CuGenDBv2

Gene ID	Pay0007690
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Gag protease polyprotein
Genome location	chr03:11819981..11820574
RNA-Seq Expression	Pay0007690
Synteny	Pay0007690
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	IPR005162 - Retrotransposon gag domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0033047.1 gag protease polyprotein [Cucumis melo var. makuwa]

2.9e-102

100

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Query:  MREQQKPASPTPASAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT
        MREQQKPASPTPASAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT
Subjt:  MREQQKPASPTPASAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT

Query:  DRGTAWWETTERMLGGDMSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLQLDIQ
        DRGTAWWETTERMLGGDMSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLQLDIQ
Subjt:  DRGTAWWETTERMLGGDMSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLQLDIQ

KAA0038231.1 gag protease polyprotein [Cucumis melo var. makuwa]

6.4e-102

97.46

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Query:  MREQQKPASPTPASAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT
        MREQQKPASPTPA APAPAPAP+PAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT
Subjt:  MREQQKPASPTPASAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT

Query:  DRGTAWWETTERMLGGDMSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLQLDIQGLV
        DRGTAWWETTERMLGGD+SQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFV+GL+LDIQGLV
Subjt:  DRGTAWWETTERMLGGDMSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLQLDIQGLV

KAA0043391.1 pol protein [Cucumis melo var. makuwa]

8.4e-102

97.46

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Query:  MREQQKPASPTPASAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT
        MREQQKPASPTPASAPAPAPAP PAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT
Subjt:  MREQQKPASPTPASAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT

Query:  DRGTAWWETTERMLGGDMSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLQLDIQGLV
        DRGTAWWETTERMLGGD+SQITWQQFKESFYAKFFSASLRDAKRQEFLN+EQG+MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGL+LDIQGLV
Subjt:  DRGTAWWETTERMLGGDMSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLQLDIQGLV

KAA0058399.1 pol protein [Cucumis melo var. makuwa]

2.9e-102

97.97

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Query:  MREQQKPASPTPASAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT
        MREQQKPASPTPA APAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQK+QCAVFMLT
Subjt:  MREQQKPASPTPASAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT

Query:  DRGTAWWETTERMLGGDMSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLQLDIQGLV
        DRGTAWWETTERMLGGD+SQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGL+LDIQGLV
Subjt:  DRGTAWWETTERMLGGDMSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLQLDIQGLV

TYK01613.1 pol protein [Cucumis melo var. makuwa]

2.2e-102

98.48

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Query:  MREQQKPASPTPASAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT
        MREQQKPASPTPA APAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT
Subjt:  MREQQKPASPTPASAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT

Query:  DRGTAWWETTERMLGGDMSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLQLDIQGLV
        DRGTAWWETTERMLGGD+SQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGL+LDIQGLV
Subjt:  DRGTAWWETTERMLGGDMSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLQLDIQGLV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SUP6 Gag protease polyprotein

1.4e-102

100

Show/hide

Query:  MREQQKPASPTPASAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT
        MREQQKPASPTPASAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT
Subjt:  MREQQKPASPTPASAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT

Query:  DRGTAWWETTERMLGGDMSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLQLDIQ
        DRGTAWWETTERMLGGDMSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLQLDIQ
Subjt:  DRGTAWWETTERMLGGDMSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLQLDIQ

A0A5A7T9B7 Gag protease polyprotein

3.1e-102

97.46

Show/hide

Query:  MREQQKPASPTPASAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT
        MREQQKPASPTPA APAPAPAP+PAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT
Subjt:  MREQQKPASPTPASAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT

Query:  DRGTAWWETTERMLGGDMSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLQLDIQGLV
        DRGTAWWETTERMLGGD+SQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFV+GL+LDIQGLV
Subjt:  DRGTAWWETTERMLGGDMSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLQLDIQGLV

A0A5A7TP96 Reverse transcriptase

4.1e-102

97.46

Show/hide

Query:  MREQQKPASPTPASAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT
        MREQQKPASPTPASAPAPAPAP PAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT
Subjt:  MREQQKPASPTPASAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT

Query:  DRGTAWWETTERMLGGDMSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLQLDIQGLV
        DRGTAWWETTERMLGGD+SQITWQQFKESFYAKFFSASLRDAKRQEFLN+EQG+MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGL+LDIQGLV
Subjt:  DRGTAWWETTERMLGGDMSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLQLDIQGLV

A0A5A7UY04 Reverse transcriptase

1.4e-102

97.97

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Query:  MREQQKPASPTPASAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT
        MREQQKPASPTPA APAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQK+QCAVFMLT
Subjt:  MREQQKPASPTPASAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT

Query:  DRGTAWWETTERMLGGDMSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLQLDIQGLV
        DRGTAWWETTERMLGGD+SQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGL+LDIQGLV
Subjt:  DRGTAWWETTERMLGGDMSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLQLDIQGLV

A0A5D3BPI1 Reverse transcriptase

1.1e-102

98.48

Show/hide

Query:  MREQQKPASPTPASAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT
        MREQQKPASPTPA APAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT
Subjt:  MREQQKPASPTPASAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLT

Query:  DRGTAWWETTERMLGGDMSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLQLDIQGLV
        DRGTAWWETTERMLGGD+SQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGL+LDIQGLV
Subjt:  DRGTAWWETTERMLGGDMSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLQLDIQGLV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCGGGAGCAGCAGAAGCCTGCCTCGCCAACTCCGGCGTCAGCTCCAGCGCCAGCTCCAGCACCAGTTCCTGCTCCAGCTCCGGCTCCGGTACCAGTTGCGCCCCAGTT
TGTGCCGGATCAGTTGTCAGCAGAGGCTAAGCATTTGAGGGATTTCAGGAAGTATAATCCCACGACGTTCGATGGGTCTTTGGAGGACCCCACCAGGGCTCAGATGTGGT
TATCGTCCTTGGAAACCATATTCCGTTACATGAAATGCCCTGAGGATCAGAAGGTTCAGTGTGCTGTTTTTATGTTGACTGACAGAGGTACTGCATGGTGGGAGACTACA
GAGAGGATGCTAGGTGGTGATATGAGTCAGATCACGTGGCAGCAGTTCAAGGAGAGTTTCTATGCGAAATTCTTCTCTGCCAGTTTGAGAGATGCCAAGCGGCAGGAGTT
TCTGAACTTAGAGCAGGGTGACATGACAGTGGAGCAGTATGATGCAGAGTTTGACATGTTATCCCGCTTCGCTCCCGAGATGATAGCGACCGAGGCGGCCAGAGCTGATA
AGTTTGTTAGAGGCCTCCAACTGGACATTCAGGGTTTGGTCTGA

mRNA sequence

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Protein sequence

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MREQQKPASPTPASAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAWWETT
ERMLGGDMSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLQLDIQGLV

Pay0007690 (gene) of Melon (Payzawat) v1 genome