CuGenDBv2

Gene ID	Pay0007592
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Reverse transcriptase
Genome location	chr08:15403009..15405518
RNA-Seq Expression	Pay0007592
Synteny	Pay0007592
Gene Ontology terms	GO:0006259 - DNA metabolic process (biological process) GO:0004518 - nuclease activity (molecular function) GO:0005488 - binding (molecular function) GO:0008233 - peptidase activity (molecular function) GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0041108.1 reverse transcriptase [Cucumis melo var. makuwa]

1.1e-73

67.23

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Query:  GVMPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYEIERLKKLGATVFEGSTDPADAENWLNMLEKCFD
        GVMPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAY IERLKKLGATVFEGSTDPADAENWLNMLEKCFD
Subjt:  GVMPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYEIERLKKLGATVFEGSTDPADAENWLNMLEKCFD

Query:  VMNCPEERKVRLATFLLQKEAEGW----------------------------------------------------------------------------
        VMNCPEERKVRLATFLLQKEAEGW                                                                            
Subjt:  VMNCPEERKVRLATFLLQKEAEGW----------------------------------------------------------------------------

Query:  -FERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIT
         FERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIT
Subjt:  -FERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIT

KAA0041109.1 hypothetical protein E6C27_scaffold128G00120 [Cucumis melo var. makuwa]

3.6e-74

75.98

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Query:  MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYEIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVM
        MPPRTGRRRRQNQDGMQGPTQGPSVG+SSTL VRGGAGNEQFARTTQEIGR DRAEPSDPEKAY IERLKKLGATVFEGSTDPADAENWLNMLEKCFDVM
Subjt:  MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYEIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVM

Query:  NCPEERKVRLATFLLQKEAEGW---------------------------------------------FERGLRFEIRTPVTAIAKWTNFSQLVETALRVE
        NCPEERKVRLATFLLQKEAEGW                                             FERGLRFEIRTPVTAIAKWTNFSQLVETALRVE
Subjt:  NCPEERKVRLATFLLQKEAEGW---------------------------------------------FERGLRFEIRTPVTAIAKWTNFSQLVETALRVE

Query:  QSIT
        QSIT
Subjt:  QSIT

KAA0042456.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

1.2e-74

76.47

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Query:  MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYEIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVM
        MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVR GAGNEQFARTTQEIGR DRAEPSDPEKAY IERLKKLGATVFEGSTDPADAENWLNMLEKCFDVM
Subjt:  MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYEIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVM

Query:  NCPEERKVRLATFLLQKEAEGW---------------------------------------------FERGLRFEIRTPVTAIAKWTNFSQLVETALRVE
        NCPEERKVRLATFLLQKEAEGW                                             FERGLRFEIRTPVTAIAKWTNFSQLVETALRVE
Subjt:  NCPEERKVRLATFLLQKEAEGW---------------------------------------------FERGLRFEIRTPVTAIAKWTNFSQLVETALRVE

Query:  QSIT
        QSIT
Subjt:  QSIT

KAA0056684.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

8.1e-74

66.95

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Query:  SGVMPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYEIERLKKLGATVFEGSTDPADAENWLNMLEKCF
        +GVMPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAY IERLKKLGATVFEGSTDPADAENWLNMLEKCF
Subjt:  SGVMPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYEIERLKKLGATVFEGSTDPADAENWLNMLEKCF

Query:  DVMNCPEERKVRLATFLLQKEAEGW---------------------------------------------------------------------------
        DVMNCPEERKVRLATFLLQKEAEGW                                                                           
Subjt:  DVMNCPEERKVRLATFLLQKEAEGW---------------------------------------------------------------------------

Query:  --FERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIT
          FERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIT
Subjt:  --FERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIT

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

5.2e-73

67.09

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Query:  VMPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYEIERLKKLGATVFEGSTDPADAENWLNMLEKCFDV
        VMPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAY IERLKKLGATVFEGSTDPADAENWLNMLEKCFDV
Subjt:  VMPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYEIERLKKLGATVFEGSTDPADAENWLNMLEKCFDV

Query:  MNCPEERKVRLATFLLQKEAEGW-----------------------------------------------------------------------------
        MNCPEERKVRLATFLLQKEAEGW                                                                             
Subjt:  MNCPEERKVRLATFLLQKEAEGW-----------------------------------------------------------------------------

Query:  FERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIT
        FERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIT
Subjt:  FERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TDR2 Reverse transcriptase

5.1e-74

67.23

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Query:  GVMPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYEIERLKKLGATVFEGSTDPADAENWLNMLEKCFD
        GVMPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAY IERLKKLGATVFEGSTDPADAENWLNMLEKCFD
Subjt:  GVMPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYEIERLKKLGATVFEGSTDPADAENWLNMLEKCFD

Query:  VMNCPEERKVRLATFLLQKEAEGW----------------------------------------------------------------------------
        VMNCPEERKVRLATFLLQKEAEGW                                                                            
Subjt:  VMNCPEERKVRLATFLLQKEAEGW----------------------------------------------------------------------------

Query:  -FERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIT
         FERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIT
Subjt:  -FERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIT

A0A5A7TIG0 Reverse transcriptase

1.8e-74

75.98

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Query:  MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYEIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVM
        MPPRTGRRRRQNQDGMQGPTQGPSVG+SSTL VRGGAGNEQFARTTQEIGR DRAEPSDPEKAY IERLKKLGATVFEGSTDPADAENWLNMLEKCFDVM
Subjt:  MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYEIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVM

Query:  NCPEERKVRLATFLLQKEAEGW---------------------------------------------FERGLRFEIRTPVTAIAKWTNFSQLVETALRVE
        NCPEERKVRLATFLLQKEAEGW                                             FERGLRFEIRTPVTAIAKWTNFSQLVETALRVE
Subjt:  NCPEERKVRLATFLLQKEAEGW---------------------------------------------FERGLRFEIRTPVTAIAKWTNFSQLVETALRVE

Query:  QSIT
        QSIT
Subjt:  QSIT

A0A5A7TKI0 DNA/RNA polymerases superfamily protein

6.0e-75

76.47

Show/hide

Query:  MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYEIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVM
        MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVR GAGNEQFARTTQEIGR DRAEPSDPEKAY IERLKKLGATVFEGSTDPADAENWLNMLEKCFDVM
Subjt:  MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYEIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVM

Query:  NCPEERKVRLATFLLQKEAEGW---------------------------------------------FERGLRFEIRTPVTAIAKWTNFSQLVETALRVE
        NCPEERKVRLATFLLQKEAEGW                                             FERGLRFEIRTPVTAIAKWTNFSQLVETALRVE
Subjt:  NCPEERKVRLATFLLQKEAEGW---------------------------------------------FERGLRFEIRTPVTAIAKWTNFSQLVETALRVE

Query:  QSIT
        QSIT
Subjt:  QSIT

A0A5A7UNA3 Reverse transcriptase

3.9e-74

66.95

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Query:  SGVMPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYEIERLKKLGATVFEGSTDPADAENWLNMLEKCF
        +GVMPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAY IERLKKLGATVFEGSTDPADAENWLNMLEKCF
Subjt:  SGVMPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYEIERLKKLGATVFEGSTDPADAENWLNMLEKCF

Query:  DVMNCPEERKVRLATFLLQKEAEGW---------------------------------------------------------------------------
        DVMNCPEERKVRLATFLLQKEAEGW                                                                           
Subjt:  DVMNCPEERKVRLATFLLQKEAEGW---------------------------------------------------------------------------

Query:  --FERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIT
          FERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIT
Subjt:  --FERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIT

A0A5D3BS67 Reverse transcriptase

2.5e-73

67.09

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Query:  VMPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYEIERLKKLGATVFEGSTDPADAENWLNMLEKCFDV
        VMPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAY IERLKKLGATVFEGSTDPADAENWLNMLEKCFDV
Subjt:  VMPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYEIERLKKLGATVFEGSTDPADAENWLNMLEKCFDV

Query:  MNCPEERKVRLATFLLQKEAEGW-----------------------------------------------------------------------------
        MNCPEERKVRLATFLLQKEAEGW                                                                             
Subjt:  MNCPEERKVRLATFLLQKEAEGW-----------------------------------------------------------------------------

Query:  FERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIT
        FERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIT
Subjt:  FERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCTTCAGGAGTCATGCCACCACGTACTGGTAGACGACGCCGGCAGAATCAGGACGGGATGCAAGGTCCTACCCAAGGTCCATCTGTAGGGGAATCTAGTACCCTAGG
AGTTCGAGGTGGTGCAGGAAACGAGCAGTTTGCGAGAACAACACAGGAAATAGGAAGGACAGATAGAGCAGAGCCTAGTGATCCAGAAAAGGCATACGAAATTGAACGGC
TGAAGAAGTTAGGGGCTACAGTGTTTGAAGGTTCCACAGATCCAGCTGATGCAGAGAACTGGTTGAATATGCTTGAAAAGTGTTTTGATGTGATGAATTGTCCTGAGGAG
CGAAAGGTTAGATTGGCCACATTTTTGTTGCAAAAAGAGGCGGAAGGATGGTTTGAAAGAGGGTTGCGTTTTGAAATACGTACCCCAGTTACAGCCATTGCTAAGTGGAC
GAATTTCTCTCAGTTAGTGGAGACTGCCCTTCGTGTGGAGCAGAGTATAACATAA

mRNA sequence

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Protein sequence

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MSSGVMPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDPEKAYEIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEE
RKVRLATFLLQKEAEGWFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSIT

Pay0007592 (gene) of Melon (Payzawat) v1 genome