| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0046195.1 putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa] | 4.7e-158 | 97.37 | Show/hide |
Query: MSTLSDSFILGDDVSRDPSSSILTALEAYVLESYFDSTAEPATKYINQPPNQSSVAVESSSAPPISVLNSEYKVWKRQDRLISSWLLGSMSEDILNQMLH
MSTLSDSFILGDD ILTALEAYVLESYFDSTAEPATKYINQPPNQSSVAVESSSAPPISVLNSEYKVWKRQDRLISSWLLGSMSEDILNQMLH
Subjt: MSTLSDSFILGDDVSRDPSSSILTALEAYVLESYFDSTAEPATKYINQPPNQSSVAVESSSAPPISVLNSEYKVWKRQDRLISSWLLGSMSEDILNQMLH
Query: FTSAKQIWKTLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSL
FTSAKQIWKTLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSL
Subjt: FTSAKQIWKTLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSL
Query: LLTQESQIESKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYTTTNSQYHHKSRAGGRSNRGGRGNRHKTQCQICSKFGHVADRCYFRYTPR
LLTQESQIESKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYTTTNSQYHHKSRAGGRSNRGGRGNRHKTQCQICSKFGHVADRCYFRYTPR
Subjt: LLTQESQIESKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYTTTNSQYHHKSRAGGRSNRGGRGNRHKTQCQICSKFGHVADRCYFRYTPR
Query: NPPS
NPPS
Subjt: NPPS
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| KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 1.2e-222 | 53.21 | Show/hide |
Query: LGDDVSRDPSSSILTALEAYVLESYFDSTAEPATKYINQPPNQSSVAVESSSAPPISVLNSEYKVWKRQDRLISSWLLGSMSEDILNQMLHFTSAKQIWK
L DD ILTALEAY LE++ +S +EP +KY+ ++ ESSSA N YKVWKRQDRLISSWLLGSMSE+ILNQMLH SAK+IW+
Subjt: LGDDVSRDPSSSILTALEAYVLESYFDSTAEPATKYINQPPNQSSVAVESSSAPPISVLNSEYKVWKRQDRLISSWLLGSMSEDILNQMLHFTSAKQIWK
Query: TLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSLLLTQESQIE
TLQGI+SSRYLA+AMQFKNKLHN+KKG+M LKEYFLKI QCVDALASINKP+S+DDHILYILAGLG++YQS+IS+ISARTDSPSVQ+ MSLLLTQESQ E
Subjt: TLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSLLLTQESQIE
Query: SKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYTTTNSQYHHKSRAGGRSNRGGRGNRHKTQCQICSKFGHVADRCYFRYTPRNPPS-----
SK+ SE +LP+VN+ T T EK +E R NN Y +S R GRSNRG RGNR+K QCQIC+K G+ ADRC+FRYTPR+ S
Subjt: SKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYTTTNSQYHHKSRAGGRSNRGGRGNRHKTQCQICSKFGHVADRCYFRYTPRNPPS-----
Query: -----------------------------------ATNHLTHSLKNLLTGFEYGGGHQIYTANGSGLPILHYGSLQFTSSFIPTKTLVLKSLLHVHSSTK
ATNHLTHSL NL G EYGGG+QIY ANGSGLPI HYGS+ F SS +P K+ L +LL V S TK
Subjt: -----------------------------------ATNHLTHSLKNLLTGFEYGGGHQIYTANGSGLPILHYGSLQFTSSFIPTKTLVLKSLLHVHSSTK
Query: NLIS------------------------ETGQILLQGHLCDGLYQFNLKSSQQGSVKSTTNSNPRTLTTTLSKCPVNTTDVWHRRLGYPHLNIMRNVLKH
NLIS +TGQ+LLQG L DGLY+F ++ S + S +N+ P T + K D+WHRRLG+PHL I++ VL H
Subjt: NLIS------------------------ETGQILLQGHLCDGLYQFNLKSSQQGSVKSTTNSNPRTLTTTLSKCPVNTTDVWHRRLGYPHLNIMRNVLKH
Query: IHYTNVKINKMNFCEACALDKHHALPFHNSNTQYICPL-------------------------------------------------------------S
I ++ INK+NFCEACAL KHHALPF +S T Y PL S
Subjt: IHYTNVKINKMNFCEACALDKHHALPFHNSNTQYICPL-------------------------------------------------------------S
Query: IMSIQTDGGGEFKTFIPYLNNHGIEHRLTCPRTSQQNGVVERKHRHIMNMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFGRQPDY
I S+QTDGG EFK F P+L+ HGIEHR+TCP TS+QN +VERKHR+IM MGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVL+ +SPLEKLF R+P++
Subjt: IMSIQTDGGGEFKTFIPYLNNHGIEHRLTCPRTSQQNGVVERKHRHIMNMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFGRQPDY
Query: PFLRVFGCQCYPL------------SKPCTFLGYSSSHKGYKCLFQDGRLYISRHVFFYENSFPYASFSSHSIPSSTNNVFNPTVQSILHTPTLNHNPFR
P LRVFGC+CYP S PCTFLGYS+SHKGYKCL DGRL+ISRHV F ENSFPYASF+SHS + +V +P + SI+ + +NHN R
Subjt: PFLRVFGCQCYPL------------SKPCTFLGYSSSHKGYKCLFQDGRLYISRHVFFYENSFPYASFSSHSIPSSTNNVFNPTVQSILHTPTLNHNPFR
Query: HETETFLDNTD--NAAIMYPLETGISAQTIEESTSDGCDAIP
T+T DNTD N I+YPLETG + ++ S G P
Subjt: HETETFLDNTD--NAAIMYPLETGISAQTIEESTSDGCDAIP
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| KAA0059137.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 7.3e-111 | 68.55 | Show/hide |
Query: LGNEYQSIISIISARTDSPSVQDNMSLLLTQESQIESKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYTTTNSQYHHKSRAGGRSNRGGRG
LGNEYQS+IS+ISARTDS SVQD MSLLLTQESQIESKITS+VSLP VN+T HTRDI SLEK+ EVTHRG SNNL YTT NSQYHH+S GGRS RGGRG
Subjt: LGNEYQSIISIISARTDSPSVQDNMSLLLTQESQIESKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYTTTNSQYHHKSRAGGRSNRGGRG
Query: NRHKTQCQICSKFGHVADRCYFRYTPRNPPS----------------------------------------ATNHLTHSLKNLLTGFEYGGGHQIYTANG
NR+KTQCQIC+KFGH+AD CYFRYTPRN S A+NHLTHSL NL TG EYG GHQIY ANG
Subjt: NRHKTQCQICSKFGHVADRCYFRYTPRNPPS----------------------------------------ATNHLTHSLKNLLTGFEYGGGHQIYTANG
Query: SGLPILHYGSLQFTSSFIPTKTLVLKSLLHVHSSTKNLISETGQILLQGHLCDGLYQFNLKSSQQGSVKSTTNSNPRTLTTTLSKCPVNTTDVWHRRLGY
S LP+LH+GSLQFTSSF+P+K L LK+L HV S TKNL ETGQILLQ HLCDGLYQFNLKSS QGS+KST N NP LTTTLSK VNTTDVWHRRLG+
Subjt: SGLPILHYGSLQFTSSFIPTKTLVLKSLLHVHSSTKNLISETGQILLQGHLCDGLYQFNLKSSQQGSVKSTTNSNPRTLTTTLSKCPVNTTDVWHRRLGY
Query: PHLNIMRNVLKHIHYTNV
P+LN+MRN LKH+H+ N+
Subjt: PHLNIMRNVLKHIHYTNV
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| KAA0067212.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] | 6.8e-117 | 54.74 | Show/hide |
Query: ATNHLTHSLKNLLTGFEYGGGHQIYTANGSGLPILHYGSLQFTSSFIPTKTLVLKSLLHVHSSTKNLISETGQILLQGHLCDGLYQFNLKSSQQGSVKST
ATNHLTHSL NL TG EYGGG+QIY ANGSGLPI HYGS+ F SS +P K+ L +LLH +TGQ+LLQG L DGLY+F ++ S + S
Subjt: ATNHLTHSLKNLLTGFEYGGGHQIYTANGSGLPILHYGSLQFTSSFIPTKTLVLKSLLHVHSSTKNLISETGQILLQGHLCDGLYQFNLKSSQQGSVKST
Query: TNSNPRTLTTTLSKCPVNTTDVWHRRLGYPHLNIMRNVLKHIHYTNVKINKMNFCEACALDKHHALPFHNSNTQYICPLSIMSIQTDGGGEFKTFIPYLN
+N+ T + K D+WHRRLG+PHL ++ VL HI +++ K C +L + SI S+QTDGG EFK F P+L+
Subjt: TNSNPRTLTTTLSKCPVNTTDVWHRRLGYPHLNIMRNVLKHIHYTNVKINKMNFCEACALDKHHALPFHNSNTQYICPLSIMSIQTDGGGEFKTFIPYLN
Query: NHGIEHRLTCPRTSQQNGVVERKHRHIMNMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFGRQPDYPFLRVFGCQCYPL-------
HGIEHR+TCP TS+QN +VERKHRHIM MGLTLLSQATLPLSFWDEAF TSVYLIN LPTPVL+ +SPLEKLF R+P++PFLRVFGC+CYP
Subjt: NHGIEHRLTCPRTSQQNGVVERKHRHIMNMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFGRQPDYPFLRVFGCQCYPL-------
Query: -----SKPCTFLGYSSSHKGYKCLFQDGRLYISRHVFFYENSFPYASFSSHSIPSSTNNVFNPTVQSILHTPTLNHNPFRHETETFLDNTD--NAAIMYP
S PCTFLGYS+SHKGYKCL DGRL+ISRHV F ENSFPYASF+SHS + NV +P + SI+ + +NHN R T+T DNTD N+ I+YP
Subjt: -----SKPCTFLGYSSSHKGYKCLFQDGRLYISRHVFFYENSFPYASFSSHSIPSSTNNVFNPTVQSILHTPTLNHNPFRHETETFLDNTD--NAAIMYP
Query: LETGISAQTIEESTSDGCDAIP
LETG + ++ S G P
Subjt: LETGISAQTIEESTSDGCDAIP
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| TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 2.1e-222 | 53.21 | Show/hide |
Query: LGDDVSRDPSSSILTALEAYVLESYFDSTAEPATKYINQPPNQSSVAVESSSAPPISVLNSEYKVWKRQDRLISSWLLGSMSEDILNQMLHFTSAKQIWK
L DD ILTALEAY LE++ +S +EP +KY+ ++ ESSSA N YKVWKRQDRLISSWLLGSMSE+ILNQMLH SAK+IW+
Subjt: LGDDVSRDPSSSILTALEAYVLESYFDSTAEPATKYINQPPNQSSVAVESSSAPPISVLNSEYKVWKRQDRLISSWLLGSMSEDILNQMLHFTSAKQIWK
Query: TLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSLLLTQESQIE
TLQGI+SSRYLA+AMQFKNKLHN+KKG+M LKEYFLKI QCVDALASINKP+S+DDHILYILAGLG++YQS+IS+ISARTDSPSVQ+ MSLLLTQESQ E
Subjt: TLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSLLLTQESQIE
Query: SKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYTTTNSQYHHKSRAGGRSNRGGRGNRHKTQCQICSKFGHVADRCYFRYTPRNPPS-----
SK+ SE +LP+VN+ T T EK +E R NN Y +S R GRSNRG RGNR+K QCQIC+K G+ ADRC+FRYTPR+ S
Subjt: SKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYTTTNSQYHHKSRAGGRSNRGGRGNRHKTQCQICSKFGHVADRCYFRYTPRNPPS-----
Query: -----------------------------------ATNHLTHSLKNLLTGFEYGGGHQIYTANGSGLPILHYGSLQFTSSFIPTKTLVLKSLLHVHSSTK
ATNHLTHSL NL G EYGGG+QIY ANGSGLPI HYGS+ F SS +P K+ L +LL V S TK
Subjt: -----------------------------------ATNHLTHSLKNLLTGFEYGGGHQIYTANGSGLPILHYGSLQFTSSFIPTKTLVLKSLLHVHSSTK
Query: NLIS------------------------ETGQILLQGHLCDGLYQFNLKSSQQGSVKSTTNSNPRTLTTTLSKCPVNTTDVWHRRLGYPHLNIMRNVLKH
NLIS +TGQ+LLQG L DGLY+F ++ S + S +N+ P T + K D+WHRRLG+PHL I++ VL H
Subjt: NLIS------------------------ETGQILLQGHLCDGLYQFNLKSSQQGSVKSTTNSNPRTLTTTLSKCPVNTTDVWHRRLGYPHLNIMRNVLKH
Query: IHYTNVKINKMNFCEACALDKHHALPFHNSNTQYICPL-------------------------------------------------------------S
I ++ INK+NFCEACAL KHHALPF +S T Y PL S
Subjt: IHYTNVKINKMNFCEACALDKHHALPFHNSNTQYICPL-------------------------------------------------------------S
Query: IMSIQTDGGGEFKTFIPYLNNHGIEHRLTCPRTSQQNGVVERKHRHIMNMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFGRQPDY
I S+QTDGG EFK F P+L+ HGIEHR+TCP TS+QN +VERKHR+IM MGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVL+ +SPLEKLF R+P++
Subjt: IMSIQTDGGGEFKTFIPYLNNHGIEHRLTCPRTSQQNGVVERKHRHIMNMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFGRQPDY
Query: PFLRVFGCQCYPL------------SKPCTFLGYSSSHKGYKCLFQDGRLYISRHVFFYENSFPYASFSSHSIPSSTNNVFNPTVQSILHTPTLNHNPFR
P LRVFGC+CYP S PCTFLGYS+SHKGYKCL DGRL+ISRHV F ENSFPYASF+SHS + +V +P + SI+ + +NHN R
Subjt: PFLRVFGCQCYPL------------SKPCTFLGYSSSHKGYKCLFQDGRLYISRHVFFYENSFPYASFSSHSIPSSTNNVFNPTVQSILHTPTLNHNPFR
Query: HETETFLDNTD--NAAIMYPLETGISAQTIEESTSDGCDAIP
T+T DNTD N I+YPLETG + ++ S G P
Subjt: HETETFLDNTD--NAAIMYPLETGISAQTIEESTSDGCDAIP
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 5.9e-223 | 53.21 | Show/hide |
Query: LGDDVSRDPSSSILTALEAYVLESYFDSTAEPATKYINQPPNQSSVAVESSSAPPISVLNSEYKVWKRQDRLISSWLLGSMSEDILNQMLHFTSAKQIWK
L DD ILTALEAY LE++ +S +EP +KY+ ++ ESSSA N YKVWKRQDRLISSWLLGSMSE+ILNQMLH SAK+IW+
Subjt: LGDDVSRDPSSSILTALEAYVLESYFDSTAEPATKYINQPPNQSSVAVESSSAPPISVLNSEYKVWKRQDRLISSWLLGSMSEDILNQMLHFTSAKQIWK
Query: TLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSLLLTQESQIE
TLQGI+SSRYLA+AMQFKNKLHN+KKG+M LKEYFLKI QCVDALASINKP+S+DDHILYILAGLG++YQS+IS+ISARTDSPSVQ+ MSLLLTQESQ E
Subjt: TLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSLLLTQESQIE
Query: SKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYTTTNSQYHHKSRAGGRSNRGGRGNRHKTQCQICSKFGHVADRCYFRYTPRNPPS-----
SK+ SE +LP+VN+ T T EK +E R NN Y +S R GRSNRG RGNR+K QCQIC+K G+ ADRC+FRYTPR+ S
Subjt: SKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYTTTNSQYHHKSRAGGRSNRGGRGNRHKTQCQICSKFGHVADRCYFRYTPRNPPS-----
Query: -----------------------------------ATNHLTHSLKNLLTGFEYGGGHQIYTANGSGLPILHYGSLQFTSSFIPTKTLVLKSLLHVHSSTK
ATNHLTHSL NL G EYGGG+QIY ANGSGLPI HYGS+ F SS +P K+ L +LL V S TK
Subjt: -----------------------------------ATNHLTHSLKNLLTGFEYGGGHQIYTANGSGLPILHYGSLQFTSSFIPTKTLVLKSLLHVHSSTK
Query: NLIS------------------------ETGQILLQGHLCDGLYQFNLKSSQQGSVKSTTNSNPRTLTTTLSKCPVNTTDVWHRRLGYPHLNIMRNVLKH
NLIS +TGQ+LLQG L DGLY+F ++ S + S +N+ P T + K D+WHRRLG+PHL I++ VL H
Subjt: NLIS------------------------ETGQILLQGHLCDGLYQFNLKSSQQGSVKSTTNSNPRTLTTTLSKCPVNTTDVWHRRLGYPHLNIMRNVLKH
Query: IHYTNVKINKMNFCEACALDKHHALPFHNSNTQYICPL-------------------------------------------------------------S
I ++ INK+NFCEACAL KHHALPF +S T Y PL S
Subjt: IHYTNVKINKMNFCEACALDKHHALPFHNSNTQYICPL-------------------------------------------------------------S
Query: IMSIQTDGGGEFKTFIPYLNNHGIEHRLTCPRTSQQNGVVERKHRHIMNMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFGRQPDY
I S+QTDGG EFK F P+L+ HGIEHR+TCP TS+QN +VERKHR+IM MGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVL+ +SPLEKLF R+P++
Subjt: IMSIQTDGGGEFKTFIPYLNNHGIEHRLTCPRTSQQNGVVERKHRHIMNMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFGRQPDY
Query: PFLRVFGCQCYPL------------SKPCTFLGYSSSHKGYKCLFQDGRLYISRHVFFYENSFPYASFSSHSIPSSTNNVFNPTVQSILHTPTLNHNPFR
P LRVFGC+CYP S PCTFLGYS+SHKGYKCL DGRL+ISRHV F ENSFPYASF+SHS + +V +P + SI+ + +NHN R
Subjt: PFLRVFGCQCYPL------------SKPCTFLGYSSSHKGYKCLFQDGRLYISRHVFFYENSFPYASFSSHSIPSSTNNVFNPTVQSILHTPTLNHNPFR
Query: HETETFLDNTD--NAAIMYPLETGISAQTIEESTSDGCDAIP
T+T DNTD N I+YPLETG + ++ S G P
Subjt: HETETFLDNTD--NAAIMYPLETGISAQTIEESTSDGCDAIP
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| A0A5A7VFQ6 Retrotransposon protein, putative, Ty1-copia subclass | 3.3e-117 | 54.74 | Show/hide |
Query: ATNHLTHSLKNLLTGFEYGGGHQIYTANGSGLPILHYGSLQFTSSFIPTKTLVLKSLLHVHSSTKNLISETGQILLQGHLCDGLYQFNLKSSQQGSVKST
ATNHLTHSL NL TG EYGGG+QIY ANGSGLPI HYGS+ F SS +P K+ L +LLH +TGQ+LLQG L DGLY+F ++ S + S
Subjt: ATNHLTHSLKNLLTGFEYGGGHQIYTANGSGLPILHYGSLQFTSSFIPTKTLVLKSLLHVHSSTKNLISETGQILLQGHLCDGLYQFNLKSSQQGSVKST
Query: TNSNPRTLTTTLSKCPVNTTDVWHRRLGYPHLNIMRNVLKHIHYTNVKINKMNFCEACALDKHHALPFHNSNTQYICPLSIMSIQTDGGGEFKTFIPYLN
+N+ T + K D+WHRRLG+PHL ++ VL HI +++ K C +L + SI S+QTDGG EFK F P+L+
Subjt: TNSNPRTLTTTLSKCPVNTTDVWHRRLGYPHLNIMRNVLKHIHYTNVKINKMNFCEACALDKHHALPFHNSNTQYICPLSIMSIQTDGGGEFKTFIPYLN
Query: NHGIEHRLTCPRTSQQNGVVERKHRHIMNMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFGRQPDYPFLRVFGCQCYPL-------
HGIEHR+TCP TS+QN +VERKHRHIM MGLTLLSQATLPLSFWDEAF TSVYLIN LPTPVL+ +SPLEKLF R+P++PFLRVFGC+CYP
Subjt: NHGIEHRLTCPRTSQQNGVVERKHRHIMNMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFGRQPDYPFLRVFGCQCYPL-------
Query: -----SKPCTFLGYSSSHKGYKCLFQDGRLYISRHVFFYENSFPYASFSSHSIPSSTNNVFNPTVQSILHTPTLNHNPFRHETETFLDNTD--NAAIMYP
S PCTFLGYS+SHKGYKCL DGRL+ISRHV F ENSFPYASF+SHS + NV +P + SI+ + +NHN R T+T DNTD N+ I+YP
Subjt: -----SKPCTFLGYSSSHKGYKCLFQDGRLYISRHVFFYENSFPYASFSSHSIPSSTNNVFNPTVQSILHTPTLNHNPFRHETETFLDNTD--NAAIMYP
Query: LETGISAQTIEESTSDGCDAIP
LETG + ++ S G P
Subjt: LETGISAQTIEESTSDGCDAIP
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| A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.0e-222 | 53.21 | Show/hide |
Query: LGDDVSRDPSSSILTALEAYVLESYFDSTAEPATKYINQPPNQSSVAVESSSAPPISVLNSEYKVWKRQDRLISSWLLGSMSEDILNQMLHFTSAKQIWK
L DD ILTALEAY LE++ +S +EP +KY+ ++ ESSSA N YKVWKRQDRLISSWLLGSMSE+ILNQMLH SAK+IW+
Subjt: LGDDVSRDPSSSILTALEAYVLESYFDSTAEPATKYINQPPNQSSVAVESSSAPPISVLNSEYKVWKRQDRLISSWLLGSMSEDILNQMLHFTSAKQIWK
Query: TLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSLLLTQESQIE
TLQGI+SSRYLA+AMQFKNKLHN+KKG+M LKEYFLKI QCVDALASINKP+S+DDHILYILAGLG++YQS+IS+ISARTDSPSVQ+ MSLLLTQESQ E
Subjt: TLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSLLLTQESQIE
Query: SKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYTTTNSQYHHKSRAGGRSNRGGRGNRHKTQCQICSKFGHVADRCYFRYTPRNPPS-----
SK+ SE +LP+VN+ T T EK +E R NN Y +S R GRSNRG RGNR+K QCQIC+K G+ ADRC+FRYTPR+ S
Subjt: SKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYTTTNSQYHHKSRAGGRSNRGGRGNRHKTQCQICSKFGHVADRCYFRYTPRNPPS-----
Query: -----------------------------------ATNHLTHSLKNLLTGFEYGGGHQIYTANGSGLPILHYGSLQFTSSFIPTKTLVLKSLLHVHSSTK
ATNHLTHSL NL G EYGGG+QIY ANGSGLPI HYGS+ F SS +P K+ L +LL V S TK
Subjt: -----------------------------------ATNHLTHSLKNLLTGFEYGGGHQIYTANGSGLPILHYGSLQFTSSFIPTKTLVLKSLLHVHSSTK
Query: NLIS------------------------ETGQILLQGHLCDGLYQFNLKSSQQGSVKSTTNSNPRTLTTTLSKCPVNTTDVWHRRLGYPHLNIMRNVLKH
NLIS +TGQ+LLQG L DGLY+F ++ S + S +N+ P T + K D+WHRRLG+PHL I++ VL H
Subjt: NLIS------------------------ETGQILLQGHLCDGLYQFNLKSSQQGSVKSTTNSNPRTLTTTLSKCPVNTTDVWHRRLGYPHLNIMRNVLKH
Query: IHYTNVKINKMNFCEACALDKHHALPFHNSNTQYICPL-------------------------------------------------------------S
I ++ INK+NFCEACAL KHHALPF +S T Y PL S
Subjt: IHYTNVKINKMNFCEACALDKHHALPFHNSNTQYICPL-------------------------------------------------------------S
Query: IMSIQTDGGGEFKTFIPYLNNHGIEHRLTCPRTSQQNGVVERKHRHIMNMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFGRQPDY
I S+QTDGG EFK F P+L+ HGIEHR+TCP TS+QN +VERKHR+IM MGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVL+ +SPLEKLF R+P++
Subjt: IMSIQTDGGGEFKTFIPYLNNHGIEHRLTCPRTSQQNGVVERKHRHIMNMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFGRQPDY
Query: PFLRVFGCQCYPL------------SKPCTFLGYSSSHKGYKCLFQDGRLYISRHVFFYENSFPYASFSSHSIPSSTNNVFNPTVQSILHTPTLNHNPFR
P LRVFGC+CYP S PCTFLGYS+SHKGYKCL DGRL+ISRHV F ENSFPYASF+SHS + +V +P + SI+ + +NHN R
Subjt: PFLRVFGCQCYPL------------SKPCTFLGYSSSHKGYKCLFQDGRLYISRHVFFYENSFPYASFSSHSIPSSTNNVFNPTVQSILHTPTLNHNPFR
Query: HETETFLDNTD--NAAIMYPLETGISAQTIEESTSDGCDAIP
T+T DNTD N I+YPLETG + ++ S G P
Subjt: HETETFLDNTD--NAAIMYPLETGISAQTIEESTSDGCDAIP
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| A0A5D3CRZ7 Putative Ty1-copia-like retrotransposon | 2.3e-158 | 97.37 | Show/hide |
Query: MSTLSDSFILGDDVSRDPSSSILTALEAYVLESYFDSTAEPATKYINQPPNQSSVAVESSSAPPISVLNSEYKVWKRQDRLISSWLLGSMSEDILNQMLH
MSTLSDSFILGDD ILTALEAYVLESYFDSTAEPATKYINQPPNQSSVAVESSSAPPISVLNSEYKVWKRQDRLISSWLLGSMSEDILNQMLH
Subjt: MSTLSDSFILGDDVSRDPSSSILTALEAYVLESYFDSTAEPATKYINQPPNQSSVAVESSSAPPISVLNSEYKVWKRQDRLISSWLLGSMSEDILNQMLH
Query: FTSAKQIWKTLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSL
FTSAKQIWKTLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSL
Subjt: FTSAKQIWKTLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKEYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSL
Query: LLTQESQIESKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYTTTNSQYHHKSRAGGRSNRGGRGNRHKTQCQICSKFGHVADRCYFRYTPR
LLTQESQIESKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYTTTNSQYHHKSRAGGRSNRGGRGNRHKTQCQICSKFGHVADRCYFRYTPR
Subjt: LLTQESQIESKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYTTTNSQYHHKSRAGGRSNRGGRGNRHKTQCQICSKFGHVADRCYFRYTPR
Query: NPPS
NPPS
Subjt: NPPS
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| A0A5D3DDT9 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 3.5e-111 | 68.55 | Show/hide |
Query: LGNEYQSIISIISARTDSPSVQDNMSLLLTQESQIESKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYTTTNSQYHHKSRAGGRSNRGGRG
LGNEYQS+IS+ISARTDS SVQD MSLLLTQESQIESKITS+VSLP VN+T HTRDI SLEK+ EVTHRG SNNL YTT NSQYHH+S GGRS RGGRG
Subjt: LGNEYQSIISIISARTDSPSVQDNMSLLLTQESQIESKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYTTTNSQYHHKSRAGGRSNRGGRG
Query: NRHKTQCQICSKFGHVADRCYFRYTPRNPPS----------------------------------------ATNHLTHSLKNLLTGFEYGGGHQIYTANG
NR+KTQCQIC+KFGH+AD CYFRYTPRN S A+NHLTHSL NL TG EYG GHQIY ANG
Subjt: NRHKTQCQICSKFGHVADRCYFRYTPRNPPS----------------------------------------ATNHLTHSLKNLLTGFEYGGGHQIYTANG
Query: SGLPILHYGSLQFTSSFIPTKTLVLKSLLHVHSSTKNLISETGQILLQGHLCDGLYQFNLKSSQQGSVKSTTNSNPRTLTTTLSKCPVNTTDVWHRRLGY
S LP+LH+GSLQFTSSF+P+K L LK+L HV S TKNL ETGQILLQ HLCDGLYQFNLKSS QGS+KST N NP LTTTLSK VNTTDVWHRRLG+
Subjt: SGLPILHYGSLQFTSSFIPTKTLVLKSLLHVHSSTKNLISETGQILLQGHLCDGLYQFNLKSSQQGSVKSTTNSNPRTLTTTLSKCPVNTTDVWHRRLGY
Query: PHLNIMRNVLKHIHYTNV
P+LN+MRN LKH+H+ N+
Subjt: PHLNIMRNVLKHIHYTNV
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 6.2e-12 | 37.61 | Show/hide |
Query: LSIMSIQTDGGGEF--KTFIPYLNNHGIEHRLTCPRTSQQNGVVERKHRHIMNMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVL--NQLSPLEKLF
L ++ + D G E+ + GI + LT P T Q NGV ER R I T++S A L SFW EA T+ YLINR+P+ L + +P E
Subjt: LSIMSIQTDGGGEF--KTFIPYLNNHGIEHRLTCPRTSQQNGVVERKHRHIMNMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVL--NQLSPLEKLF
Query: GRQPDYPFLRVFGCQCY
++P LRVFG Y
Subjt: GRQPDYPFLRVFGCQCY
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.2e-23 | 22.6 | Show/hide |
Query: WKRQDRLISSWLLGSMSEDILNQMLHFTSAKQIWKTLQGIYSSRYLAKAMQFKNKLH--NMKKGAMSLKEYFLKIQQCVDALASINKPISTDDHILYILA
W D +S + +S+D++N ++ +A+ IW L+ +Y S+ L + K +L+ +M +G L + + LA++ I +D + +L
Subjt: WKRQDRLISSWLLGSMSEDILNQMLHFTSAKQIWKTLQGIYSSRYLAKAMQFKNKLH--NMKKGAMSLKEYFLKIQQCVDALASINKPISTDDHILYILA
Query: GLGNEYQSIISIISARTDSPSVQDNMSLLLTQESQIESKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNL-------CYTTTNSQYHHKSRAGG
L + Y ++ + I + ++D S LL E + +L T + S+ S RG S N CY + +
Subjt: GLGNEYQSIISIISARTDSPSVQDNMSLLLTQESQIESKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNL-------CYTTTNSQYHHKSRAGG
Query: RSNRG---GRGNRHKTQCQICSK-----FGHVADRCYFRYTPRNP---PSATNHLTHSLKNLLTGFEYGGGHQIYTANGSGLPILHYGSLQFTSSFIPTK
R +G G+ N T + + F + + C P + +A +H +++L + G + N S I G + ++
Subjt: RSNRG---GRGNRHKTQCQICSK-----FGHVADRCYFRYTPRNP---PSATNHLTHSLKNLLTGFEYGGGHQIYTANGSGLPILHYGSLQFTSSFIPTK
Query: TLVLKSLLHVHSSTKNLISETGQILLQGHLCDGLYQFNLKSSQQGSVKSTTNSNPRTLTTT---LSKCPVN------TTDVWHRRLGYPHLNIMRNVLKH
TLVLK + HV NLIS I L + + +GS+ TL T + + +N + D+WH+R+G+ ++ + K
Subjt: TLVLKSLLHVHSSTKNLISETGQILLQGHLCDGLYQFNLKSSQQGSVKSTTNSNPRTLTTT---LSKCPVN------TTDVWHRRLGYPHLNIMRNVLKH
Query: IHYTNVKINKMNFCEACALDKHHALPFHNSNTQY----------IC-PLSIMS-----------------------------------------------
+ K + C+ C K H + F S+ + +C P+ I S
Subjt: IHYTNVKINKMNFCEACALDKHHALPFHNSNTQY----------IC-PLSIMS-----------------------------------------------
Query: ---IQTDGGGEF--KTFIPYLNNHGIEHRLTCPRTSQQNGVVERKHRHIMNMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFGRQP
+++D GGE+ + F Y ++HGI H T P T Q NGV ER +R I+ ++L A LP SFW EA T+ YLINR P+ L P ++
Subjt: ---IQTDGGGEF--KTFIPYLNNHGIEHRLTCPRTSQQNGVVERKHRHIMNMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFGRQP
Query: DYPFLRVFGCQCY------------PLSKPCTFLGYSSSHKGYKCLFQDGRLYI-SRHVFFYENSFPYASFSSHSIPSSTNNVFNPTVQSILHTPTLNHN
Y L+VFGC+ + S PC F+GY GY+ + I SR V F E+ A+ S + N + + + P+ ++N
Subjt: DYPFLRVFGCQCY------------PLSKPCTFLGYSSSHKGYKCLFQDGRLYI-SRHVFFYENSFPYASFSSHSIPSSTNNVFNPTVQSILHTPTLNHN
Query: PFRHETET
P E+ T
Subjt: PFRHETET
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.8e-75 | 29.84 | Show/hide |
Query: SSSAPPISV-------LNSEYKVWKRQDRLISSWLLGSMSEDILNQMLHFTSAKQIWKTLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKEYFLKIQQCV
S++ PP ++ +N +Y WKRQD+LI S +LG++S + + T+A QIW+TL+ IY++ Q + +L KG ++ +Y +
Subjt: SSSAPPISV-------LNSEYKVWKRQDRLISSWLLGSMSEDILNQMLHFTSAKQIWKTLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKEYFLKIQQCV
Query: DALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSLLLTQESQIESKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYT
D LA + KP+ D+ + +L L EY+ +I I+A+ P++ + LL ES+I + ++ V T N +H ++ + G+ N Y
Subjt: DALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSLLLTQESQIESKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYT
Query: TTNSQYHHKSRAGGRSNRGGRGNRHKT---QCQICSKFGHVADRC----YF-----------RYTPRNP------------------PSATNHLTHSLKN
N+ + K +N N+ K +CQIC GH A RC +F +TP P AT+H+T N
Subjt: TTNSQYHHKSRAGGRSNRGGRGNRHKT---QCQICSKFGHVADRC----YF-----------RYTPRNP------------------PSATNHLTHSLKN
Query: LLTGFEYGGGHQIYTANGSGLPILHYGSLQFTSSFIPTKTLVLKSLLHVHSSTKNLIS------------------------ETGQILLQGHLCDGLYQF
L Y GG + A+GS +PI H GS TS ++ L L ++L+V + KNLIS TG LLQG D LY++
Subjt: LLTGFEYGGGHQIYTANGSGLPILHYGSLQFTSSFIPTKTLVLKSLLHVHSSTKNLIS------------------------ETGQILLQGHLCDGLYQF
Query: NLKSSQQGSVKSTTNSNPRTLTTTLSKCPVNTTDVWHRRLGYPHLNIMRNVLKHIHYTNVK-INKMNFCEACALDKHHALPFHNSNTQYICPLS------
+ SSQ S+ ++ +S T WH RLG+P +I+ +V+ + + + +K C C ++K + +PF S PL
Subjt: NLKSSQQGSVKSTTNSNPRTLTTTLSKCPVNTTDVWHRRLGYPHLNIMRNVLKHIHYTNVK-INKMNFCEACALDKHHALPFHNSNTQYICPLS------
Query: ------------------------------------------------------IMSIQTDGGGEFKTFIPYLNNHGIEHRLTCPRTSQQNGVVERKHRH
I + +D GGEF Y + HGI H + P T + NG+ ERKHRH
Subjt: ------------------------------------------------------IMSIQTDGGGEFKTFIPYLNNHGIEHRLTCPRTSQQNGVVERKHRH
Query: IMNMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFGRQPDYPFLRVFGCQCYPLSKP------------CTFLGYSSSHKGYKCL-F
I+ GLTLLS A++P ++W AF+ +VYLINRLPTP+L SP +KLFG P+Y LRVFGC CYP +P C FLGYS + Y CL
Subjt: IMNMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFGRQPDYPFLRVFGCQCYPLSKP------------CTFLGYSSSHKGYKCL-F
Query: QDGRLYISRHVFFYENSFPYASFSSHSIP-----SSTNNVFNPTVQSILHTPTL
Q RLYISRHV F EN FP++++ + P ++ V++P TP L
Subjt: QDGRLYISRHVFFYENSFPYASFSSHSIP-----SSTNNVFNPTVQSILHTPTL
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 4.4e-74 | 30.46 | Show/hide |
Query: SSSAPPISV-------LNSEYKVWKRQDRLISSWLLGSMSEDILNQMLHFTSAKQIWKTLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKEYFLKIQQCV
S+ PP ++ +N +Y W+RQD+LI S +LG++S + + T+A QIW+TL+ IY++ Q L+
Subjt: SSSAPPISV-------LNSEYKVWKRQDRLISSWLLGSMSEDILNQMLHFTSAKQIWKTLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLKEYFLKIQQCV
Query: DALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSLLLTQESQIESKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYT
D LA + KP+ D+ + +L L ++Y+ +I I+A+ PS+ + L+ +ES++ + ++EV T N+ TH ++ + + +R +NN
Subjt: DALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSLLLTQESQIESKITSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYT
Query: TTNSQYHHKSRAGGRSNRGGRGNRHKTQCQICSKFGHVADRC----YFR-----------YTPRNP------------------PSATNHLTHSLKNLLT
S S +G RS+ + + +CQICS GH A RC F+ +TP P AT+H+T NL
Subjt: TTNSQYHHKSRAGGRSNRGGRGNRHKTQCQICSKFGHVADRC----YFR-----------YTPRNP------------------PSATNHLTHSLKNLLT
Query: GFEYGGGHQIYTANGSGLPILHYGSLQFTSSFIPTKTLVLKSLLHVHSSTKNLIS------------------------ETGQILLQGHLCDGLYQFNLK
Y GG + A+GS +PI H GS +S +++L L +L+V + KNLIS TG LLQG D LY++ +
Subjt: GFEYGGGHQIYTANGSGLPILHYGSLQFTSSFIPTKTLVLKSLLHVHSSTKNLIS------------------------ETGQILLQGHLCDGLYQFNLK
Query: SSQQGSVKSTTNSNPRTLTTTLSKCPVNTTDVWHRRLGYPHLNIMRNVLKHIHYTNV--KINKMNFCEACALDKHHALPFHNSN----------------
SSQ S+ + S C T WH RLG+P L I+ +V+ + H V +K+ C C ++K H +PF NS
Subjt: SSQQGSVKSTTNSNPRTLTTTLSKCPVNTTDVWHRRLGYPHLNIMRNVLKHIHYTNV--KINKMNFCEACALDKHHALPFHNSN----------------
Query: -------------------TQY--ICPLS-----------------------IMSIQTDGGGEFKTFIPYLNNHGIEHRLTCPRTSQQNGVVERKHRHIM
T+Y + PL I ++ +D GGEF YL+ HGI H + P T + NG+ ERKHRHI+
Subjt: -------------------TQY--ICPLS-----------------------IMSIQTDGGGEFKTFIPYLNNHGIEHRLTCPRTSQQNGVVERKHRHIM
Query: NMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFGRQPDYPFLRVFGCQCYP------------LSKPCTFLGYSSSHKGYKCL-FQD
MGLTLLS A++P ++W AFS +VYLINRLPTP+L SP +KLFG+ P+Y L+VFGC CYP SK C F+GYS + Y CL
Subjt: NMGLTLLSQATLPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFGRQPDYPFLRVFGCQCYP------------LSKPCTFLGYSSSHKGYKCL-FQD
Query: GRLYISRHVFFYENSFPYASFS----------SHSIPSSTNNVFNPTVQSILHTP
GRLY SRHV F E FP+++ + S S P+ ++ PT +L P
Subjt: GRLYISRHVFFYENSFPYASFS----------SHSIPSSTNNVFNPTVQSILHTP
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