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Pay0008041 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0008041
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionSplicing factor subunit
Genome locationchr08:1840642..1842736
RNA-Seq ExpressionPay0008041
SyntenyPay0008041
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005686 - U2 snRNP (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
InterPro domainsIPR009846 - Splicing factor 3B subunit 5/RDS3 complex subunit 10
IPR017089 - Splicing factor 3B, subunit 5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134645.1 uncharacterized protein At4g14342 [Cucumis sativus]7.9e-44100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

XP_015887858.1 uncharacterized protein At4g14342 [Ziziphus jujuba]1.0e-4398.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

XP_021593515.1 uncharacterized protein At4g14342 [Manihot esculenta]1.3e-4397.7Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYPILAYFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

XP_031271203.1 uncharacterized protein At4g14342 isoform X1 [Pistacia vera]1.0e-4398.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

XP_038719409.1 uncharacterized protein At4g14342 [Tripterygium wilfordii]1.3e-4397.7Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

TrEMBL top hitse value%identityAlignment
A0A0A0KKG4 Splicing factor subunit3.8e-44100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

A0A1S3AZE4 Splicing factor subunit3.8e-44100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

A0A5A7UDP6 Splicing factor subunit3.8e-44100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

A0A6J1IBJ4 Splicing factor subunit5.0e-4498.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

E5GC24 Splicing factor subunit3.8e-44100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

SwissProt top hitse value%identityAlignment
P58728 Uncharacterized protein At4g143422.8e-4491.95Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFA+AENESIGRERYNFMQKMLLPCGLPPERE++
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

Q56K13 Splicing factor 3B subunit 51.2e-2659.52Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFA+AENES  R R+N M+KML PCG P ++ ++
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

Q9BWJ5 Splicing factor 3B subunit 51.2e-2659.52Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFA+AENES  R R+N M+KML PCG P ++ ++
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

Q9LW64 Uncharacterized protein At3g233252.8e-4491.95Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFA+AENESIGRERYNFMQKMLLPCGLPPERED+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

Q9VHI4 Splicing factor 3B subunit 52.8e-2865.06Show/hide
Query:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YFA+AENES  R R+N M++ML PCG PPE+ +D
Subjt:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

Arabidopsis top hitse value%identityAlignment
AT3G23325.1 Splicing factor 3B subunit 5/RDS3 complex subunit 102.0e-4591.95Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFA+AENESIGRERYNFMQKMLLPCGLPPERED+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

AT4G14342.1 Splicing factor 3B subunit 5/RDS3 complex subunit 102.0e-4591.95Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFA+AENESIGRERYNFMQKMLLPCGLPPERE++
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACCGGGCATGCCGACTTAAACAGATTTGAGTGGGCAGTGAACAT
TCAGCGTGATAGCTATGCATCTTATGTTGGACATTACCCCATTCTAGCGTACTTTGCTGTAGCAGAAAATGAATCTATTGGGAGGGAACGCTATAACTTTATGCAGAAAA
TGTTACTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGA
mRNA sequenceShow/hide mRNA sequence
TTCTTTTGTTAAAGTAGATAAAATAATCATAATATATTGTTATTAAAAAAACCATATCGACTCTCAAAGTTTTGTTCATCATTTATGCTTTTGGGGTTTGACTAAAAGAA
ATTGTTAGGGGGTGGGGTTCTTCTTGAAACCCTAGGGAGTGAACTGTGCTGGACCTTTCGCTCGCCTGCCTTCTCTGCTTCGTCGCGCCTATTGCAATTTGCGAGCGAAC
ATGCAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACCGGGCATGCCGACTTAAACAGATTTGAGTGGGCAGTGAACAT
TCAGCGTGATAGCTATGCATCTTATGTTGGACATTACCCCATTCTAGCGTACTTTGCTGTAGCAGAAAATGAATCTATTGGGAGGGAACGCTATAACTTTATGCAGAAAA
TGTTACTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGAGATTGTTATCATTAAGTAATTTAAGTTGTAGTTAAGATTGCGAATGATTAGACATTATAGGGTTAA
TGAATTTCTTCTTTATGAACCAACGATGTGTTTGTATGGTAGGAAGTGTACGATTCATTTTTCCATGTTCCGGTTATGTAAGGTTTACGCATTCCCAGGTACTATTTCCT
CGACCTCGTCCTTTTTGTTATAAGAACAAGGTCCATCTCATTCATAGTTTATAAAATTGTTTGTAAACTATAATTACATATAATAGCTGTTGGCCTGAAATAATTAAGAA
ATGGAAGTTTCCATTAGTTAATTTGTTTGATTGAATGGTGCTCCCACAAACCATAGAGATTTTCGGGATCATTTTCCTC
Protein sequenceShow/hide protein sequence
MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD