGYRTSVRTSTGAT FSLVYGME+VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLA LNHGQ
Subjt:  EAANKNIKRIIEKMTITYKDWQEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQ

Query:  LYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSDYVRRYYA
        LYQRRLMRAYNKKVHPRSFREGDL+LKRILPFQKDHRGKWTPNYEGPFVVKKAFSG ALLLTNMDGVELKNP+NSDYVRRYYA
Subjt:  LYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSDYVRRYYA

A0A5D3E1A3 RNA-directed DNA polymerase1.9e-9292.47Show/hide
Query:  GIFEAANKNIKRIIEKMTITYKDWQEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALN
        G  E ANKNIKRIIEKMTITYKDW EMLPFALHGYRTSVRTSTGA PF LVYGMEVVLPLEVE PSLRVL+EAKLDEAEWIRGRYEQLNFVEEK+L ALN
Subjt:  GIFEAANKNIKRIIEKMTITYKDWQEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALN

Query:  HGQLYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSDYVRRYYA
        H QLYQRRLMRAYNKKVH RSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFS GALLLTNMD VELKNPVNSDYVRRYYA
Subjt:  HGQLYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSDYVRRYYA

A0A6J1D7C7 Ribonuclease H1.6e-8683.33Show/hide
Query:  GIFEAANKNIKRIIEKMTITYKDWQEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALN
        G  EAANKNIKRI+EKMT+TY+DW EMLPFALHGYRTSVRTSTGATPFSLVYGME VLP+EVEIPSLRV+MEAKL EAEW++ RYEQLNFVEEKRL AL 
Subjt:  GIFEAANKNIKRIIEKMTITYKDWQEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALN

Query:  HGQLYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSDYVRRYYA
         GQLYQRR+M+AY+KKVH R FREGDLVLKRILP QKDHRGKWTPNYEGPFV+KKAFSGGAL+L NMDG E  NP+NSD+VR+YYA
Subjt:  HGQLYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELKNPVNSDYVRRYYA

A0A6J1D7C7 Ribonuclease H1.1e-0534.21Show/hide
Query:  MNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMIDIHEGIFEAANKNIKRIIEKMTITYKDW----QEMLPFA------------LHGYRTSVRTSTGATP
        M FFL+ E+LYKRNHDMVLLRCV+  +A +IM ++HE +    + N   I  ++      W     + + +A             H   + + T T   P
Subjt:  MNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMIDIHEGIFEAANKNIKRIIEKMTITYKDW----QEMLPFA------------LHGYRTSVRTSTGATP

Query:  FSLVYGMEVVLPLE
        FS+ +GM+V+ P+E
Subjt:  FSLVYGMEVVLPLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTTTTTCTTAAGTGGTGAAGTTCTTTATAAAAGAAACCACGATATGGTGCTCCTTCGGTGTGTTGATGAAGAGGAAGCAAAACAAATTATGATAGACATT
CATGAAGGAATATTCGAGGCAGCTAACAAAAATATTAAAAGAATCATTGAGAAAATGACAATAACATACAAAGATTGGCAAGAAATGCTACCGTTTGCGCTGCAT
GGATATCGCACATCAGTTCGCACTTCAACTGGGGCAACACCATTTTCTTTAGTTTATGGTATGGAAGTTGTTTTACCTTTAGAAGTTGAGATACCTTCATTGAGA
GTTCTCATGGAAGCTAAGTTAGATGAAGCTGAATGGATACGAGGTCGTTATGAGCAGTTGAATTTCGTTGAAGAAAAAAGGTTGGCAGCATTAAATCATGGGCAA
CTTTACCAAAGAAGACTAATGCGAGCATACAATAAGAAAGTGCATCCTCGAAGCTTTCGAGAGGGAGATTTGGTATTAAAAAGAATACTTCCATTTCAAAAGGAT
CATCGAGGAAAATGGACTCCTAATTATGAAGGCCCATTTGTAGTGAAAAAAGCTTTTTCAGGAGGAGCTCTACTTTTGACTAATATGGATGGCGTTGAGTTAAAA
AATCCTGTGAATTCAGATTATGTTCGAAGATATTATGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAACTTTTTCTTAAGTGGTGAAGTTCTTTATAAAAGAAACCACGATATGGTGCTCCTTCGGTGTGTTGATGAAGAGGAAGCAAAACAAATTATGATAGACATT
CATGAAGGAATATTCGAGGCAGCTAACAAAAATATTAAAAGAATCATTGAGAAAATGACAATAACATACAAAGATTGGCAAGAAATGCTACCGTTTGCGCTGCAT
GGATATCGCACATCAGTTCGCACTTCAACTGGGGCAACACCATTTTCTTTAGTTTATGGTATGGAAGTTGTTTTACCTTTAGAAGTTGAGATACCTTCATTGAGA
GTTCTCATGGAAGCTAAGTTAGATGAAGCTGAATGGATACGAGGTCGTTATGAGCAGTTGAATTTCGTTGAAGAAAAAAGGTTGGCAGCATTAAATCATGGGCAA
CTTTACCAAAGAAGACTAATGCGAGCATACAATAAGAAAGTGCATCCTCGAAGCTTTCGAGAGGGAGATTTGGTATTAAAAAGAATACTTCCATTTCAAAAGGAT
CATCGAGGAAAATGGACTCCTAATTATGAAGGCCCATTTGTAGTGAAAAAAGCTTTTTCAGGAGGAGCTCTACTTTTGACTAATATGGATGGCGTTGAGTTAAAA
AATCCTGTGAATTCAGATTATGTTCGAAGATATTATGCATGA
Protein sequenceShow/hide protein sequence
MNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMIDIHEGIFEAANKNIKRIIEKMTITYKDWQEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPLEVEIPSLR
VLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALLLTNMDGVELK
NPVNSDYVRRYYA