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Pay0007532 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0007532
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description50S ribosomal protein L30
Genome locationchr11:11439227..11439644
RNA-Seq ExpressionPay0007532
SyntenyPay0007532
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005996 - Ribosomal protein L30, bacterial-type
IPR016082 - Ribosomal protein L30, ferredoxin-like fold domain
IPR036919 - Ribosomal protein L30, ferredoxin-like fold domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010749.1 rpmD [Cucurbita argyrosperma subsp. argyrosperma]3.8e-4892.59Show/hide
Query:  MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLP
        MNAFKAFKA+VPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMYKARKQK+E+H ALRPPLV+NHLP
Subjt:  MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLP

Query:  APSSASAS
        +PSSASAS
Subjt:  APSSASAS

XP_004151902.1 uncharacterized protein LOC101219925 [Cucumis sativus]4.1e-5098.15Show/hide
Query:  MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLP
        MNAFKAFKASVPIAWS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKME+HRALRPPLVINHLP
Subjt:  MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

XP_008455933.1 PREDICTED: 50S ribosomal protein L30 [Cucumis melo]2.2e-51100Show/hide
Query:  MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLP
        MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLP
Subjt:  MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

XP_022944386.1 uncharacterized protein LOC111448848 [Cucurbita moschata]2.2e-4892.59Show/hide
Query:  MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLP
        MNAFKAFKA+VPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMYKARKQK+E+H ALRPPLV+NHLP
Subjt:  MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLP

Query:  APSSASAS
        +PSSASAS
Subjt:  APSSASAS

XP_023512952.1 uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo]5.9e-4994.44Show/hide
Query:  MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLP
        MNAFKAFKA+VPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMYKARKQK+E+H ALRPPLV+NHLP
Subjt:  MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

TrEMBL top hitse value%identityAlignment
A0A0A0LN29 Ribosomal_L30 domain-containing protein2.0e-5098.15Show/hide
Query:  MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLP
        MNAFKAFKASVPIAWS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKME+HRALRPPLVINHLP
Subjt:  MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

A0A1S3C214 50S ribosomal protein L301.1e-51100Show/hide
Query:  MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLP
        MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLP
Subjt:  MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

A0A5A7VAZ6 50S ribosomal protein L301.1e-51100Show/hide
Query:  MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLP
        MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLP
Subjt:  MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

A0A6J1CI25 uncharacterized protein LOC1110111345.4e-4892.52Show/hide
Query:  MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLP
        MNAFKAFKA+VPIAWSPNLYITLVRGMPGTRRLHRRTLEALRL KCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQK+E+H+ALRPPLV+NHLP
Subjt:  MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLP

Query:  APSSASA
         PSS SA
Subjt:  APSSASA

A0A6J1FUA4 uncharacterized protein LOC1114488481.1e-4892.59Show/hide
Query:  MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLP
        MNAFKAFKA+VPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMYKARKQK+E+H ALRPPLV+NHLP
Subjt:  MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLP

Query:  APSSASAS
        +PSSASAS
Subjt:  APSSASAS

SwissProt top hitse value%identityAlignment
A4QBL5 50S ribosomal protein L301.2e-0448.15Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGMI  V+ L+VVE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

A8ZV75 50S ribosomal protein L301.2e-0445.61Show/hide
Query:  SPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        S ++ +TL + M G    HR+ L A+ L K NRTV   +TPTV+GMI++V  L+ VE
Subjt:  SPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

C3PL27 50S ribosomal protein L309.3e-0542.59Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT V+G+ GT+  HR  +E+L L++   +V++ +TP +RGM+ +V+ LV VE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

Q8FS51 50S ribosomal protein L307.1e-0548.15Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT V+G  GT+  HR  L +L L++   +V+R +TP VRGM+Q V+ L+VVE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

Q8NSX3 50S ribosomal protein L307.1e-0548.15Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGMI  V+ L+VVE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

Arabidopsis top hitse value%identityAlignment
AT5G55140.1 ribosomal protein L30 family protein7.5e-3465.14Show/hide
Query:  MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINH-L
        M+ F+AFKA VPI WS +LYITLVRG+PGTR+LHRRTLEA+ LR+C+RTV+  N  ++RGMI QVKR+VVVETEEMY ARK+    H+ALRPPLV++H  
Subjt:  MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINH-L

Query:  PAPSSASAS
        PA  S++ S
Subjt:  PAPSSASAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGCCTTCAAGGCTTTCAAAGCCAGTGTCCCAATTGCATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATGCCGGGAACAAGGAGACTTCACAGACGTAC
ATTAGAGGCATTGCGGCTCCGAAAATGTAACCGAACTGTCATGCGCTGGAACACGCCTACTGTTAGAGGAATGATTCAACAGGTAAAGCGATTGGTAGTGGTTGAAACAG
AAGAAATGTATAAAGCTCGTAAACAGAAGATGGAAGAGCACAGGGCCCTACGACCGCCTTTAGTTATAAATCACCTTCCGGCACCAAGTTCTGCTTCTGCCTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGCCTTCAAGGCTTTCAAAGCCAGTGTCCCAATTGCATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATGCCGGGAACAAGGAGACTTCACAGACGTAC
ATTAGAGGCATTGCGGCTCCGAAAATGTAACCGAACTGTCATGCGCTGGAACACGCCTACTGTTAGAGGAATGATTCAACAGGTAAAGCGATTGGTAGTGGTTGAAACAG
AAGAAATGTATAAAGCTCGTAAACAGAAGATGGAAGAGCACAGGGCCCTACGACCGCCTTTAGTTATAAATCACCTTCCGGCACCAAGTTCTGCTTCTGCCTCTTGA
Protein sequenceShow/hide protein sequence
MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS