CuGenDBv2

Gene ID	Pay0008540
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Reverse transcriptase
Genome location	chr07:10181494..10181982
RNA-Seq Expression	Pay0008540
Synteny	Pay0008540
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR016197 - Chromo-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025802.1 pol protein [Cucumis melo var. makuwa]

1.9e-60

76.54

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Query:  MLTAQSRHKSYADVRHKDLEFDVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSFSIVHDVFHVPMLRKYVADSTHVIDFEP
        MLTAQSRHKSYADVR K LEF+VGDMVFLKVAPMKG                      RIGPVAYRLALPPSFS VHDV HV MLR+YVAD THV+DFEP
Subjt:  MLTAQSRHKSYADVRHKDLEFDVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSFSIVHDVFHVPMLRKYVADSTHVIDFEP

Query:  LQIKENLSYEEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDMTAQYPELFKD
        LQI ENLSYEEQPVEILAREVK LHNR ISLVKVLWRNHG+EEATWEREEDM AQYP+LF+D
Subjt:  LQIKENLSYEEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDMTAQYPELFKD

KAA0034786.1 pol protein [Cucumis melo var. makuwa]

4.8e-59

77.16

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Query:  MLTAQSRHKSYADVRHKDLEFDVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSFSIVHDVFHVPMLRKYVADSTHVIDFEP
        MLTAQSR KSY DVR KDLEF+VGDMVFLKVAPMKG                      RIGPVAYRLAL  SFS VHDVFHV MLRKYVAD THV+DFEP
Subjt:  MLTAQSRHKSYADVRHKDLEFDVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSFSIVHDVFHVPMLRKYVADSTHVIDFEP

Query:  LQIKENLSYEEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDMTAQYPELFKD
        LQIKENLSYEEQPVEILAREVKML NRGI+LVKVLW NHGVEEATWEREEDM AQYPELF+D
Subjt:  LQIKENLSYEEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDMTAQYPELFKD

KAA0040942.1 pol protein [Cucumis melo var. makuwa]

9.7e-60

74.07

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Query:  MLTAQSRHKSYADVRHKDLEFDVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSFSIVHDVFHVPMLRKYVADSTHVIDFEP
        MLTAQSR KSYADVR KDLEF+VGDMVFLKVAPMKG                      RIGPVAYRLALPPSF++VHDVFH+ MLRKYVAD THV+DFEP
Subjt:  MLTAQSRHKSYADVRHKDLEFDVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSFSIVHDVFHVPMLRKYVADSTHVIDFEP

Query:  LQIKENLSYEEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDMTAQYPELFKD
        LQI ENLSYEEQPVE+LAREVK LH+R I LVK+LW+NHGVEEATWE+EEDM AQYPELF+D
Subjt:  LQIKENLSYEEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDMTAQYPELFKD

KAA0063370.1 pol protein [Cucumis melo var. makuwa]

3.7e-59

75.93

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Query:  MLTAQSRHKSYADVRHKDLEFDVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSFSIVHDVFHVPMLRKYVADSTHVIDFEP
        MLTAQSR KSYADVR KDLEF+VGDMVFLKVAPMKG                      RIGPVAYRLALPPSFS VHDVFHV MLR+YVAD THV+DFEP
Subjt:  MLTAQSRHKSYADVRHKDLEFDVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSFSIVHDVFHVPMLRKYVADSTHVIDFEP

Query:  LQIKENLSYEEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDMTAQYPELFKD
        LQI ENLSYEEQPVE+LAREVK L +R ISLVKVLWRNHGVEEATWEREEDM A YPELF+D
Subjt:  LQIKENLSYEEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDMTAQYPELFKD

TYK29789.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.3e-59

77.16

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Query:  MLTAQSRHKSYADVRHKDLEFDVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSFSIVHDVFHVPMLRKYVADSTHVIDFEP
        MLTAQSR KSYAD R KDLEFDVGDMVFLKVAPMKG                      RIGPVAYRLALPPSFS VHDVFHV MLR+YVAD THV+ FEP
Subjt:  MLTAQSRHKSYADVRHKDLEFDVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSFSIVHDVFHVPMLRKYVADSTHVIDFEP

Query:  LQIKENLSYEEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDMTAQYPELFKD
        LQI E+LSYEEQPVEILAREVKML NR ISLVKVLWRNHGVEEATWEREEDM AQYPELF+D
Subjt:  LQIKENLSYEEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDMTAQYPELFKD

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SKZ1 Pol protein

9.4e-61

76.54

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Query:  MLTAQSRHKSYADVRHKDLEFDVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSFSIVHDVFHVPMLRKYVADSTHVIDFEP
        MLTAQSRHKSYADVR K LEF+VGDMVFLKVAPMKG                      RIGPVAYRLALPPSFS VHDV HV MLR+YVAD THV+DFEP
Subjt:  MLTAQSRHKSYADVRHKDLEFDVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSFSIVHDVFHVPMLRKYVADSTHVIDFEP

Query:  LQIKENLSYEEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDMTAQYPELFKD
        LQI ENLSYEEQPVEILAREVK LHNR ISLVKVLWRNHG+EEATWEREEDM AQYP+LF+D
Subjt:  LQIKENLSYEEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDMTAQYPELFKD

A0A5A7TBV4 Pol protein

4.7e-60

74.07

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Query:  MLTAQSRHKSYADVRHKDLEFDVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSFSIVHDVFHVPMLRKYVADSTHVIDFEP
        MLTAQSR KSYADVR KDLEF+VGDMVFLKVAPMKG                      RIGPVAYRLALPPSF++VHDVFH+ MLRKYVAD THV+DFEP
Subjt:  MLTAQSRHKSYADVRHKDLEFDVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSFSIVHDVFHVPMLRKYVADSTHVIDFEP

Query:  LQIKENLSYEEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDMTAQYPELFKD
        LQI ENLSYEEQPVE+LAREVK LH+R I LVK+LW+NHGVEEATWE+EEDM AQYPELF+D
Subjt:  LQIKENLSYEEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDMTAQYPELFKD

A0A5A7TG62 Reverse transcriptase

2.3e-59

74.69

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Query:  MLTAQSRHKSYADVRHKDLEFDVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSFSIVHDVFHVPMLRKYVADSTHVIDFEP
        MLTAQSR KSYADVR KDLEF+VGDMVFLKVAPMKG                      RIGPVAYRLALPPSF+ VHDVFH+ MLRKYVAD THV+DFEP
Subjt:  MLTAQSRHKSYADVRHKDLEFDVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSFSIVHDVFHVPMLRKYVADSTHVIDFEP

Query:  LQIKENLSYEEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDMTAQYPELFKD
        LQI ENLSYEEQPVE+LAREVK L +R ISLVKVLW+NHGVEEATWE+EEDM AQYPELF+D
Subjt:  LQIKENLSYEEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDMTAQYPELFKD

A0A5A7V809 Reverse transcriptase

1.8e-59

75.93

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Query:  MLTAQSRHKSYADVRHKDLEFDVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSFSIVHDVFHVPMLRKYVADSTHVIDFEP
        MLTAQSR KSYADVR KDLEF+VGDMVFLKVAPMKG                      RIGPVAYRLALPPSFS VHDVFHV MLR+YVAD THV+DFEP
Subjt:  MLTAQSRHKSYADVRHKDLEFDVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSFSIVHDVFHVPMLRKYVADSTHVIDFEP

Query:  LQIKENLSYEEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDMTAQYPELFKD
        LQI ENLSYEEQPVE+LAREVK L +R ISLVKVLWRNHGVEEATWEREEDM A YPELF+D
Subjt:  LQIKENLSYEEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDMTAQYPELFKD

A0A5D3E202 Ty3-gypsy retrotransposon protein

6.1e-60

77.16

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Query:  MLTAQSRHKSYADVRHKDLEFDVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSFSIVHDVFHVPMLRKYVADSTHVIDFEP
        MLTAQSR KSYAD R KDLEFDVGDMVFLKVAPMKG                      RIGPVAYRLALPPSFS VHDVFHV MLR+YVAD THV+ FEP
Subjt:  MLTAQSRHKSYADVRHKDLEFDVGDMVFLKVAPMKG----------------------RIGPVAYRLALPPSFSIVHDVFHVPMLRKYVADSTHVIDFEP

Query:  LQIKENLSYEEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDMTAQYPELFKD
        LQI E+LSYEEQPVEILAREVKML NR ISLVKVLWRNHGVEEATWEREEDM AQYPELF+D
Subjt:  LQIKENLSYEEQPVEILAREVKMLHNRGISLVKVLWRNHGVEEATWEREEDMTAQYPELFKD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTGACAGCACAGAGCAGACACAAGAGTTATGCTGATGTACGGCATAAGGATCTCGAGTTTGATGTGGGAGACATGGTTTTTCTGAAGGTAGCACCTATGAAGGGTCG
GATTGGCCCTGTAGCCTATCGTTTGGCGTTGCCCCCATCATTTTCTATAGTGCATGATGTATTCCATGTCCCCATGCTGAGGAAGTATGTCGCAGACTCGACGCATGTAA
TTGACTTCGAGCCATTGCAAATTAAGGAGAACTTGAGCTACGAGGAGCAACCTGTTGAGATTTTGGCAAGGGAGGTCAAGATGCTCCATAATCGAGGAATTTCACTGGTC
AAGGTTCTTTGGCGAAACCACGGAGTTGAAGAGGCCACATGGGAGAGAGAAGAAGACATGACAGCCCAGTACCCTGAGTTGTTCAAGGATTAG

mRNA sequence

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Protein sequence

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MLTAQSRHKSYADVRHKDLEFDVGDMVFLKVAPMKGRIGPVAYRLALPPSFSIVHDVFHVPMLRKYVADSTHVIDFEPLQIKENLSYEEQPVEILAREVKMLHNRGISLV
KVLWRNHGVEEATWEREEDMTAQYPELFKD

Pay0008540 (gene) of Melon (Payzawat) v1 genome