CuGenDBv2

Gene ID	Pay0007360
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr05:13976232..13980079
RNA-Seq Expression	Pay0007360
Synteny	Pay0007360
Gene Ontology terms	GO:0009987 - cellular process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016740 - transferase activity (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR012337 - Ribonuclease H-like superfamily IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase IPR036397 - Ribonuclease H superfamily IPR036875 - Zinc finger, CCHC-type superfamily IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0052755.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

0.0e+00

76.7

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Query:  MFIRMTVASNIKSTIKNIEDAKEFMKS------------SLAATLMSTLTNIKFDGSHTIHEHILEMTNLAARLKTMGMKVNENFLVTFILNSLPSDYGT
        MFIRMTVA+NIK TIKN EDAKEFMKS            SLA TLMSTLTNIKFDGS TIHEHILEMTNLAARLKTMGM+VNENFLV FILNSLPS+YG 
Subjt:  MFIRMTVASNIKSTIKNIEDAKEFMKS------------SLAATLMSTLTNIKFDGSHTIHEHILEMTNLAARLKTMGMKVNENFLVTFILNSLPSDYGT

Query:  FHMNYNALKDKWN----------------KPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKRQIKDKCRFCNKPGHYQKDCLKRKAWFE
        FHMNYN LKDKWN                KPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKK QIKDKCRFCNKPGHYQKDCLKRKAWFE
Subjt:  FHMNYNALKDKWN----------------KPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKRQIKDKCRFCNKPGHYQKDCLKRKAWFE

Query:  NKGKHNALVCFESNLTEVPYNTWWIDSGCTIHISNTMQGFLTTEPQTQMRDSFLWETESNIMENMTRMGQCPGPFAKFLESHGICAQ-----YTMPGTPQ
        NK +                    +D    I                 +R     E      EN    GQCPGPFAKFLESHGICAQ     YTMPGTPQ
Subjt:  NKGKHNALVCFESNLTEVPYNTWWIDSGCTIHISNTMQGFLTTEPQTQMRDSFLWETESNIMENMTRMGQCPGPFAKFLESHGICAQ-----YTMPGTPQ

Query:  QNGVAERR-------------NRTLMN---MKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETENVRFIENDIISGSLEP-----------------
        QN VAER+                + N    K DSRTTSGFFIGY EKSKGYRFYCPNHSTRIVET NVRFIENDII+GSLEP                 
Subjt:  QNGVAERR-------------NRTLMN---MKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETENVRFIENDIISGSLEP-----------------

Query:  ------------------TTINGQIPHNDIVANEPVTEGPQEIELRISGRSRRSAISDDYLIYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEEL
                            INGQ PHNDIV NEPVTEGPQEIELR S RSRRSAISDDYL+YLHESEFDLSIDNDPVSFSQAIKG+NSTKWLDAMKEEL
Subjt:  ------------------TTINGQIPHNDIVANEPVTEGPQEIELRISGRSRRSAISDDYLIYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEEL

Query:  KSMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTTFLNGNLDE
        KSMNDNEVWDLVELPK+SKRVGCKWVFKTKRDSNGNIER KARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKT FLNGNLDE
Subjt:  KSMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTTFLNGNLDE

Query:  -----------VKG-EHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLAINDFGLLCQTKEFLSKNFEI
                   V+G EHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLA NDFGLLCQTKEFLSKNFE+
Subjt:  -----------VKG-EHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLAINDFGLLCQTKEFLSKNFEI

Query:  KDMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERNQMETIPYASIVGNLLYAQTCTRPDISFVVGM
        KDM EASYVIGIEIFRDRTHGLLGLSQ AYINKVLEKFKM+KCSSSVVP QKGDKFSLMQCPKNELERNQMETI YASIVG+LLYAQTCTR DISF VGM
Subjt:  KDMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERNQMETIPYASIVGNLLYAQTCTRPDISFVVGM

Query:  LGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEAT
        LGRYQSNPGMDHWKA KKV RYLQG K+YMLTYKRSDHLE+I YSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSII ASTMEAEFV CFEAT
Subjt:  LGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEAT

RVW32004.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

0.0e+00

55.54

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Query:  MFIRMTVASNIKSTIKNIEDAKEFMKS----------SLAATLMSTLTNIKFDGSHTIHEHILEMTNLAARLKTMGMKVNENFLVTFILNSLPSDYGTFH
        MF+RMT+A+NIK+++   E A EF+KS          SLA TLM+ LT +K+DG   I +HIL MT  AA+LK +GM ++E+FLV F+LNSLPS +  F 
Subjt:  MFIRMTVASNIKSTIKNIEDAKEFMKS----------SLAATLMSTLTNIKFDGSHTIHEHILEMTNLAARLKTMGMKVNENFLVTFILNSLPSDYGTFH

Query:  MNYNALKDKWN------KPIIHSVNLM--GHK-------GAGKKPGK-KNGKGNHGQLKVKQSSAPIHKKRQIKDKCRFCNKPGHYQKDCLKRKAWFENK
        ++YN   D+WN      K I   V L   GH        G  KK GK K GK N    K            +    C FC K GH +KDC+KRKAWFE +
Subjt:  MNYNALKDKWN------KPIIHSVNLM--GHK-------GAGKKPGK-KNGKGNHGQLKVKQSSAPIHKKRQIKDKCRFCNKPGHYQKDCLKRKAWFENK

Query:  GKHNALVCFESNLTEVPYNTWWIDSGCTIHISNTMQGFLTTEPQTQMR--------------------------------------DSFLWETESNIMEN
        G + + VC+ESNL EVP NTWWIDSG T H++N MQGFLTT    +                                        + F+ E E  + + 
Subjt:  GKHNALVCFESNLTEVPYNTWWIDSGCTIHISNTMQGFLTTEPQTQMR--------------------------------------DSFLWETESNIMEN

Query:  M---------------TRMGQCPGPFAKFLESHGICAQYTMPGTPQQNGVAERRNRTLMNM---------------------------------------
        +                  GQ PGPFAKFLE HGI AQYTMPGTPQQNGVAERRNRTLM M                                       
Subjt:  M---------------TRMGQCPGPFAKFLESHGICAQYTMPGTPQQNGVAERRNRTLMNM---------------------------------------

Query:  ------------------------------KLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETENVRFIENDIISGSLEPTTI---------------
                                      KLDSRT SG+FIGYP KSKGYRFYCPNHS RIVET N RF+EN  ISGS EP  +               
Subjt:  ------------------------------KLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETENVRFIENDIISGSLEPTTI---------------

Query:  --------------------NGQIPHNDIVANEPVTEGPQEIELRISGRSRRSAISDDYLIYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEELK
                            +G +P  +I A E V E PQ   LR S R RR AI+DDY++YL ES++D+ I  DPVSFSQA++ D+S+KW++AM EELK
Subjt:  --------------------NGQIPHNDIVANEPVTEGPQEIELRISGRSRRSAISDDYLIYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEELK

Query:  SMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTTFLNGN----
        SM  N VWDL+ELP   K VGCKWVFKTKRD+ GNIER+KARLVAKG+TQK+GIDYK+TFSPVSKKDSLRIIMALVAH+DLELHQMDVKT FLNGN    
Subjt:  SMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTTFLNGN----

Query:  --LDEVKG------EHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLAINDFGLLCQTKEFLSKNFEIK
           + +KG      +H+VCKLK+SIYGLKQASRQWY+KFN+TITSFGFKENIVD+CIYLK+SGSKFI L+LYVDDILLA +D GLL +TKE+LSKNF + 
Subjt:  --LDEVKG------EHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLAINDFGLLCQTKEFLSKNFEIK

Query:  DMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERNQMETIPYASIVGNLLYAQTCTRPDISFVVGML
        DMGEA+YVIGIEIFRDR+ G+LGLSQK YI++VLE+F M  CSS + P  KGDK S MQCP+N +ER QM+ IPYAS VG+L+YAQTCTRPDISF +GML
Subjt:  DMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERNQMETIPYASIVGNLLYAQTCTRPDISFVVGML

Query:  GRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEATVHGL
        GRYQS+PG +HWKA KKV RYLQGTK+YMLTYKRS+ LE++GYSDSD+ GC+D+ KST G++F+LA GAISWKS KQSI  +STMEAEFVACFEA+ H L
Subjt:  GRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEATVHGL

Query:  WLRNFISGLGIVDSIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKEEVQKQRVSIEYISTKLMIADPLTKGLPPKTFNDHVERKGI
        WLRNFISGLG+VDSIAKPLRIYCDN+AAVFFSKN K+S G+KHM+LKY  VKE VQKQ+VSIE I T LM+ADPLTKGLPPK + +HV R G+
Subjt:  WLRNFISGLGIVDSIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKEEVQKQRVSIEYISTKLMIADPLTKGLPPKTFNDHVERKGI

RVX15925.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

0.0e+00

54.1

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Query:  MFIRMTVASNIKSTIKNIEDAKEFMKS----------SLAATLMSTLTNIKFDGSHTIHEHILEMTNLAARLKTMGMKVNENFLVTFILNSLPSDYGTFH
        MF+RMT+A+NIK+++   E A EF+KS          SLA TLM+ LT +K+DG   I +HIL MT  AA+LK +GM ++E+FLV F+LNSLPS +  F 
Subjt:  MFIRMTVASNIKSTIKNIEDAKEFMKS----------SLAATLMSTLTNIKFDGSHTIHEHILEMTNLAARLKTMGMKVNENFLVTFILNSLPSDYGTFH

Query:  MNYNALKDKWN------KPIIHSVNLM--GHK-------GAGKKPGK-KNGKGNHGQLKVKQSSAPIHKKRQIKDKCRFCNKPGHYQKDCLKRKAWFENK
        ++YN   D+WN      K I   V L   GH        G  KK GK K GK N    K            +    C FC K GH +KDC+KRKAWFE +
Subjt:  MNYNALKDKWN------KPIIHSVNLM--GHK-------GAGKKPGK-KNGKGNHGQLKVKQSSAPIHKKRQIKDKCRFCNKPGHYQKDCLKRKAWFENK

Query:  GKHNALVCFESNLTEVPYNTWWIDSGCTIHISNTMQGFLTTEPQTQMRDSFLW-------------------ET--------------------------
        G + + VC+ESNL EVP NTWWIDSG T H++N MQGFLTT  + +  + FL+                   ET                          
Subjt:  GKHNALVCFESNLTEVPYNTWWIDSGCTIHISNTMQGFLTTEPQTQMRDSFLW-------------------ET--------------------------

Query:  -----------ESNIMENMTRMG---------------------------------------QCPGPFAKFLESHGICAQYTMPGTPQQNGVAERRNRTL
                   + ++M N   +G                                       Q PGPFAKFLE HGI AQYTMPGTPQQNGVAERRNRTL
Subjt:  -----------ESNIMENMTRMG---------------------------------------QCPGPFAKFLESHGICAQYTMPGTPQQNGVAERRNRTL

Query:  MNM---------------------------------------------------------------------KLDSRTTSGFFIGYPEKSKGYRFYCPNH
        M M                                                                     KLDSRT SG+FIGYP+KSKGYRFYCPNH
Subjt:  MNM---------------------------------------------------------------------KLDSRTTSGFFIGYPEKSKGYRFYCPNH

Query:  STRIVETENVRFIENDIISGSLEPTTI-----------------------------------NGQIPHNDIVANEPVTEGPQEIELRISGRSRRSAISDD
        S RIVET N RF+EN  ISGS EP  +                                   +G +P  +I A E   E PQ   LR S R RR AI+DD
Subjt:  STRIVETENVRFIENDIISGSLEPTTI-----------------------------------NGQIPHNDIVANEPVTEGPQEIELRISGRSRRSAISDD

Query:  YLIYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKE
        Y++YL ES+FD+ I  DPVSFSQA++ D+S+KW++AM EELKSM  N VWDL+ELP   K V CKWVFKTKRD+ GNIER+KARLVAKG+TQK+GIDYK+
Subjt:  YLIYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKE

Query:  TFSPVSKKDSLRIIMALVAHYDLELHQMDVKTTFLNGNLDE-----------VKG-EHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIY
        TFSPVSKKDSLRIIMALVAH+DLELHQMDVKT FLNGNLDE            KG EH+VCKLK+SIYGLKQASRQWY+KFN+TITSFGFKENIVD+CIY
Subjt:  TFSPVSKKDSLRIIMALVAHYDLELHQMDVKTTFLNGNLDE-----------VKG-EHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIY

Query:  LKISGSKFIILVLYVDDILLAINDFGLLCQTKEFLSKNFEIKDMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLM
        LK+SGSKFI L+LYVDDILLA +D GLL +TKE+LSKNF + DMGEA+YVIGIEIFRDR+ G+LGLSQK YI++VLE+F M  CSS + P  KGDK S M
Subjt:  LKISGSKFIILVLYVDDILLAINDFGLLCQTKEFLSKNFEIKDMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLM

Query:  QCPKNELERNQMETIPYASIVGNLLYAQTCTRPDISFVVGMLGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKST
        QCP+N +ER QM+ IPYAS+VG+L+YAQTCTRPDISF VGMLGRYQS+PG +HWKA KKV RYLQGTK+YMLTYKRS+ LE++GYSDSD+ GC+D+ KST
Subjt:  QCPKNELERNQMETIPYASIVGNLLYAQTCTRPDISFVVGMLGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKST

Query:  FGYLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEATVHGLWLRNFISGLGIVDSIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKEEVQKQ
         G++F+LA GAISWKS KQSI  +STMEAEFVACFEA+ H LWLRNFISGLG+VDSIAKPLRIYCDN+AAVFFSKN K+S G+KHM+LKY  VKE VQKQ
Subjt:  FGYLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEATVHGLWLRNFISGLGIVDSIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKEEVQKQ

Query:  RVSIEYISTKLMIADPLTKGLPPKTFNDHVERKGI
        +VSIE I T LM+ADPLTKGLPPK + +HV R G+
Subjt:  RVSIEYISTKLMIADPLTKGLPPKTFNDHVERKGI

RZC25410.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja]

0.0e+00

53.38

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Query:  MFIRMTVASNIKSTIKNIEDAKEFM----------KSSLAATLMSTLTNIKFDGSHTIHEHILEMTNLAARLKTMGMKVNENFLVTFILNSLPSDYGTFH
        MF+RMTVA +IK+ +   + AKEFM            SLA TLMSTLT +KFDGS T+HEH++EMTN+AARLKT+GM VNENFLV FILNSLPS+YG F 
Subjt:  MFIRMTVASNIKSTIKNIEDAKEFM----------KSSLAATLMSTLTNIKFDGSHTIHEHILEMTNLAARLKTMGMKVNENFLVTFILNSLPSDYGTFH

Query:  MNYNALKDKWNKPIIHS-------------------VNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKRQIKDKCRFCNKPGHYQKDCLKRKAWF
        M+YN +KDKWN   +HS                   V+  G++GAGKK  KK+ KG  G LK+K     I KK    + C FC K GH+QKDC KRK+WF
Subjt:  MNYNALKDKWNKPIIHS-------------------VNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKRQIKDKCRFCNKPGHYQKDCLKRKAWF

Query:  ENKGKHNALVCFESNLTEVPYNTWWIDSGCTIHISNTMQGFLTTE---PQTQM-----------------------------------------------
        E KG+ NALVCFESNLTEVP+NTWWIDSGCT H+SNTMQGFLT +   P  +                                                
Subjt:  ENKGKHNALVCFESNLTEVPYNTWWIDSGCTIHISNTMQGFLTTE---PQTQM-----------------------------------------------

Query:  --------------------------------------------------------------RDSFLWE-------------------------TESNI-
                                                                      R +FLW                          T+ NI 
Subjt:  --------------------------------------------------------------RDSFLWE-------------------------TESNI-

Query:  ------------------------------------------------MENMTR----------------------------------------------
                                                        +++ +R                                              
Subjt:  ------------------------------------------------MENMTR----------------------------------------------

Query:  ---MGQCPGPFAKFLESHGICAQYTMPGTPQQNGVAERRNRTLMNM------------------------------------------------------
            GQ P PFAK L+  GICAQYTMPGTPQQNGV+ERRN+TLM+M                                                      
Subjt:  ---MGQCPGPFAKFLESHGICAQYTMPGTPQQNGVAERRNRTLMNM------------------------------------------------------

Query:  ---------------KLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETENVRFIENDIISGSLEP-----------------------------TTIN
                       KLD+RT SG+FIGYPEKSKGY FYCPNHSTRIVET N RFIEN  ISGS  P                             T  N
Subjt:  ---------------KLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETENVRFIENDIISGSLEP-----------------------------TTIN

Query:  GQIPHND--IVANEPVTEGPQEIELRISGRSRRSAISDDYLIYLHESEFDLSI-DNDPVSFSQAIKGDNSTKWLDAMKEELKSMNDNEVWDLVELPKESK
         ++ HND  ++ NEP+ E PQE+ LR S R RR AIS+DY++YLHE+E +LSI DNDPVSFSQAI  DNS KWL+AMKEE+ SM  N+VWDLVELPK  K
Subjt:  GQIPHND--IVANEPVTEGPQEIELRISGRSRRSAISDDYLIYLHESEFDLSI-DNDPVSFSQAIKGDNSTKWLDAMKEELKSMNDNEVWDLVELPKESK

Query:  RVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTTFLNGNLDE-----------VKG-EHMV
        RVG KWVFKTKRDS+GN+ERYKARLVAKG+TQKDGIDYKETFSPVS+KDS RIIMALVAHYDLELHQMDVKT FLNG+L+E           V+G EHMV
Subjt:  RVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTTFLNGNLDE-----------VKG-EHMV

Query:  CKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLAINDFGLLCQTKEFLSKNFEIKDMGEASYVIGIEIFRDRT
        CKLK+SIYGLKQASRQWYLKFNDTI SFGFKEN VDRC+YLK+SGSK + LVLYVDDILLA ND GL  +TK+FLS NFE+KDMGEASYVIGIEIFR+R+
Subjt:  CKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLAINDFGLLCQTKEFLSKNFEIKDMGEASYVIGIEIFRDRT

Query:  HGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERNQMETIPYASIVGNLLYAQTCTRPDISFVVGMLGRYQSNPGMDHWKAVKKV
         GLLGLSQKAYINKVLE+F+M+KCS+S VP QKGDKFSL QCPKN+LER QME IPYAS+VG+++YAQTCTRPDISF  GMLGRYQSNPGM+HWKA KKV
Subjt:  HGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERNQMETIPYASIVGNLLYAQTCTRPDISFVVGMLGRYQSNPGMDHWKAVKKV

Query:  SRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEATVHGLWLRNFISGLGIVDSIAKP
         RYLQGTK+++LTYKRSDHLE+IGYSDSDFAGCVDTRKST G++FLLA GAISWKSAKQS++ ASTMEA FVACFEAT+   WLRNFISGLGIVDSIA+P
Subjt:  SRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEATVHGLWLRNFISGLGIVDSIAKP

Query:  LRIYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKEEVQKQRVSIEYISTKLMIADPLTKGLPPKTFNDHVER
        L++YCDNSAAVFFSKNDKYS GAKHMELKYFAVKEEVQKQRVSIE+I+TKLMIADPLTKGLPPKTF ++VE+
Subjt:  LRIYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKEEVQKQRVSIEYISTKLMIADPLTKGLPPKTFNDHVER

TYK04201.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

0.0e+00

76.81

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Query:  MFIRMTVASNIKSTIKNIEDAKEFMKS------------SLAATLMSTLTNIKFDGSHTIHEHILEMTNLAARLKTMGMKVNENFLVTFILNSLPSDYGT
        MFIRMTVA+NIK TIKN EDAKEFMKS            SLA TLMSTLTNIKFDGS TIHEHILEMTNLAARLKTMGM+VNENFLVTFILNSLPS+YG 
Subjt:  MFIRMTVASNIKSTIKNIEDAKEFMKS------------SLAATLMSTLTNIKFDGSHTIHEHILEMTNLAARLKTMGMKVNENFLVTFILNSLPSDYGT

Query:  FHMNYNALKDKWN----------------KPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKRQIKDKCRFCNKPGHYQKDCLKRKAWFE
        FHMNYN LKDKWN                KPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKK +IKDKCRFCNKPGHYQKDCLKRKAWFE
Subjt:  FHMNYNALKDKWN----------------KPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKRQIKDKCRFCNKPGHYQKDCLKRKAWFE

Query:  NKGKHNALVCFESNLTEVPYNTWWIDSGCTIHISNTMQGFLTTEPQTQMRDSFLWETESNIMENMTRMGQCPGPFAKFLESHGICAQ-----YTMPGTPQ
        NK +                    +D    I                 +R     E      EN    GQCPGPFAKFLESHGICAQ     YTMPGTPQ
Subjt:  NKGKHNALVCFESNLTEVPYNTWWIDSGCTIHISNTMQGFLTTEPQTQMRDSFLWETESNIMENMTRMGQCPGPFAKFLESHGICAQ-----YTMPGTPQ

Query:  QNGVAERR-------------NRTLMN---MKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETENVRFIENDIISGSLEP-----------------
        QN VAER+                + N    K DSRTTSGFFIGY EKSKGYRFYCPNHSTRIVET NVRFIENDII+GSLEP                 
Subjt:  QNGVAERR-------------NRTLMN---MKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETENVRFIENDIISGSLEP-----------------

Query:  ------------------TTINGQIPHNDIVANEPVTEGPQEIELRISGRSRRSAISDDYLIYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEEL
                            INGQ PHNDIV NEPVTEGPQEIELR S RSRRSAISDDYL+YLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEEL
Subjt:  ------------------TTINGQIPHNDIVANEPVTEGPQEIELRISGRSRRSAISDDYLIYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEEL

Query:  KSMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTTFLNGNLDE
        KSMNDNEVWDLVELPK+SKRVGCKWVFKTKRDSNGNIER KARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKT FLNGNLDE
Subjt:  KSMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTTFLNGNLDE

Query:  -----------VKG-EHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLAINDFGLLCQTKEFLSKNFEI
                   V+G EHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLA NDFGLLCQTKEFLSKNFE+
Subjt:  -----------VKG-EHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLAINDFGLLCQTKEFLSKNFEI

Query:  KDMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERNQMETIPYASIVGNLLYAQTCTRPDISFVVGM
        KDM EASYVIGIEIFRDRTHGLLGLSQ AYINKVLEKFKM+KCSSSVVP QKGDKFSLMQCPKNELERNQMETI YASIVG+LLYAQTCTR DISF VGM
Subjt:  KDMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERNQMETIPYASIVGNLLYAQTCTRPDISFVVGM

Query:  LGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEAT
        LGRYQSNPGMDHWKA KKV RYLQG K+YMLTYKRSDHLE+I YSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSII ASTMEAEFV CFEAT
Subjt:  LGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEAT

TrEMBL top hits

e value

%identity

Alignment

A0A438D994 Retrovirus-related Pol polyprotein from transposon TNT 1-94

0.0e+00

55.54

Show/hide

Query:  MFIRMTVASNIKSTIKNIEDAKEFMKS----------SLAATLMSTLTNIKFDGSHTIHEHILEMTNLAARLKTMGMKVNENFLVTFILNSLPSDYGTFH
        MF+RMT+A+NIK+++   E A EF+KS          SLA TLM+ LT +K+DG   I +HIL MT  AA+LK +GM ++E+FLV F+LNSLPS +  F 
Subjt:  MFIRMTVASNIKSTIKNIEDAKEFMKS----------SLAATLMSTLTNIKFDGSHTIHEHILEMTNLAARLKTMGMKVNENFLVTFILNSLPSDYGTFH

Query:  MNYNALKDKWN------KPIIHSVNLM--GHK-------GAGKKPGK-KNGKGNHGQLKVKQSSAPIHKKRQIKDKCRFCNKPGHYQKDCLKRKAWFENK
        ++YN   D+WN      K I   V L   GH        G  KK GK K GK N    K            +    C FC K GH +KDC+KRKAWFE +
Subjt:  MNYNALKDKWN------KPIIHSVNLM--GHK-------GAGKKPGK-KNGKGNHGQLKVKQSSAPIHKKRQIKDKCRFCNKPGHYQKDCLKRKAWFENK

Query:  GKHNALVCFESNLTEVPYNTWWIDSGCTIHISNTMQGFLTTEPQTQMR--------------------------------------DSFLWETESNIMEN
        G + + VC+ESNL EVP NTWWIDSG T H++N MQGFLTT    +                                        + F+ E E  + + 
Subjt:  GKHNALVCFESNLTEVPYNTWWIDSGCTIHISNTMQGFLTTEPQTQMR--------------------------------------DSFLWETESNIMEN

Query:  M---------------TRMGQCPGPFAKFLESHGICAQYTMPGTPQQNGVAERRNRTLMNM---------------------------------------
        +                  GQ PGPFAKFLE HGI AQYTMPGTPQQNGVAERRNRTLM M                                       
Subjt:  M---------------TRMGQCPGPFAKFLESHGICAQYTMPGTPQQNGVAERRNRTLMNM---------------------------------------

Query:  ------------------------------KLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETENVRFIENDIISGSLEPTTI---------------
                                      KLDSRT SG+FIGYP KSKGYRFYCPNHS RIVET N RF+EN  ISGS EP  +               
Subjt:  ------------------------------KLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETENVRFIENDIISGSLEPTTI---------------

Query:  --------------------NGQIPHNDIVANEPVTEGPQEIELRISGRSRRSAISDDYLIYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEELK
                            +G +P  +I A E V E PQ   LR S R RR AI+DDY++YL ES++D+ I  DPVSFSQA++ D+S+KW++AM EELK
Subjt:  --------------------NGQIPHNDIVANEPVTEGPQEIELRISGRSRRSAISDDYLIYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEELK

Query:  SMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTTFLNGN----
        SM  N VWDL+ELP   K VGCKWVFKTKRD+ GNIER+KARLVAKG+TQK+GIDYK+TFSPVSKKDSLRIIMALVAH+DLELHQMDVKT FLNGN    
Subjt:  SMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTTFLNGN----

Query:  --LDEVKG------EHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLAINDFGLLCQTKEFLSKNFEIK
           + +KG      +H+VCKLK+SIYGLKQASRQWY+KFN+TITSFGFKENIVD+CIYLK+SGSKFI L+LYVDDILLA +D GLL +TKE+LSKNF + 
Subjt:  --LDEVKG------EHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLAINDFGLLCQTKEFLSKNFEIK

Query:  DMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERNQMETIPYASIVGNLLYAQTCTRPDISFVVGML
        DMGEA+YVIGIEIFRDR+ G+LGLSQK YI++VLE+F M  CSS + P  KGDK S MQCP+N +ER QM+ IPYAS VG+L+YAQTCTRPDISF +GML
Subjt:  DMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERNQMETIPYASIVGNLLYAQTCTRPDISFVVGML

Query:  GRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEATVHGL
        GRYQS+PG +HWKA KKV RYLQGTK+YMLTYKRS+ LE++GYSDSD+ GC+D+ KST G++F+LA GAISWKS KQSI  +STMEAEFVACFEA+ H L
Subjt:  GRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEATVHGL

Query:  WLRNFISGLGIVDSIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKEEVQKQRVSIEYISTKLMIADPLTKGLPPKTFNDHVERKGI
        WLRNFISGLG+VDSIAKPLRIYCDN+AAVFFSKN K+S G+KHM+LKY  VKE VQKQ+VSIE I T LM+ADPLTKGLPPK + +HV R G+
Subjt:  WLRNFISGLGIVDSIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKEEVQKQRVSIEYISTKLMIADPLTKGLPPKTFNDHVERKGI

A0A438K404 Retrovirus-related Pol polyprotein from transposon TNT 1-94

0.0e+00

54.1

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Query:  MFIRMTVASNIKSTIKNIEDAKEFMKS----------SLAATLMSTLTNIKFDGSHTIHEHILEMTNLAARLKTMGMKVNENFLVTFILNSLPSDYGTFH
        MF+RMT+A+NIK+++   E A EF+KS          SLA TLM+ LT +K+DG   I +HIL MT  AA+LK +GM ++E+FLV F+LNSLPS +  F 
Subjt:  MFIRMTVASNIKSTIKNIEDAKEFMKS----------SLAATLMSTLTNIKFDGSHTIHEHILEMTNLAARLKTMGMKVNENFLVTFILNSLPSDYGTFH

Query:  MNYNALKDKWN------KPIIHSVNLM--GHK-------GAGKKPGK-KNGKGNHGQLKVKQSSAPIHKKRQIKDKCRFCNKPGHYQKDCLKRKAWFENK
        ++YN   D+WN      K I   V L   GH        G  KK GK K GK N    K            +    C FC K GH +KDC+KRKAWFE +
Subjt:  MNYNALKDKWN------KPIIHSVNLM--GHK-------GAGKKPGK-KNGKGNHGQLKVKQSSAPIHKKRQIKDKCRFCNKPGHYQKDCLKRKAWFENK

Query:  GKHNALVCFESNLTEVPYNTWWIDSGCTIHISNTMQGFLTTEPQTQMRDSFLW-------------------ET--------------------------
        G + + VC+ESNL EVP NTWWIDSG T H++N MQGFLTT  + +  + FL+                   ET                          
Subjt:  GKHNALVCFESNLTEVPYNTWWIDSGCTIHISNTMQGFLTTEPQTQMRDSFLW-------------------ET--------------------------

Query:  -----------ESNIMENMTRMG---------------------------------------QCPGPFAKFLESHGICAQYTMPGTPQQNGVAERRNRTL
                   + ++M N   +G                                       Q PGPFAKFLE HGI AQYTMPGTPQQNGVAERRNRTL
Subjt:  -----------ESNIMENMTRMG---------------------------------------QCPGPFAKFLESHGICAQYTMPGTPQQNGVAERRNRTL

Query:  MNM---------------------------------------------------------------------KLDSRTTSGFFIGYPEKSKGYRFYCPNH
        M M                                                                     KLDSRT SG+FIGYP+KSKGYRFYCPNH
Subjt:  MNM---------------------------------------------------------------------KLDSRTTSGFFIGYPEKSKGYRFYCPNH

Query:  STRIVETENVRFIENDIISGSLEPTTI-----------------------------------NGQIPHNDIVANEPVTEGPQEIELRISGRSRRSAISDD
        S RIVET N RF+EN  ISGS EP  +                                   +G +P  +I A E   E PQ   LR S R RR AI+DD
Subjt:  STRIVETENVRFIENDIISGSLEPTTI-----------------------------------NGQIPHNDIVANEPVTEGPQEIELRISGRSRRSAISDD

Query:  YLIYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKE
        Y++YL ES+FD+ I  DPVSFSQA++ D+S+KW++AM EELKSM  N VWDL+ELP   K V CKWVFKTKRD+ GNIER+KARLVAKG+TQK+GIDYK+
Subjt:  YLIYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKE

Query:  TFSPVSKKDSLRIIMALVAHYDLELHQMDVKTTFLNGNLDE-----------VKG-EHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIY
        TFSPVSKKDSLRIIMALVAH+DLELHQMDVKT FLNGNLDE            KG EH+VCKLK+SIYGLKQASRQWY+KFN+TITSFGFKENIVD+CIY
Subjt:  TFSPVSKKDSLRIIMALVAHYDLELHQMDVKTTFLNGNLDE-----------VKG-EHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIY

Query:  LKISGSKFIILVLYVDDILLAINDFGLLCQTKEFLSKNFEIKDMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLM
        LK+SGSKFI L+LYVDDILLA +D GLL +TKE+LSKNF + DMGEA+YVIGIEIFRDR+ G+LGLSQK YI++VLE+F M  CSS + P  KGDK S M
Subjt:  LKISGSKFIILVLYVDDILLAINDFGLLCQTKEFLSKNFEIKDMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLM

Query:  QCPKNELERNQMETIPYASIVGNLLYAQTCTRPDISFVVGMLGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKST
        QCP+N +ER QM+ IPYAS+VG+L+YAQTCTRPDISF VGMLGRYQS+PG +HWKA KKV RYLQGTK+YMLTYKRS+ LE++GYSDSD+ GC+D+ KST
Subjt:  QCPKNELERNQMETIPYASIVGNLLYAQTCTRPDISFVVGMLGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKST

Query:  FGYLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEATVHGLWLRNFISGLGIVDSIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKEEVQKQ
         G++F+LA GAISWKS KQSI  +STMEAEFVACFEA+ H LWLRNFISGLG+VDSIAKPLRIYCDN+AAVFFSKN K+S G+KHM+LKY  VKE VQKQ
Subjt:  FGYLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEATVHGLWLRNFISGLGIVDSIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKEEVQKQ

Query:  RVSIEYISTKLMIADPLTKGLPPKTFNDHVERKGI
        +VSIE I T LM+ADPLTKGLPPK + +HV R G+
Subjt:  RVSIEYISTKLMIADPLTKGLPPKTFNDHVERKGI

A0A445LQ30 Retrovirus-related Pol polyprotein from transposon TNT 1-94

0.0e+00

53.38

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Query:  MFIRMTVASNIKSTIKNIEDAKEFM----------KSSLAATLMSTLTNIKFDGSHTIHEHILEMTNLAARLKTMGMKVNENFLVTFILNSLPSDYGTFH
        MF+RMTVA +IK+ +   + AKEFM            SLA TLMSTLT +KFDGS T+HEH++EMTN+AARLKT+GM VNENFLV FILNSLPS+YG F 
Subjt:  MFIRMTVASNIKSTIKNIEDAKEFM----------KSSLAATLMSTLTNIKFDGSHTIHEHILEMTNLAARLKTMGMKVNENFLVTFILNSLPSDYGTFH

Query:  MNYNALKDKWNKPIIHS-------------------VNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKRQIKDKCRFCNKPGHYQKDCLKRKAWF
        M+YN +KDKWN   +HS                   V+  G++GAGKK  KK+ KG  G LK+K     I KK    + C FC K GH+QKDC KRK+WF
Subjt:  MNYNALKDKWNKPIIHS-------------------VNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKRQIKDKCRFCNKPGHYQKDCLKRKAWF

Query:  ENKGKHNALVCFESNLTEVPYNTWWIDSGCTIHISNTMQGFLTTE---PQTQM-----------------------------------------------
        E KG+ NALVCFESNLTEVP+NTWWIDSGCT H+SNTMQGFLT +   P  +                                                
Subjt:  ENKGKHNALVCFESNLTEVPYNTWWIDSGCTIHISNTMQGFLTTE---PQTQM-----------------------------------------------

Query:  --------------------------------------------------------------RDSFLWE-------------------------TESNI-
                                                                      R +FLW                          T+ NI 
Subjt:  --------------------------------------------------------------RDSFLWE-------------------------TESNI-

Query:  ------------------------------------------------MENMTR----------------------------------------------
                                                        +++ +R                                              
Subjt:  ------------------------------------------------MENMTR----------------------------------------------

Query:  ---MGQCPGPFAKFLESHGICAQYTMPGTPQQNGVAERRNRTLMNM------------------------------------------------------
            GQ P PFAK L+  GICAQYTMPGTPQQNGV+ERRN+TLM+M                                                      
Subjt:  ---MGQCPGPFAKFLESHGICAQYTMPGTPQQNGVAERRNRTLMNM------------------------------------------------------

Query:  ---------------KLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETENVRFIENDIISGSLEP-----------------------------TTIN
                       KLD+RT SG+FIGYPEKSKGY FYCPNHSTRIVET N RFIEN  ISGS  P                             T  N
Subjt:  ---------------KLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETENVRFIENDIISGSLEP-----------------------------TTIN

Query:  GQIPHND--IVANEPVTEGPQEIELRISGRSRRSAISDDYLIYLHESEFDLSI-DNDPVSFSQAIKGDNSTKWLDAMKEELKSMNDNEVWDLVELPKESK
         ++ HND  ++ NEP+ E PQE+ LR S R RR AIS+DY++YLHE+E +LSI DNDPVSFSQAI  DNS KWL+AMKEE+ SM  N+VWDLVELPK  K
Subjt:  GQIPHND--IVANEPVTEGPQEIELRISGRSRRSAISDDYLIYLHESEFDLSI-DNDPVSFSQAIKGDNSTKWLDAMKEELKSMNDNEVWDLVELPKESK

Query:  RVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTTFLNGNLDE-----------VKG-EHMV
        RVG KWVFKTKRDS+GN+ERYKARLVAKG+TQKDGIDYKETFSPVS+KDS RIIMALVAHYDLELHQMDVKT FLNG+L+E           V+G EHMV
Subjt:  RVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTTFLNGNLDE-----------VKG-EHMV

Query:  CKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLAINDFGLLCQTKEFLSKNFEIKDMGEASYVIGIEIFRDRT
        CKLK+SIYGLKQASRQWYLKFNDTI SFGFKEN VDRC+YLK+SGSK + LVLYVDDILLA ND GL  +TK+FLS NFE+KDMGEASYVIGIEIFR+R+
Subjt:  CKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLAINDFGLLCQTKEFLSKNFEIKDMGEASYVIGIEIFRDRT

Query:  HGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERNQMETIPYASIVGNLLYAQTCTRPDISFVVGMLGRYQSNPGMDHWKAVKKV
         GLLGLSQKAYINKVLE+F+M+KCS+S VP QKGDKFSL QCPKN+LER QME IPYAS+VG+++YAQTCTRPDISF  GMLGRYQSNPGM+HWKA KKV
Subjt:  HGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERNQMETIPYASIVGNLLYAQTCTRPDISFVVGMLGRYQSNPGMDHWKAVKKV

Query:  SRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEATVHGLWLRNFISGLGIVDSIAKP
         RYLQGTK+++LTYKRSDHLE+IGYSDSDFAGCVDTRKST G++FLLA GAISWKSAKQS++ ASTMEA FVACFEAT+   WLRNFISGLGIVDSIA+P
Subjt:  SRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEATVHGLWLRNFISGLGIVDSIAKP

Query:  LRIYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKEEVQKQRVSIEYISTKLMIADPLTKGLPPKTFNDHVER
        L++YCDNSAAVFFSKNDKYS GAKHMELKYFAVKEEVQKQRVSIE+I+TKLMIADPLTKGLPPKTF ++VE+
Subjt:  LRIYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKEEVQKQRVSIEYISTKLMIADPLTKGLPPKTFNDHVER

A0A5A7UG95 Retrovirus-related Pol polyprotein from transposon TNT 1-94

0.0e+00

76.7

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Query:  MFIRMTVASNIKSTIKNIEDAKEFMKS------------SLAATLMSTLTNIKFDGSHTIHEHILEMTNLAARLKTMGMKVNENFLVTFILNSLPSDYGT
        MFIRMTVA+NIK TIKN EDAKEFMKS            SLA TLMSTLTNIKFDGS TIHEHILEMTNLAARLKTMGM+VNENFLV FILNSLPS+YG 
Subjt:  MFIRMTVASNIKSTIKNIEDAKEFMKS------------SLAATLMSTLTNIKFDGSHTIHEHILEMTNLAARLKTMGMKVNENFLVTFILNSLPSDYGT

Query:  FHMNYNALKDKWN----------------KPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKRQIKDKCRFCNKPGHYQKDCLKRKAWFE
        FHMNYN LKDKWN                KPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKK QIKDKCRFCNKPGHYQKDCLKRKAWFE
Subjt:  FHMNYNALKDKWN----------------KPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKRQIKDKCRFCNKPGHYQKDCLKRKAWFE

Query:  NKGKHNALVCFESNLTEVPYNTWWIDSGCTIHISNTMQGFLTTEPQTQMRDSFLWETESNIMENMTRMGQCPGPFAKFLESHGICAQ-----YTMPGTPQ
        NK +                    +D    I                 +R     E      EN    GQCPGPFAKFLESHGICAQ     YTMPGTPQ
Subjt:  NKGKHNALVCFESNLTEVPYNTWWIDSGCTIHISNTMQGFLTTEPQTQMRDSFLWETESNIMENMTRMGQCPGPFAKFLESHGICAQ-----YTMPGTPQ

Query:  QNGVAERR-------------NRTLMN---MKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETENVRFIENDIISGSLEP-----------------
        QN VAER+                + N    K DSRTTSGFFIGY EKSKGYRFYCPNHSTRIVET NVRFIENDII+GSLEP                 
Subjt:  QNGVAERR-------------NRTLMN---MKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETENVRFIENDIISGSLEP-----------------

Query:  ------------------TTINGQIPHNDIVANEPVTEGPQEIELRISGRSRRSAISDDYLIYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEEL
                            INGQ PHNDIV NEPVTEGPQEIELR S RSRRSAISDDYL+YLHESEFDLSIDNDPVSFSQAIKG+NSTKWLDAMKEEL
Subjt:  ------------------TTINGQIPHNDIVANEPVTEGPQEIELRISGRSRRSAISDDYLIYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEEL

Query:  KSMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTTFLNGNLDE
        KSMNDNEVWDLVELPK+SKRVGCKWVFKTKRDSNGNIER KARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKT FLNGNLDE
Subjt:  KSMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTTFLNGNLDE

Query:  -----------VKG-EHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLAINDFGLLCQTKEFLSKNFEI
                   V+G EHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLA NDFGLLCQTKEFLSKNFE+
Subjt:  -----------VKG-EHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLAINDFGLLCQTKEFLSKNFEI

Query:  KDMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERNQMETIPYASIVGNLLYAQTCTRPDISFVVGM
        KDM EASYVIGIEIFRDRTHGLLGLSQ AYINKVLEKFKM+KCSSSVVP QKGDKFSLMQCPKNELERNQMETI YASIVG+LLYAQTCTR DISF VGM
Subjt:  KDMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERNQMETIPYASIVGNLLYAQTCTRPDISFVVGM

Query:  LGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEAT
        LGRYQSNPGMDHWKA KKV RYLQG K+YMLTYKRSDHLE+I YSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSII ASTMEAEFV CFEAT
Subjt:  LGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEAT

A0A5D3BWW5 Retrovirus-related Pol polyprotein from transposon TNT 1-94

0.0e+00

76.81

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Query:  MFIRMTVASNIKSTIKNIEDAKEFMKS------------SLAATLMSTLTNIKFDGSHTIHEHILEMTNLAARLKTMGMKVNENFLVTFILNSLPSDYGT
        MFIRMTVA+NIK TIKN EDAKEFMKS            SLA TLMSTLTNIKFDGS TIHEHILEMTNLAARLKTMGM+VNENFLVTFILNSLPS+YG 
Subjt:  MFIRMTVASNIKSTIKNIEDAKEFMKS------------SLAATLMSTLTNIKFDGSHTIHEHILEMTNLAARLKTMGMKVNENFLVTFILNSLPSDYGT

Query:  FHMNYNALKDKWN----------------KPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKRQIKDKCRFCNKPGHYQKDCLKRKAWFE
        FHMNYN LKDKWN                KPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKK +IKDKCRFCNKPGHYQKDCLKRKAWFE
Subjt:  FHMNYNALKDKWN----------------KPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKRQIKDKCRFCNKPGHYQKDCLKRKAWFE

Query:  NKGKHNALVCFESNLTEVPYNTWWIDSGCTIHISNTMQGFLTTEPQTQMRDSFLWETESNIMENMTRMGQCPGPFAKFLESHGICAQ-----YTMPGTPQ
        NK +                    +D    I                 +R     E      EN    GQCPGPFAKFLESHGICAQ     YTMPGTPQ
Subjt:  NKGKHNALVCFESNLTEVPYNTWWIDSGCTIHISNTMQGFLTTEPQTQMRDSFLWETESNIMENMTRMGQCPGPFAKFLESHGICAQ-----YTMPGTPQ

Query:  QNGVAERR-------------NRTLMN---MKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETENVRFIENDIISGSLEP-----------------
        QN VAER+                + N    K DSRTTSGFFIGY EKSKGYRFYCPNHSTRIVET NVRFIENDII+GSLEP                 
Subjt:  QNGVAERR-------------NRTLMN---MKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETENVRFIENDIISGSLEP-----------------

Query:  ------------------TTINGQIPHNDIVANEPVTEGPQEIELRISGRSRRSAISDDYLIYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEEL
                            INGQ PHNDIV NEPVTEGPQEIELR S RSRRSAISDDYL+YLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEEL
Subjt:  ------------------TTINGQIPHNDIVANEPVTEGPQEIELRISGRSRRSAISDDYLIYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEEL

Query:  KSMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTTFLNGNLDE
        KSMNDNEVWDLVELPK+SKRVGCKWVFKTKRDSNGNIER KARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKT FLNGNLDE
Subjt:  KSMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTTFLNGNLDE

Query:  -----------VKG-EHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLAINDFGLLCQTKEFLSKNFEI
                   V+G EHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLA NDFGLLCQTKEFLSKNFE+
Subjt:  -----------VKG-EHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLAINDFGLLCQTKEFLSKNFEI

Query:  KDMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERNQMETIPYASIVGNLLYAQTCTRPDISFVVGM
        KDM EASYVIGIEIFRDRTHGLLGLSQ AYINKVLEKFKM+KCSSSVVP QKGDKFSLMQCPKNELERNQMETI YASIVG+LLYAQTCTR DISF VGM
Subjt:  KDMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERNQMETIPYASIVGNLLYAQTCTRPDISFVVGM

Query:  LGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEAT
        LGRYQSNPGMDHWKA KKV RYLQG K+YMLTYKRSDHLE+I YSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSII ASTMEAEFV CFEAT
Subjt:  LGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEAT

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

2.5e-95

37.76

Show/hide

Query:  SIDND-PVSFSQAIKGDNSTKWLDAMKEELKSMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSL
        +I ND P SF +    D+ + W +A+  EL +   N  W + + P+    V  +WVF  K +  GN  RYKARLVA+G+TQK  IDY+ETF+PV++  S 
Subjt:  SIDND-PVSFSQAIKGDNSTKWLDAMKEELKSMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSL

Query:  RIIMALVAHYDLELHQMDVKTTFLNGNLDE----------VKGEHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISG--SKFIIL
        R I++LV  Y+L++HQMDVKT FLNG L E                VCKL ++IYGLKQA+R W+  F   +    F  + VDRCIY+   G  ++ I +
Subjt:  RIIMALVAHYDLELHQMDVKTTFLNGNLDE----------VKGEHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISG--SKFIIL

Query:  VLYVDDILLAINDFGLLCQTKEFLSKNFEIKDMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERNQ
        +LYVDD+++A  D   +   K +L + F + D+ E  + IGI I  +     + LSQ AY+ K+L KF M+ C++   P      + L       L  ++
Subjt:  VLYVDDILLAINDFGLLCQTKEFLSKNFEIKDMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERNQ

Query:  METIPYASIVGNLLYAQTCTRPDISFVVGMLGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLE--MIGYSDSDFAGCVDTRKSTFGYLFLLAE
            P  S++G L+Y   CTRPD++  V +L RY S    + W+ +K+V RYL+GT +  L +K++   E  +IGY DSD+AG    RKST GYLF + +
Subjt:  METIPYASIVGNLLYAQTCTRPDISFVVGMLGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLE--MIGYSDSDFAGCVDTRKSTFGYLFLLAE

Query:  -GAISWKSAKQSIIVASTMEAEFVACFEATVHGLWLRNFISGLGIVDSIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKEEVQKQRVSIEYIS
           I W + +Q+ + AS+ EAE++A FEA    LWL+  ++ + I   +  P++IY DN   +  + N    K AKH+++KY   +E+VQ   + +EYI 
Subjt:  -GAISWKSAKQSIIVASTMEAEFVACFEATVHGLWLRNFISGLGIVDSIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKEEVQKQRVSIEYIS

Query:  TKLMIADPLTKGLPPKTFNDHVERKGI
        T+  +AD  TK LP   F +  ++ G+
Subjt:  TKLMIADPLTKGLPPKTFNDHVERKGI

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.2e-122

39.01

Show/hide

Query:  KLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETENVRFIEND---------------------IISGSLEPTTI---------NGQIPHNDIVANEPV
        KLD ++    FIGY ++  GYR + P    +++ + +V F E++                     I S S  PT+           G+ P   I   E +
Subjt:  KLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETENVRFIEND---------------------IISGSLEPTTI---------NGQIPHNDIVANEPV

Query:  TEGPQEIE-----------LRISGRSR---RSAISDDYLIYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSMNDNEVWDLVELPKESKRVG
         EG +E+E           LR S R R   R   S +Y++        +S D +P S  + +      + + AM+EE++S+  N  + LVELPK  + + 
Subjt:  TEGPQEIE-----------LRISGRSR---RSAISDDYLIYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSMNDNEVWDLVELPKESKRVG

Query:  CKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTTFLNGNLD-----------EVKG-EHMVCKL
        CKWVFK K+D +  + RYKARLV KG+ QK GID+ E FSPV K  S+R I++L A  DLE+ Q+DVKT FL+G+L+           EV G +HMVCKL
Subjt:  CKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTTFLNGNLD-----------EVKG-EHMVCKL

Query:  KRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLK-ISGSKFIILVLYVDDILLAINDFGLLCQTKEFLSKNFEIKDMGEASYVIGIEIFRDRTHG
         +S+YGLKQA RQWY+KF+  + S  + +   D C+Y K  S + FIIL+LYVDD+L+   D GL+ + K  LSK+F++KD+G A  ++G++I R+RT  
Subjt:  KRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLK-ISGSKFIILVLYVDDILLAINDFGLLCQTKEFLSKNFEIKDMGEASYVIGIEIFRDRTHG

Query:  LLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERNQMETIPYASIVGNLLYAQTCTRPDISFVVGMLGRYQSNPGMDHWKAVKKVSR
         L LSQ+ YI +VLE+F M        P     K S   CP    E+  M  +PY+S VG+L+YA  CTRPDI+  VG++ R+  NPG +HW+AVK + R
Subjt:  LLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERNQMETIPYASIVGNLLYAQTCTRPDISFVVGMLGRYQSNPGMDHWKAVKKVSR

Query:  YLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEATVHGLWLRNFISGLGIVDSIAKPLR
        YL+GT    L +  SD + + GY+D+D AG +D RKS+ GYLF  + GAISW+S  Q  +  ST EAE++A  E     +WL+ F+  LG+     K   
Subjt:  YLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIVASTMEAEFVACFEATVHGLWLRNFISGLGIVDSIAKPLR

Query:  IYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKEEVQKQRVSIEYISTKLMIADPLTKGLPPKTF
        +YCD+ +A+  SKN  Y    KH++++Y  ++E V  + + +  IST    AD LTK +P   F
Subjt:  IYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKEEVQKQRVSIEYISTKLMIADPLTKGLPPKTF

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.8e-04

58.82

Show/hide

Query:  FAKFLESHGICAQYTMPGTPQQNGVAERRNRTLM
        F ++  SHGI  + T+PGTPQ NGVAER NRT++
Subjt:  FAKFLESHGICAQYTMPGTPQQNGVAERRNRTLM

P25600 Putative transposon Ty5-1 protein YCL074W

4.4e-31

29.52

Show/hide

Query:  MDVKTTFLNGNLDE------------VKGEHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLAINDFGL
        MDV T FLN  +DE             +    V +L   +YGLKQA   W    N+T+   GF  +  +  +Y + +    I + +YVDD+L+A     +
Subjt:  MDVKTTFLNGNLDE------------VKGEHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLAINDFGL

Query:  LCQTKEFLSKNFEIKDMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMD--KCSSSVVPNQKGDKFSLMQCPKNELERNQMETIPYASIVGNLL
          + K+ L+K + +KD+G+    +G+ I +  ++G + LS + YI K   + +++  K + + + N K     L +     L+    +  PY SIVG LL
Subjt:  LCQTKEFLSKNFEIKDMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMD--KCSSSVVPNQKGDKFSLMQCPKNELERNQMETIPYASIVGNLL

Query:  YAQTCTRPDISFVVGMLGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAK-QSIIVA
        +     RPDIS+ V +L R+   P   H ++ ++V RYL  T++  L Y+    L +  Y D+      D   ST GY+ LLA   ++W S K + +I  
Subjt:  YAQTCTRPDISFVVGMLGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAK-QSIIVA

Query:  STMEAEFVACFEATV
         + EAE++   E  +
Subjt:  STMEAEFVACFEATV

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

1.8e-85

35.48

Show/hide

Query:  LSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSMNDNEVWDLVELPKESKR-VGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDS
        L+ +++P +  QA+K +   +W +AM  E+ +   N  WDLV  P      VGC+W+F  K +S+G++ RYKARLVAKGY Q+ G+DY ETFSPV K  S
Subjt:  LSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSMNDNEVWDLVELPKESKR-VGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDS

Query:  LRIIMALVAHYDLELHQMDVKTTFLNGNL-DEV-----------KGEHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFII
        +RI++ +       + Q+DV   FL G L D+V              + VCKL++++YGLKQA R WY++  + + + GF  ++ D  +++   G   + 
Subjt:  LRIIMALVAHYDLELHQMDVKTTFLNGNL-DEV-----------KGEHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFII

Query:  LVLYVDDILLAINDFGLLCQTKEFLSKNFEIKDMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERN
        +++YVDDIL+  ND  LL  T + LS+ F +KD  E  Y +GIE  R  T   L LSQ+ YI  +L +  M        P     K SL    K      
Subjt:  LVLYVDDILLAINDFGLLCQTKEFLSKNFEIKDMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERN

Query:  QMETIPYASIVGNLLYAQTCTRPDISFVVGMLGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEG
          +   Y  IVG+L Y    TRPDIS+ V  L ++   P  +H +A+K++ RYL GT N+ +  K+ + L +  YSD+D+AG  D   ST GY+  L   
Subjt:  QMETIPYASIVGNLLYAQTCTRPDISFVVGMLGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEG

Query:  AISWKSAKQSIIVASTMEAEFVACFEATVHGLWLRNFISGLGIVDSIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKEEVQKQRVSIEYISTK
         ISW S KQ  +V S+ EAE+ +    +    W+ + ++ LGI   + +P  IYCDN  A +   N  +    KH+ + Y  ++ +VQ   + + ++ST 
Subjt:  AISWKSAKQSIIVASTMEAEFVACFEATVHGLWLRNFISGLGIVDSIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKEEVQKQRVSIEYISTK

Query:  LMIADPLTKGLPPKTFNDHVERKGISR
          +AD LTK L    F +   + G++R
Subjt:  LMIADPLTKGLPPKTFNDHVERKGISR

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

4.5e-84

Show/hide

Query:  LSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSMNDNEVWDLVELPKESKR-VGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDS
        L+ +++P +  QA+K D   +W  AM  E+ +   N  WDLV  P  S   VGC+W+F  K +S+G++ RYKARLVAKGY Q+ G+DY ETFSPV K  S
Subjt:  LSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSMNDNEVWDLVELPKESKR-VGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDS

Query:  LRIIMALVAHYDLELHQMDVKTTFLNGNL-DEV-----------KGEHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFII
        +RI++ +       + Q+DV   FL G L DEV                VC+L+++IYGLKQA R WY++    + + GF  +I D  +++   G   I 
Subjt:  LRIIMALVAHYDLELHQMDVKTTFLNGNL-DEV-----------KGEHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFII

Query:  LVLYVDDILLAINDFGLLCQTKEFLSKNFEIKDMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERN
        +++YVDDIL+  ND  LL  T + LS+ F +K+  +  Y +GIE    R    L LSQ+ Y   +L +  M        P     K +L    K      
Subjt:  LVLYVDDILLAINDFGLLCQTKEFLSKNFEIKDMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERN

Query:  QMETIPYASIVGNLLYAQTCTRPDISFVVGMLGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEG
          +   Y  IVG+L Y    TRPD+S+ V  L +Y   P  DHW A+K+V RYL GT ++ +  K+ + L +  YSD+D+AG  D   ST GY+  L   
Subjt:  QMETIPYASIVGNLLYAQTCTRPDISFVVGMLGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEG

Query:  AISWKSAKQSIIVASTMEAEFVACFEATVHGLWLRNFISGLGIVDSIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKEEVQKQRVSIEYISTK
         ISW S KQ  +V S+ EAE+ +    +    W+ + ++ LGI   ++ P  IYCDN  A +   N  +    KH+ L Y  ++ +VQ   + + ++ST 
Subjt:  AISWKSAKQSIIVASTMEAEFVACFEATVHGLWLRNFISGLGIVDSIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKEEVQKQRVSIEYISTK

Query:  LMIADPLTKGLPPKTFNDHVERKGI
          +AD LTK L    F +   + G+
Subjt:  LMIADPLTKGLPPKTFNDHVERKGI

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

7.3e-90

38.33

Show/hide

Query:  WLDAMKEELKSMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKT
        W  AM +E+ +M     W++  LP   K +GCKWV+K K +S+G IERYKARLVAKGYTQ++GID+ ETFSPV K  S+++I+A+ A Y+  LHQ+D+  
Subjt:  WLDAMKEELKSMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKT

Query:  TFLNGNLDEV------------KGEHM----VCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLAINDFGLL
         FLNG+LDE             +G+ +    VC LK+SIYGLKQASRQW+LKF+ T+  FGF ++  D   +LKI+ + F+ +++YVDDI++  N+   +
Subjt:  TFLNGNLDEV------------KGEHM----VCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLAINDFGLL

Query:  CQTKEFLSKNFEIKDMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERNQMETIPYASIVGNLLYAQ
         + K  L   F+++D+G   Y +G+EI R      + + Q+ Y   +L++  +  C  S VP      FS           + ++   Y  ++G L+Y Q
Subjt:  CQTKEFLSKNFEIKDMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKFSLMQCPKNELERNQMETIPYASIVGNLLYAQ

Query:  TCTRPDISFVVGMLGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIVASTME
          TR DISF V  L ++   P + H +AV K+  Y++GT    L Y     +++  +SD+ F  C DTR+ST GY   L    ISWKS KQ ++  S+ E
Subjt:  TCTRPDISFVVGMLGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLLAEGAISWKSAKQSIIVASTME

Query:  AEFVACFEATVHGLWLRNFISGLGIVDSIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKE
        AE+ A   AT   +WL  F   L +   ++KP  ++CDN+AA+  + N  + +  KH+E    +V+E
Subjt:  AEFVACFEATVHGLWLRNFISGLGIVDSIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKE

ATMG00240.1 Gag-Pol-related retrotransposon family protein

2.2e-09

37.97

Show/hide

Query:  TCTRPDISFVVGMLGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLL
        T TRPD++F V  L ++ S       +AV KV  Y++GT    L Y  +  L++  ++DSD+A C DTR+S  G+  L+
Subjt:  TCTRPDISFVVGMLGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLL

ATMG00810.1 DNA/RNA polymerases superfamily protein

4.1e-24

34.51

Show/hide

Query:  LVLYVDDILLAINDFGLLCQTKEFLSKNFEIKDMGEASYVIGIEIFRDRTH-GLLGLSQKAYINKVLEKFKMDKCS--SSVVPNQKGDKFSLMQCPKNEL
        L+LYVDDILL  +   LL      LS  F +KD+G   Y +GI+I   +TH   L LSQ  Y  ++L    M  C   S+ +P +     S  + P    
Subjt:  LVLYVDDILLAINDFGLLCQTKEFLSKNFEIKDMGEASYVIGIEIFRDRTH-GLLGLSQKAYINKVLEKFKMDKCS--SSVVPNQKGDKFSLMQCPKNEL

Query:  ERNQMETIPYASIVGNLLYAQTCTRPDISFVVGMLGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLL
             +   + SIVG L Y  T TRPDIS+ V ++ +    P +  +  +K+V RY++GT  + L   ++  L +  + DSD+AGC  TR+ST G+   L
Subjt:  ERNQMETIPYASIVGNLLYAQTCTRPDISFVVGMLGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLL

Query:  AEGAISWKSAKQSIIVASTMEAEFVA
            ISW + +Q  +  S+ E E+ A
Subjt:  AEGAISWKSAKQSIIVASTMEAEFVA

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)

1.3e-17

44.66

Show/hide

Query:  SIDNDPVSFSQAIKGDNSTKWLDAMKEELKSMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLR
        +I  +P S   A+K      W  AM+EEL +++ N+ W LV  P     +GCKWVFKTK  S+G ++R KARLVAKG+ Q++GI + ET+SPV +  ++R
Subjt:  SIDNDPVSFSQAIKGDNSTKWLDAMKEELKSMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLR

Query:  IIM
         I+
Subjt:  IIM

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTTATACGAATGACTGTAGCAAGCAATATTAAGTCCACAATTAAGAACATTGAAGATGCTAAGGAATTTATGAAATCTTCACTTGCTGCAACACTTATGAGTACTTT
AACCAACATCAAGTTTGATGGTTCTCATACTATACATGAGCATATCCTTGAAATGACGAACTTGGCAGCAAGGTTAAAGACCATGGGAATGAAAGTTAATGAGAATTTTT
TGGTAACGTTTATCCTTAATTCCTTACCTTCAGATTATGGTACATTTCACATGAACTATAACGCTCTGAAAGATAAATGGAATAAACCAATAATTCACTCTGTCAATCTC
ATGGGTCATAAAGGAGCTGGAAAGAAACCTGGAAAAAAGAATGGCAAGGGCAATCATGGACAATTAAAGGTAAAACAATCATCTGCCCCAATCCACAAAAAGAGACAAAT
TAAGGATAAGTGTCGTTTTTGCAACAAACCTGGACACTATCAAAAAGATTGTCTAAAACGTAAGGCATGGTTCGAGAATAAAGGTAAGCATAATGCTTTAGTATGTTTCG
AATCAAATTTAACTGAAGTTCCTTATAATACATGGTGGATTGATTCTGGTTGTACCATTCATATTTCCAATACGATGCAGGGATTCCTCACGACCGAACCACAAACCCAA
ATGAGAGATTCATTTTTATGGGAAACAGAGTCAAATATTATGGAAAATATGACGAGAATGGGACAATGCCCCGGTCCATTCGCTAAATTCCTAGAAAGCCATGGCATATG
TGCTCAATACACAATGCCAGGAACACCACAACAAAATGGTGTTGCAGAAAGGCGAAATCGTACATTAATGAATATGAAACTGGATTCAAGAACAACCAGTGGTTTCTTCA
TTGGTTATCCAGAAAAATCAAAAGGGTATAGATTTTATTGTCCTAACCACAGTACGAGAATAGTTGAAACTGAAAATGTAAGGTTCATTGAGAATGACATAATTAGTGGG
AGTTTGGAACCAACAACAATTAATGGTCAAATACCACATAATGATATTGTAGCAAATGAACCTGTAACTGAGGGACCACAAGAAATAGAATTAAGAATATCTGGAAGATC
AAGAAGATCAGCTATTTCTGATGACTATTTGATTTATTTGCATGAGTCAGAATTTGACTTAAGCATTGATAATGATCCAGTTTCGTTTTCACAAGCCATTAAAGGAGATA
ATTCTACCAAATGGTTAGATGCCATGAAAGAAGAGTTAAAATCTATGAATGATAATGAAGTCTGGGATCTTGTAGAATTGCCTAAAGAAAGTAAAAGAGTTGGGTGTAAA
TGGGTCTTTAAGACCAAACGTGACTCAAATGGCAATATTGAACGATACAAGGCTAGACTTGTTGCCAAAGGTTATACTCAGAAAGATGGCATTGACTACAAAGAGACCTT
TTCTCCTGTCTCGAAAAAGGACTCATTAAGAATTATTATGGCTTTGGTAGCTCATTATGATTTAGAGCTTCATCAAATGGATGTGAAGACCACCTTTCTAAATGGAAATT
TAGATGAAGTGAAAGGAGAACATATGGTGTGTAAATTAAAGAGGTCAATATATGGACTTAAACAAGCTTCCAGACAGTGGTATCTTAAGTTTAATGATACCATCACATCT
TTTGGTTTTAAAGAAAATATCGTTGATCGATGTATATACCTAAAGATCAGTGGGAGTAAGTTTATAATTCTTGTTCTATATGTTGATGACATCTTGCTTGCTATAAATGA
CTTTGGTTTATTATGTCAAACCAAAGAATTTCTTTCTAAAAACTTTGAAATAAAAGATATGGGTGAGGCATCCTATGTGATTGGAATTGAAATATTCCGTGACCGAACAC
ATGGATTGTTAGGATTGTCTCAAAAGGCCTATATTAATAAAGTTCTAGAGAAATTTAAGATGGACAAATGCTCTTCAAGTGTAGTTCCAAATCAAAAGGGAGATAAATTT
AGTCTCATGCAATGTCCAAAAAATGAATTGGAACGAAATCAGATGGAAACTATTCCTTATGCATCTATTGTTGGAAACTTATTGTATGCACAAACTTGCACTAGACCAGA
CATCAGTTTTGTTGTGGGTATGCTAGGCAGGTATCAAAGTAATCCAGGAATGGATCATTGGAAAGCTGTAAAGAAAGTTTCAAGGTATCTGCAAGGAACGAAAAATTATA
TGCTTACTTATAAGAGATCTGATCATCTTGAGATGATTGGATATTCAGATTCAGATTTTGCTGGATGTGTAGATACAAGAAAATCCACTTTTGGCTATTTGTTCCTTTTA
GCTGAAGGAGCAATTTCATGGAAAAGTGCAAAGCAGTCTATTATCGTTGCATCCACTATGGAAGCTGAATTTGTAGCATGCTTTGAGGCTACAGTTCATGGTTTATGGCT
GCGGAACTTTATCTCAGGACTTGGAATTGTCGACAGTATTGCCAAGCCGCTGAGAATTTATTGTGATAATTCTGCAGCAGTTTTCTTCTCAAAAAACGACAAGTATTCTA
AAGGTGCTAAACATATGGAATTAAAATACTTTGCTGTTAAAGAAGAAGTTCAGAAACAGAGGGTGTCAATTGAATACATTAGCACTAAACTTATGATTGCGGATCCACTG
ACTAAAGGATTGCCACCAAAGACGTTCAATGATCACGTTGAACGTAAGGGCATCAGTAGATATCATCATTGA

mRNA sequence

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Protein sequence

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MFIRMTVASNIKSTIKNIEDAKEFMKSSLAATLMSTLTNIKFDGSHTIHEHILEMTNLAARLKTMGMKVNENFLVTFILNSLPSDYGTFHMNYNALKDKWNKPIIHSVNL
MGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKRQIKDKCRFCNKPGHYQKDCLKRKAWFENKGKHNALVCFESNLTEVPYNTWWIDSGCTIHISNTMQGFLTTEPQTQ
MRDSFLWETESNIMENMTRMGQCPGPFAKFLESHGICAQYTMPGTPQQNGVAERRNRTLMNMKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETENVRFIENDIISG
SLEPTTINGQIPHNDIVANEPVTEGPQEIELRISGRSRRSAISDDYLIYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSMNDNEVWDLVELPKESKRVGCK
WVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTTFLNGNLDEVKGEHMVCKLKRSIYGLKQASRQWYLKFNDTITS
FGFKENIVDRCIYLKISGSKFIILVLYVDDILLAINDFGLLCQTKEFLSKNFEIKDMGEASYVIGIEIFRDRTHGLLGLSQKAYINKVLEKFKMDKCSSSVVPNQKGDKF
SLMQCPKNELERNQMETIPYASIVGNLLYAQTCTRPDISFVVGMLGRYQSNPGMDHWKAVKKVSRYLQGTKNYMLTYKRSDHLEMIGYSDSDFAGCVDTRKSTFGYLFLL
AEGAISWKSAKQSIIVASTMEAEFVACFEATVHGLWLRNFISGLGIVDSIAKPLRIYCDNSAAVFFSKNDKYSKGAKHMELKYFAVKEEVQKQRVSIEYISTKLMIADPL
TKGLPPKTFNDHVERKGISRYHH

Pay0007360 (gene) of Melon (Payzawat) v1 genome