CuGenDBv2

Gene ID	Pay0008537
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	tRNA modification GTPase MnmE
Genome location	chr03:2259692..2261871
RNA-Seq Expression	Pay0008537
Synteny	Pay0008537
Gene Ontology terms	GO:0000002 - mitochondrial genome maintenance (biological process) GO:0002098 - tRNA wobble uridine modification (biological process) GO:0006264 - mitochondrial DNA replication (biological process) GO:0030488 - tRNA methylation (biological process) GO:0045910 - negative regulation of DNA recombination (biological process) GO:0051096 - positive regulation of helicase activity (biological process) GO:0005829 - cytosol (cellular component) GO:0042645 - mitochondrial nucleoid (cellular component) GO:0003697 - single-stranded DNA binding (molecular function) GO:0003924 - GTPase activity (molecular function) GO:0005525 - GTP binding (molecular function)
InterPro domains	IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004152725.1 protein OSB1, mitochondrial [Cucumis sativus]

1.7e-36

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Query:  MKAVRLLFSLRPVTTSPSPSVALFSSSSSLITKSMNSVATEAKKQGSVYKNQPKFTWKSANFFGTVERPLKVITWNCHTVMAWTILRAKVSSDSNSSFSV
        MKAVRLLFSLRPVTT PSPSVALFSSSSSLITKSMNSVATEAKKQGSVY++QPKF WKSANFFGTVERPLKV T NC TV AWTILRAK S DS+SSF +
Subjt:  MKAVRLLFSLRPVTTSPSPSVALFSSSSSLITKSMNSVATEAKKQGSVYKNQPKFTWKSANFFGTVERPLKVITWNCHTVMAWTILRAKVSSDSNSSFSV

XP_008444653.1 PREDICTED: protein OSB1, mitochondrial-like [Cucumis melo]

5.9e-42

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Query:  MKAVRLLFSLRPVTTSPSPSVALFSSSSSLITKSMNSVATEAKKQGSVYKNQPKFTWKSANFFGTVERPLKVITWNCHTVMAWTILRAKVSSDSNSSFSV
        MKAVRLLFSLRPVTTSPSPSVALFSSSSSL TKSMNSVATEAKKQGSVYKNQPKFTWKSANF+GTVERPLKVITWNC TVMAWTILRAKVS DSNSSF +
Subjt:  MKAVRLLFSLRPVTTSPSPSVALFSSSSSLITKSMNSVATEAKKQGSVYKNQPKFTWKSANFFGTVERPLKVITWNCHTVMAWTILRAKVSSDSNSSFSV

XP_022951824.1 protein OSB1, mitochondrial-like [Cucurbita moschata]

1.4e-19

63.92

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Query:  MKAVRLLFSLRPVTTSPSPSVALFSSSSSLITKSMNSVATEAKKQGSVYKNQPKFTWKSANFFGTVERPLKVITWNCHTVMAWTILRAKVSSDSNSS
        M+A R L +LR VT SP P VA FSS SS+ TKS N VAT+A   GSV++N+ KF W SA F GTVE+PLKV T N  TV AWT LRAKVS DSNSS
Subjt:  MKAVRLLFSLRPVTTSPSPSVALFSSSSSLITKSMNSVATEAKKQGSVYKNQPKFTWKSANFFGTVERPLKVITWNCHTVMAWTILRAKVSSDSNSS

XP_023002011.1 protein OSB1, mitochondrial-like [Cucurbita maxima]

1.9e-19

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Query:  MKAVRLLFSLRPVTTSPSPSVALFSSSSSLITKSMNSVATEAKKQGSVYKNQPKFTWKSANFFGTVERPLKVITWNCHTVMAWTILRAKVSSDSNSSFSV
        M+AVRLL  LR VT SP P VA FSS SS+ TKS N VAT+A   G V++N  KF W +A F GTVE+PLKV T N  TV AWT LRAKVS DS+SSF +
Subjt:  MKAVRLLFSLRPVTTSPSPSVALFSSSSSLITKSMNSVATEAKKQGSVYKNQPKFTWKSANFFGTVERPLKVITWNCHTVMAWTILRAKVSSDSNSSFSV

XP_038886148.1 protein OSB1, mitochondrial-like [Benincasa hispida]

9.2e-27

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Query:  MKAVRLLFSLRPVTTSPSPSVALFSSSSSLITKSMNSVATEAKKQGSVYKNQPKFTWKSANFFGTVERPLKVITWNCHTVMAWTILRAKVSSDSNSSFSV
        M+AVRLLF +R V  SPSP VALFSSSS LITKS N VATEAKK GSV++ QPKF W SANFFGTVE PL+V+T N  TV+A TILRAKVS DSN SF +
Subjt:  MKAVRLLFSLRPVTTSPSPSVALFSSSSSLITKSMNSVATEAKKQGSVYKNQPKFTWKSANFFGTVERPLKVITWNCHTVMAWTILRAKVSSDSNSSFSV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LNI3 Uncharacterized protein

8.1e-37

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Query:  MKAVRLLFSLRPVTTSPSPSVALFSSSSSLITKSMNSVATEAKKQGSVYKNQPKFTWKSANFFGTVERPLKVITWNCHTVMAWTILRAKVSSDSNSSFSV
        MKAVRLLFSLRPVTT PSPSVALFSSSSSLITKSMNSVATEAKKQGSVY++QPKF WKSANFFGTVERPLKV T NC TV AWTILRAK S DS+SSF +
Subjt:  MKAVRLLFSLRPVTTSPSPSVALFSSSSSLITKSMNSVATEAKKQGSVYKNQPKFTWKSANFFGTVERPLKVITWNCHTVMAWTILRAKVSSDSNSSFSV

A0A1S3BBN5 protein OSB1, mitochondrial-like

2.9e-42

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Query:  MKAVRLLFSLRPVTTSPSPSVALFSSSSSLITKSMNSVATEAKKQGSVYKNQPKFTWKSANFFGTVERPLKVITWNCHTVMAWTILRAKVSSDSNSSFSV
        MKAVRLLFSLRPVTTSPSPSVALFSSSSSL TKSMNSVATEAKKQGSVYKNQPKFTWKSANF+GTVERPLKVITWNC TVMAWTILRAKVS DSNSSF +
Subjt:  MKAVRLLFSLRPVTTSPSPSVALFSSSSSLITKSMNSVATEAKKQGSVYKNQPKFTWKSANFFGTVERPLKVITWNCHTVMAWTILRAKVSSDSNSSFSV

A0A5A7VHQ1 Protein OSB1

2.9e-42

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Query:  MKAVRLLFSLRPVTTSPSPSVALFSSSSSLITKSMNSVATEAKKQGSVYKNQPKFTWKSANFFGTVERPLKVITWNCHTVMAWTILRAKVSSDSNSSFSV
        MKAVRLLFSLRPVTTSPSPSVALFSSSSSL TKSMNSVATEAKKQGSVYKNQPKFTWKSANF+GTVERPLKVITWNC TVMAWTILRAKVS DSNSSF +
Subjt:  MKAVRLLFSLRPVTTSPSPSVALFSSSSSLITKSMNSVATEAKKQGSVYKNQPKFTWKSANFFGTVERPLKVITWNCHTVMAWTILRAKVSSDSNSSFSV

A0A6J1GJW3 protein OSB1, mitochondrial-like

6.9e-20

63.92

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Query:  MKAVRLLFSLRPVTTSPSPSVALFSSSSSLITKSMNSVATEAKKQGSVYKNQPKFTWKSANFFGTVERPLKVITWNCHTVMAWTILRAKVSSDSNSS
        M+A R L +LR VT SP P VA FSS SS+ TKS N VAT+A   GSV++N+ KF W SA F GTVE+PLKV T N  TV AWT LRAKVS DSNSS
Subjt:  MKAVRLLFSLRPVTTSPSPSVALFSSSSSLITKSMNSVATEAKKQGSVYKNQPKFTWKSANFFGTVERPLKVITWNCHTVMAWTILRAKVSSDSNSS

A0A6J1KK72 protein OSB1, mitochondrial-like

9.0e-20

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Query:  MKAVRLLFSLRPVTTSPSPSVALFSSSSSLITKSMNSVATEAKKQGSVYKNQPKFTWKSANFFGTVERPLKVITWNCHTVMAWTILRAKVSSDSNSSFSV
        M+AVRLL  LR VT SP P VA FSS SS+ TKS N VAT+A   G V++N  KF W +A F GTVE+PLKV T N  TV AWT LRAKVS DS+SSF +
Subjt:  MKAVRLLFSLRPVTTSPSPSVALFSSSSSLITKSMNSVATEAKKQGSVYKNQPKFTWKSANFFGTVERPLKVITWNCHTVMAWTILRAKVSSDSNSSFSV

SwissProt top hits

e value

%identity

Alignment

A0AMD2 tRNA modification GTPase MnmE

1.5e-11

58.73

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Query:  RAKVSSDSNSSFSVQSERAIVTEIAGTTRDVIEANVTVSGIPMTLLDTAEIRETDDIVEKIGM
        R  V   S  +  +Q E+AIVT+IAGTTRD+IE  V V G+P+ L+DTA IRET+DIVEKIG+
Subjt:  RAKVSSDSNSSFSVQSERAIVTEIAGTTRDVIEANVTVSGIPMTLLDTAEIRETDDIVEKIGM

A4W2N6 tRNA modification GTPase MnmE

1.9e-11

58.73

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Query:  RAKVSSDSNSSFSVQSERAIVTEIAGTTRDVIEANVTVSGIPMTLLDTAEIRETDDIVEKIGM
        R  V   S  +  ++ E+AIVT+IAGTTRDVIE  V + G+P+ L+DTA IRETDDIVEKIG+
Subjt:  RAKVSSDSNSSFSVQSERAIVTEIAGTTRDVIEANVTVSGIPMTLLDTAEIRETDDIVEKIGM

Q71VV0 tRNA modification GTPase MnmE

1.5e-11

58.73

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Query:  RAKVSSDSNSSFSVQSERAIVTEIAGTTRDVIEANVTVSGIPMTLLDTAEIRETDDIVEKIGM
        R  V   S  +  +Q E+AIVT+IAGTTRD+IE  V V G+P+ L+DTA IRET+DIVEKIG+
Subjt:  RAKVSSDSNSSFSVQSERAIVTEIAGTTRDVIEANVTVSGIPMTLLDTAEIRETDDIVEKIGM

Q8Y3M4 tRNA modification GTPase MnmE

1.5e-11

58.73

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Query:  RAKVSSDSNSSFSVQSERAIVTEIAGTTRDVIEANVTVSGIPMTLLDTAEIRETDDIVEKIGM
        R  V   S  +  +Q E+AIVT+IAGTTRD+IE  V V G+P+ L+DTA IRET+DIVEKIG+
Subjt:  RAKVSSDSNSSFSVQSERAIVTEIAGTTRDVIEANVTVSGIPMTLLDTAEIRETDDIVEKIGM

Q926U7 tRNA modification GTPase MnmE

1.5e-11

58.73

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Query:  RAKVSSDSNSSFSVQSERAIVTEIAGTTRDVIEANVTVSGIPMTLLDTAEIRETDDIVEKIGM
        R  V   S  +  +Q E+AIVT+IAGTTRD+IE  V V G+P+ L+DTA IRET+DIVEKIG+
Subjt:  RAKVSSDSNSSFSVQSERAIVTEIAGTTRDVIEANVTVSGIPMTLLDTAEIRETDDIVEKIGM

Arabidopsis top hits

e value

%identity

Alignment

AT1G78010.1 tRNA modification GTPase, putative

1.7e-15

68.25

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Query:  RAKVSSDSNSSFSVQSERAIVTEIAGTTRDVIEANVTVSGIPMTLLDTAEIRETDDIVEKIGM
        R  V   S  +   +SERAIVTE+AGTTRDV+EANVTV G+P+TLLDTA IRET+DIVEKIG+
Subjt:  RAKVSSDSNSSFSVQSERAIVTEIAGTTRDVIEANVTVSGIPMTLLDTAEIRETDDIVEKIGM

Sequences

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CDS sequence

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ATGAAGGCCGTTCGCCTTCTCTTTTCCCTTAGACCAGTGACTACCTCGCCTTCGCCATCGGTAGCGTTATTCTCTTCGTCTTCATCATTAATCACTAAATCAATGAACTC
TGTCGCCACTGAGGCAAAAAAGCAAGGTTCTGTATACAAAAATCAGCCGAAATTTACGTGGAAGTCTGCTAATTTCTTTGGTACAGTTGAACGACCCCTTAAAGTGATTA
CCTGGAACTGTCACACAGTTATGGCTTGGACAATTCTTCGTGCCAAAGTCTCTTCAGATTCTAACAGCAGTTTTAGTGTGCAAAGCGAGAGGGCAATAGTTACAGAAATT
GCTGGAACTACCAGGGATGTAATTGAAGCAAATGTAACAGTTTCTGGCATTCCTATGACTCTTCTTGACACAGCTGAAATTAGGGAAACAGATGACATCGTAGAAAAGAT
TGGTATGATTTACAAATTTCCTAATATTTAG

mRNA sequence

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Protein sequence

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MKAVRLLFSLRPVTTSPSPSVALFSSSSSLITKSMNSVATEAKKQGSVYKNQPKFTWKSANFFGTVERPLKVITWNCHTVMAWTILRAKVSSDSNSSFSVQSERAIVTEI
AGTTRDVIEANVTVSGIPMTLLDTAEIRETDDIVEKIGMIYKFPNI

Pay0008537 (gene) of Melon (Payzawat) v1 genome