CuGenDBv2

Gene ID	Pay0007639
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Reverse transcriptase
Genome location	chr02:15817119..15819012
RNA-Seq Expression	Pay0007639
Synteny	Pay0007639
Gene Ontology terms	GO:0090304 - nucleic acid metabolic process (biological process) GO:0005488 - binding (molecular function) GO:0016740 - transferase activity (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR041588 - Integrase zinc-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

6.3e-77

65.61

Show/hide

Query:  MYRTLKKTYWWSGMKREIVEYVDRCLICQQVKP----------------WKWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAK
        MYRTLKKTYWW GMKR+I EYVDRCLICQQVKP                WKW+HITMDFLF LP TSR YDGIWVI DRLTKTARFIPIKA  TLDQLAK
Subjt:  MYRTLKKTYWWSGMKREIVEYVDRCLICQQVKP----------------WKWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAK

Query:  LYVDRITMQD----SCVLERSGRT----------KASGPELVQVTSENIKLIRENLKIAQDRQKSYAGNRRRDLEFQIGEQVFLKLSPWRGVLRFERKDP
        LYVDRI  Q     S V +R  RT          K   PELVQVTS+NIKLI+ENLKIAQDRQKSY   RRRDLEFQIGEQVFLKLS WRGVLRFERK+ 
Subjt:  LYVDRITMQD----SCVLERSGRT----------KASGPELVQVTSENIKLIRENLKIAQDRQKSYAGNRRRDLEFQIGEQVFLKLSPWRGVLRFERKDP

Query:  LQVLQVQPIELKEDFSYREEASTGISSKPEGFLVFSDALSILEVHKSNQKLYL
                                ISSKP GF+VF D LSILEVHKSNQKLYL
Subjt:  LQVLQVQPIELKEDFSYREEASTGISSKPEGFLVFSDALSILEVHKSNQKLYL

KAA0054352.1 reverse transcriptase [Cucumis melo var. makuwa]

7.7e-67

49.54

Show/hide

Query:  MYRTLKKTYWWSGMKREIVEYVDRCLICQQVKP----------------WKWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAK
        MYRTLKKTYWW GMKREI EYVDRCLICQ VKP                WKWEHIT+DFLF LPCTSR YDGIWVIVDRLTK ARFIPIKAT TLDQLAK
Subjt:  MYRTLKKTYWWSGMKREIVEYVDRCLICQQVKP----------------WKWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAK

Query:  LYVDRI-------------------------------------------------------------------------TMQDSCVLERSGRTKASGPEL
        LYVDRI                                                                         T QDS      G  K  GPEL
Subjt:  LYVDRI-------------------------------------------------------------------------TMQDSCVLERSGRTKASGPEL

Query:  VQVTSENIKLIRENLKIAQDRQKSYAGNRRRDLEFQIGEQVFLKLSPWRGVLRFERK-------------------------------------------
        +QVT +NIKLIRENLKIAQDRQKSYA  RRRDLEFQIGEQVFLKLSPWRGVLRF RK                                           
Subjt:  VQVTSENIKLIRENLKIAQDRQKSYAGNRRRDLEFQIGEQVFLKLSPWRGVLRFERK-------------------------------------------

Query:  ----DPLQVLQVQPIELKEDFSYREEA
            DP  VLQVQP ELKED SYREEA
Subjt:  ----DPLQVLQVQPIELKEDFSYREEA

TYK14495.1 putative polyprotein [Cucumis melo var. makuwa]

8.1e-101

82.72

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Query:  MYRTLKKTYWWSGMKREIVEYVDRCLICQQVKPWKWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAKLYVDRITMQDSCVLER
        +YRTLKKTYWWSGMKREIVEYVDRCLICQQVKP            RLP TSRRYDGIWVIVDRLTKT +FIPIK T TLDQLAKLYVDRI   DSCVLER
Subjt:  MYRTLKKTYWWSGMKREIVEYVDRCLICQQVKPWKWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAKLYVDRITMQDSCVLER

Query:  SGRTKASGPELVQVTSENIKLIRENLKIAQDRQKSYAGNRRRDLEFQIGEQVFLKLSPWRGVLRFERKDPLQVLQVQPIELKEDFSYREEA---------
        SGRTKASGPELVQVTSENIKLIRENLKIAQDRQKSYAGNRRRDLEFQIGEQVFLKLSPWRGVLRFERKDPLQVLQVQPIELKEDFSYREEA         
Subjt:  SGRTKASGPELVQVTSENIKLIRENLKIAQDRQKSYAGNRRRDLEFQIGEQVFLKLSPWRGVLRFERKDPLQVLQVQPIELKEDFSYREEA---------

Query:  -----------STGISSKPEGFLVFSDALSILEVHKSNQKLYL
                   STGISSKP+GFLVFSDALSILEVHKSNQKLYL
Subjt:  -----------STGISSKPEGFLVFSDALSILEVHKSNQKLYL

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

6.3e-77

65.61

Show/hide

Query:  MYRTLKKTYWWSGMKREIVEYVDRCLICQQVKP----------------WKWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAK
        MYRTLKKTYWW GMKR+I EYVDRCLICQQVKP                WKW+HITMDFLF LP TSR YDGIWVI DRLTKTARFIPIKA  TLDQLAK
Subjt:  MYRTLKKTYWWSGMKREIVEYVDRCLICQQVKP----------------WKWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAK

Query:  LYVDRITMQD----SCVLERSGRT----------KASGPELVQVTSENIKLIRENLKIAQDRQKSYAGNRRRDLEFQIGEQVFLKLSPWRGVLRFERKDP
        LYVDRI  Q     S V +R  RT          K   PELVQVTS+NIKLI+ENLKIAQDRQKSY   RRRDLEFQIGEQVFLKLS WRGVLRFERK+ 
Subjt:  LYVDRITMQD----SCVLERSGRT----------KASGPELVQVTSENIKLIRENLKIAQDRQKSYAGNRRRDLEFQIGEQVFLKLSPWRGVLRFERKDP

Query:  LQVLQVQPIELKEDFSYREEASTGISSKPEGFLVFSDALSILEVHKSNQKLYL
                                ISSKP GF+VF D LSILEVHKSNQKLYL
Subjt:  LQVLQVQPIELKEDFSYREEASTGISSKPEGFLVFSDALSILEVHKSNQKLYL

XP_008459128.1 PREDICTED: uncharacterized protein LOC103498328 [Cucumis melo]

1.2e-96

76.61

Show/hide

Query:  MYRTLKKTYWWSGMKREIVEYVDRCLICQQVKP----------------WKWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAK
        MYRTLKKTYWW GMKREI EYVDRCLICQ VKP                WKWEHIT+DFLF LPCTSR YDGIWVIVDRLTK ARFIPIKAT TLDQLAK
Subjt:  MYRTLKKTYWWSGMKREIVEYVDRCLICQQVKP----------------WKWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAK

Query:  LYVDRITMQDSCVLERSGRTKASGPELVQVTSENIKLIRENLKIAQDRQKSYAGNRRRDLEFQIGEQVFLKLSPWRGVLRFERKDPLQVLQVQPIELKED
        LYVDRIT QDS      G  K  GPEL+QVT +NIKLIRENLKIAQDRQKSYA  RRRDLEFQIGEQVFLKLSPWRGVLRF RKDP  VLQVQP ELKED
Subjt:  LYVDRITMQDSCVLERSGRTKASGPELVQVTSENIKLIRENLKIAQDRQKSYAGNRRRDLEFQIGEQVFLKLSPWRGVLRFERKDPLQVLQVQPIELKED

Query:  FSYREEA---------STGISSKPEGFLVFSDALSILEVHKSNQKLYL
         SYREEA         STG SSKP GFLVFS+ALSILEV KSNQKLYL
Subjt:  FSYREEA---------STGISSKPEGFLVFSDALSILEVHKSNQKLYL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CAP1 uncharacterized protein LOC103498328

5.9e-97

76.61

Show/hide

Query:  MYRTLKKTYWWSGMKREIVEYVDRCLICQQVKP----------------WKWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAK
        MYRTLKKTYWW GMKREI EYVDRCLICQ VKP                WKWEHIT+DFLF LPCTSR YDGIWVIVDRLTK ARFIPIKAT TLDQLAK
Subjt:  MYRTLKKTYWWSGMKREIVEYVDRCLICQQVKP----------------WKWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAK

Query:  LYVDRITMQDSCVLERSGRTKASGPELVQVTSENIKLIRENLKIAQDRQKSYAGNRRRDLEFQIGEQVFLKLSPWRGVLRFERKDPLQVLQVQPIELKED
        LYVDRIT QDS      G  K  GPEL+QVT +NIKLIRENLKIAQDRQKSYA  RRRDLEFQIGEQVFLKLSPWRGVLRF RKDP  VLQVQP ELKED
Subjt:  LYVDRITMQDSCVLERSGRTKASGPELVQVTSENIKLIRENLKIAQDRQKSYAGNRRRDLEFQIGEQVFLKLSPWRGVLRFERKDPLQVLQVQPIELKED

Query:  FSYREEA---------STGISSKPEGFLVFSDALSILEVHKSNQKLYL
         SYREEA         STG SSKP GFLVFS+ALSILEV KSNQKLYL
Subjt:  FSYREEA---------STGISSKPEGFLVFSDALSILEVHKSNQKLYL

A0A5A7TKT0 Reverse transcriptase

3.0e-77

65.61

Show/hide

Query:  MYRTLKKTYWWSGMKREIVEYVDRCLICQQVKP----------------WKWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAK
        MYRTLKKTYWW GMKR+I EYVDRCLICQQVKP                WKW+HITMDFLF LP TSR YDGIWVI DRLTKTARFIPIKA  TLDQLAK
Subjt:  MYRTLKKTYWWSGMKREIVEYVDRCLICQQVKP----------------WKWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAK

Query:  LYVDRITMQD----SCVLERSGRT----------KASGPELVQVTSENIKLIRENLKIAQDRQKSYAGNRRRDLEFQIGEQVFLKLSPWRGVLRFERKDP
        LYVDRI  Q     S V +R  RT          K   PELVQVTS+NIKLI+ENLKIAQDRQKSY   RRRDLEFQIGEQVFLKLS WRGVLRFERK+ 
Subjt:  LYVDRITMQD----SCVLERSGRT----------KASGPELVQVTSENIKLIRENLKIAQDRQKSYAGNRRRDLEFQIGEQVFLKLSPWRGVLRFERKDP

Query:  LQVLQVQPIELKEDFSYREEASTGISSKPEGFLVFSDALSILEVHKSNQKLYL
                                ISSKP GF+VF D LSILEVHKSNQKLYL
Subjt:  LQVLQVQPIELKEDFSYREEASTGISSKPEGFLVFSDALSILEVHKSNQKLYL

A0A5A7UF07 Reverse transcriptase

3.7e-67

49.54

Show/hide

Query:  MYRTLKKTYWWSGMKREIVEYVDRCLICQQVKP----------------WKWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAK
        MYRTLKKTYWW GMKREI EYVDRCLICQ VKP                WKWEHIT+DFLF LPCTSR YDGIWVIVDRLTK ARFIPIKAT TLDQLAK
Subjt:  MYRTLKKTYWWSGMKREIVEYVDRCLICQQVKP----------------WKWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAK

Query:  LYVDRI-------------------------------------------------------------------------TMQDSCVLERSGRTKASGPEL
        LYVDRI                                                                         T QDS      G  K  GPEL
Subjt:  LYVDRI-------------------------------------------------------------------------TMQDSCVLERSGRTKASGPEL

Query:  VQVTSENIKLIRENLKIAQDRQKSYAGNRRRDLEFQIGEQVFLKLSPWRGVLRFERK-------------------------------------------
        +QVT +NIKLIRENLKIAQDRQKSYA  RRRDLEFQIGEQVFLKLSPWRGVLRF RK                                           
Subjt:  VQVTSENIKLIRENLKIAQDRQKSYAGNRRRDLEFQIGEQVFLKLSPWRGVLRFERK-------------------------------------------

Query:  ----DPLQVLQVQPIELKEDFSYREEA
            DP  VLQVQP ELKED SYREEA
Subjt:  ----DPLQVLQVQPIELKEDFSYREEA

A0A5D3CSJ5 Putative polyprotein

3.9e-101

82.72

Show/hide

Query:  MYRTLKKTYWWSGMKREIVEYVDRCLICQQVKPWKWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAKLYVDRITMQDSCVLER
        +YRTLKKTYWWSGMKREIVEYVDRCLICQQVKP            RLP TSRRYDGIWVIVDRLTKT +FIPIK T TLDQLAKLYVDRI   DSCVLER
Subjt:  MYRTLKKTYWWSGMKREIVEYVDRCLICQQVKPWKWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAKLYVDRITMQDSCVLER

Query:  SGRTKASGPELVQVTSENIKLIRENLKIAQDRQKSYAGNRRRDLEFQIGEQVFLKLSPWRGVLRFERKDPLQVLQVQPIELKEDFSYREEA---------
        SGRTKASGPELVQVTSENIKLIRENLKIAQDRQKSYAGNRRRDLEFQIGEQVFLKLSPWRGVLRFERKDPLQVLQVQPIELKEDFSYREEA         
Subjt:  SGRTKASGPELVQVTSENIKLIRENLKIAQDRQKSYAGNRRRDLEFQIGEQVFLKLSPWRGVLRFERKDPLQVLQVQPIELKEDFSYREEA---------

Query:  -----------STGISSKPEGFLVFSDALSILEVHKSNQKLYL
                   STGISSKP+GFLVFSDALSILEVHKSNQKLYL
Subjt:  -----------STGISSKPEGFLVFSDALSILEVHKSNQKLYL

A0A5D3D150 Reverse transcriptase

3.0e-77

65.61

Show/hide

Query:  MYRTLKKTYWWSGMKREIVEYVDRCLICQQVKP----------------WKWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAK
        MYRTLKKTYWW GMKR+I EYVDRCLICQQVKP                WKW+HITMDFLF LP TSR YDGIWVI DRLTKTARFIPIKA  TLDQLAK
Subjt:  MYRTLKKTYWWSGMKREIVEYVDRCLICQQVKP----------------WKWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAK

Query:  LYVDRITMQD----SCVLERSGRT----------KASGPELVQVTSENIKLIRENLKIAQDRQKSYAGNRRRDLEFQIGEQVFLKLSPWRGVLRFERKDP
        LYVDRI  Q     S V +R  RT          K   PELVQVTS+NIKLI+ENLKIAQDRQKSY   RRRDLEFQIGEQVFLKLS WRGVLRFERK+ 
Subjt:  LYVDRITMQD----SCVLERSGRT----------KASGPELVQVTSENIKLIRENLKIAQDRQKSYAGNRRRDLEFQIGEQVFLKLSPWRGVLRFERKDP

Query:  LQVLQVQPIELKEDFSYREEASTGISSKPEGFLVFSDALSILEVHKSNQKLYL
                                ISSKP GF+VF D LSILEVHKSNQKLYL
Subjt:  LQVLQVQPIELKEDFSYREEASTGISSKPEGFLVFSDALSILEVHKSNQKLYL

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

4.9e-08

Show/hide

Query:  KTYWWSGMKREIVEYVDRCLICQ-----QVKPW-----------KWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAKLYVDRI
        + + W G++++I EYV  C  CQ       KP+            WE ++MDF+  LP  S  Y+ ++V+VDR +K A  +P   + T +Q A+++  R+
Subjt:  KTYWWSGMKREIVEYVDRCLICQ-----QVKPW-----------KWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAKLYVDRI

P0CT35 Transposon Tf2-2 polyprotein

4.9e-08

Show/hide

Query:  KTYWWSGMKREIVEYVDRCLICQ-----QVKPW-----------KWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAKLYVDRI
        + + W G++++I EYV  C  CQ       KP+            WE ++MDF+  LP  S  Y+ ++V+VDR +K A  +P   + T +Q A+++  R+
Subjt:  KTYWWSGMKREIVEYVDRCLICQ-----QVKPW-----------KWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAKLYVDRI

P0CT36 Transposon Tf2-3 polyprotein

4.9e-08

Show/hide

Query:  KTYWWSGMKREIVEYVDRCLICQ-----QVKPW-----------KWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAKLYVDRI
        + + W G++++I EYV  C  CQ       KP+            WE ++MDF+  LP  S  Y+ ++V+VDR +K A  +P   + T +Q A+++  R+
Subjt:  KTYWWSGMKREIVEYVDRCLICQ-----QVKPW-----------KWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAKLYVDRI

P0CT41 Transposon Tf2-12 polyprotein

4.9e-08

Show/hide

Query:  KTYWWSGMKREIVEYVDRCLICQ-----QVKPW-----------KWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAKLYVDRI
        + + W G++++I EYV  C  CQ       KP+            WE ++MDF+  LP  S  Y+ ++V+VDR +K A  +P   + T +Q A+++  R+
Subjt:  KTYWWSGMKREIVEYVDRCLICQ-----QVKPW-----------KWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAKLYVDRI

Q9UR07 Transposon Tf2-11 polyprotein

4.9e-08

Show/hide

Query:  KTYWWSGMKREIVEYVDRCLICQ-----QVKPW-----------KWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAKLYVDRI
        + + W G++++I EYV  C  CQ       KP+            WE ++MDF+  LP  S  Y+ ++V+VDR +K A  +P   + T +Q A+++  R+
Subjt:  KTYWWSGMKREIVEYVDRCLICQ-----QVKPW-----------KWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAKLYVDRI

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTATAGAACTCTGAAGAAGACTTATTGGTGGTCTGGTATGAAGCGAGAGATAGTTGAATATGTCGATAGATGTTTGATCTGTCAACAGGTTAAACCATGGAAGTGGGA
GCATATTACCATGGATTTTCTGTTTAGATTACCCTGTACATCTAGAAGATATGATGGTATATGGGTAATAGTAGATAGACTCACCAAGACAGCGCGGTTTATACCGATTA
AAGCGACGCCTACACTAGATCAGCTAGCTAAGTTATACGTCGACAGGATTACCATGCAGGACTCCTGTGTGCTGGAACGAAGTGGGAGAACGAAAGCTAGTGGTCCTGAG
TTAGTACAAGTTACGTCAGAAAATATTAAGTTGATTAGGGAAAATCTAAAAATAGCTCAGGATCGACAGAAGAGCTATGCAGGTAACCGACGAAGAGACTTAGAGTTCCA
GATTGGAGAACAAGTTTTCTTAAAGTTATCTCCGTGGAGGGGTGTTCTTCGTTTTGAGAGGAAAGATCCATTACAAGTGTTGCAAGTACAACCAATTGAACTAAAAGAAG
ACTTCAGTTATAGAGAGGAAGCAAGCACAGGAATTTCGAGCAAACCAGAAGGATTTCTGGTGTTCTCTGATGCTTTGAGTATTCTGGAAGTGCATAAGTCGAATCAGAAG
CTCTATTTGTGGGGTTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MYRTLKKTYWWSGMKREIVEYVDRCLICQQVKPWKWEHITMDFLFRLPCTSRRYDGIWVIVDRLTKTARFIPIKATPTLDQLAKLYVDRITMQDSCVLERSGRTKASGPE
LVQVTSENIKLIRENLKIAQDRQKSYAGNRRRDLEFQIGEQVFLKLSPWRGVLRFERKDPLQVLQVQPIELKEDFSYREEASTGISSKPEGFLVFSDALSILEVHKSNQK
LYLWG

Pay0007639 (gene) of Melon (Payzawat) v1 genome