; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Pay0008044 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0008044
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionPol protein
Genome locationchr08:12440702..12441607
RNA-Seq ExpressionPay0008044
SyntenyPay0008044
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR016197 - Chromo-like domain superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAO45752.1 pol protein [Cucumis melo subsp. melo]6.1e-16898.01Show/hide
Query:  MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA
        MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA
Subjt:  MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA

Query:  LYGRCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG
        LYGRCCRSPVCW EVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG
Subjt:  LYGRCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG

Query:  PVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
        PVAYRLALPPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVE+PVEVLAR VKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELF 
Subjt:  PVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE

Query:  E
        E
Subjt:  E

KAA0041424.1 pol protein [Cucumis melo var. makuwa]7.2e-16997.67Show/hide
Query:  MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA
        MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA
Subjt:  MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA

Query:  LYGRCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG
        LYG+CCRSPVCWDEVGEQRLMGPELVQSTNEA+QKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILER+G
Subjt:  LYGRCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG

Query:  PVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
        PVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVD EPLEIDENLSYVE+PVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYP+LFE
Subjt:  PVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE

Query:  E
        E
Subjt:  E

KAA0043401.1 pol protein [Cucumis melo var. makuwa]5.0e-17099Show/hide
Query:  MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA
        MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA
Subjt:  MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA

Query:  LYGRCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG
        LYGRCCRSPVCW EVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG
Subjt:  LYGRCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG

Query:  PVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
        PVAYRLALPPSLSAVHDVFH+SMLRKYVPDPSHVVDYEPLEIDENLSYVE+PVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Subjt:  PVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE

Query:  E
        E
Subjt:  E

KAA0043669.1 pol protein [Cucumis melo var. makuwa]4.2e-16998.34Show/hide
Query:  MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA
        MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP SWDSHLHLMEFAYNNSYQATIGMAPFEA
Subjt:  MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA

Query:  LYGRCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG
        LYGRCCRSPVCWDEVGEQRLMGPELVQSTNEA+QKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG
Subjt:  LYGRCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG

Query:  PVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
        PVAYRLALPPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELF 
Subjt:  PVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE

Query:  E
        E
Subjt:  E

KAA0051368.1 pol protein [Cucumis melo var. makuwa]1.1e-16999Show/hide
Query:  MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA
        MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA
Subjt:  MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA

Query:  LYGRCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG
        LYGRCCRSPVCW EVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG
Subjt:  LYGRCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG

Query:  PVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
        PVAYRLALPPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVE+PVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Subjt:  PVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE

Query:  E
        E
Subjt:  E

TrEMBL top hitse value%identityAlignment
A0A5A7TDB5 Pol protein3.5e-16997.67Show/hide
Query:  MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA
        MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA
Subjt:  MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA

Query:  LYGRCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG
        LYG+CCRSPVCWDEVGEQRLMGPELVQSTNEA+QKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILER+G
Subjt:  LYGRCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG

Query:  PVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
        PVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVD EPLEIDENLSYVE+PVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYP+LFE
Subjt:  PVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE

Query:  E
        E
Subjt:  E

A0A5A7TPA9 Pol protein2.4e-17099Show/hide
Query:  MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA
        MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA
Subjt:  MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA

Query:  LYGRCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG
        LYGRCCRSPVCW EVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG
Subjt:  LYGRCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG

Query:  PVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
        PVAYRLALPPSLSAVHDVFH+SMLRKYVPDPSHVVDYEPLEIDENLSYVE+PVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Subjt:  PVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE

Query:  E
        E
Subjt:  E

A0A5A7TR61 Pol protein2.0e-16998.34Show/hide
Query:  MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA
        MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP SWDSHLHLMEFAYNNSYQATIGMAPFEA
Subjt:  MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA

Query:  LYGRCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG
        LYGRCCRSPVCWDEVGEQRLMGPELVQSTNEA+QKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG
Subjt:  LYGRCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG

Query:  PVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
        PVAYRLALPPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELF 
Subjt:  PVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE

Query:  E
        E
Subjt:  E

A0A5A7U7V9 Reverse transcriptase5.3e-17099Show/hide
Query:  MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA
        MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA
Subjt:  MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA

Query:  LYGRCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG
        LYGRCCRSPVCW EVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG
Subjt:  LYGRCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG

Query:  PVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
        PVAYRLALPPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVE+PVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Subjt:  PVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE

Query:  E
        E
Subjt:  E

Q84KB0 Pol protein2.9e-16898.01Show/hide
Query:  MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA
        MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA
Subjt:  MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEA

Query:  LYGRCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG
        LYGRCCRSPVCW EVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG
Subjt:  LYGRCCRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIG

Query:  PVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
        PVAYRLALPPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVE+PVEVLAR VKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELF 
Subjt:  PVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE

Query:  E
        E
Subjt:  E

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein5.2e-2933.92Show/hide
Query:  IVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG
        ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++ 
Subjt:  IVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG

Query:  RC-CRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGP
             SP+      ++     E  Q T +  Q ++  ++T   + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP
Subjt:  RC-CRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGP

Query:  VAYRLALPPSLSAV-HDVFHVSMLRKY
          Y L LP S+  +    FHVS L KY
Subjt:  VAYRLALPPSLSAV-HDVFHVSMLRKY

P0CT35 Transposon Tf2-2 polyprotein5.2e-2933.92Show/hide
Query:  IVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG
        ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++ 
Subjt:  IVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG

Query:  RC-CRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGP
             SP+      ++     E  Q T +  Q ++  ++T   + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP
Subjt:  RC-CRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGP

Query:  VAYRLALPPSLSAV-HDVFHVSMLRKY
          Y L LP S+  +    FHVS L KY
Subjt:  VAYRLALPPSLSAV-HDVFHVSMLRKY

P0CT36 Transposon Tf2-3 polyprotein5.2e-2933.92Show/hide
Query:  IVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG
        ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++ 
Subjt:  IVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG

Query:  RC-CRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGP
             SP+      ++     E  Q T +  Q ++  ++T   + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP
Subjt:  RC-CRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGP

Query:  VAYRLALPPSLSAV-HDVFHVSMLRKY
          Y L LP S+  +    FHVS L KY
Subjt:  VAYRLALPPSLSAV-HDVFHVSMLRKY

P0CT41 Transposon Tf2-12 polyprotein5.2e-2933.92Show/hide
Query:  IVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG
        ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++ 
Subjt:  IVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG

Query:  RC-CRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGP
             SP+      ++     E  Q T +  Q ++  ++T   + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP
Subjt:  RC-CRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGP

Query:  VAYRLALPPSLSAV-HDVFHVSMLRKY
          Y L LP S+  +    FHVS L KY
Subjt:  VAYRLALPPSLSAV-HDVFHVSMLRKY

Q9UR07 Transposon Tf2-11 polyprotein5.2e-2933.92Show/hide
Query:  IVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG
        ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +   M PFE ++ 
Subjt:  IVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG

Query:  RC-CRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGP
             SP+      ++     E  Q T +  Q ++  ++T   + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP
Subjt:  RC-CRSPVCWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGP

Query:  VAYRLALPPSLSAV-HDVFHVSMLRKY
          Y L LP S+  +    FHVS L KY
Subjt:  VAYRLALPPSLSAV-HDVFHVSMLRKY

Arabidopsis top hitse value%identityAlignment
AT1G42190.1 GAG/POL/ENV polyprotein7.7e-0443.48Show/hide
Query:  YRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYV
        Y+L LP  + A H VFHVSMLRK +    +V+   P ++ EN+  V
Subjt:  YRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTTTGGAAGGGTTTGCAGACTGCTATGGGCACGAG
GTTGGACTTTAGTACGGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAGGTTTTAGAGGATATGTTACGGGCGTGTGCATTGGAATTTCCAGGTAGCT
GGGACTCCCACTTACATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCGTTTGAGGCCCTGTACGGCAGATGTTGTAGATCCCCGGTT
TGCTGGGATGAGGTAGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCAATACAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACA
GAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGATAGGGGATAAGGTGTTCTTAAAGGTAGCACCTATGAAAGGTGTCTTGCGTTTTGAAAGGAGGGGAA
AGTTGAGTCCCCGTTTTGTTGGGCCATTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGCTTGGCGTTGCCTCCATCACTCTCGGCAGTCCATGATGTGTTTCAC
GTTTCTATGTTGAGGAAGTACGTGCCAGATCCCTCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATGTTGAACGACCTGTTGAGGTGCTGGC
TAGAGAGGTGAAGACGTTGAGAAATAAACAAATTCCCCTAGTTAAAGTCTTATGGCGGAATCACCGAGTAGAAGAGGCTACATGGGAGCGTGAAGACGACATGAGATCCC
GTTATCCCGAACTGTTCGAGGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTTTGGAAGGGTTTGCAGACTGCTATGGGCACGAG
GTTGGACTTTAGTACGGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAGGTTTTAGAGGATATGTTACGGGCGTGTGCATTGGAATTTCCAGGTAGCT
GGGACTCCCACTTACATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCGTTTGAGGCCCTGTACGGCAGATGTTGTAGATCCCCGGTT
TGCTGGGATGAGGTAGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCAATACAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACA
GAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGATAGGGGATAAGGTGTTCTTAAAGGTAGCACCTATGAAAGGTGTCTTGCGTTTTGAAAGGAGGGGAA
AGTTGAGTCCCCGTTTTGTTGGGCCATTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGCTTGGCGTTGCCTCCATCACTCTCGGCAGTCCATGATGTGTTTCAC
GTTTCTATGTTGAGGAAGTACGTGCCAGATCCCTCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATGTTGAACGACCTGTTGAGGTGCTGGC
TAGAGAGGTGAAGACGTTGAGAAATAAACAAATTCCCCTAGTTAAAGTCTTATGGCGGAATCACCGAGTAGAAGAGGCTACATGGGAGCGTGAAGACGACATGAGATCCC
GTTATCCCGAACTGTTCGAGGAATAA
Protein sequenceShow/hide protein sequence
MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPV
CWDEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFH
VSMLRKYVPDPSHVVDYEPLEIDENLSYVERPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE