CuGenDBv2

Gene ID	Pay0009263
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	RNA-directed DNA polymerase
Genome location	chr06:5615438..5615770
RNA-Seq Expression	Pay0009263
Synteny	Pay0009263
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036934.1 uncharacterized protein E6C27_scaffold86G00070 [Cucumis melo var. makuwa]

1.2e-49

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Query:  MMDELCEQFKINHQNSTPYRPKMNGTVEAANKNIKRIIEKMTITYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILPLEVKIPSLRVLMEAKLD
        MMDELCEQFKINH+NSTPYRPKMNG VEAANKNIKRIIEKMTITYKDWHEMLPF LHGYRTSVRTS  ATPFSLVY ME +LPLEV+IPSLRVLMEAKLD
Subjt:  MMDELCEQFKINHQNSTPYRPKMNGTVEAANKNIKRIIEKMTITYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILPLEVKIPSLRVLMEAKLD

Query:  EAKWIRDRYE
        EA+WIR RYE
Subjt:  EAKWIRDRYE

KAA0036943.1 uncharacterized protein E6C27_scaffold86G00190 [Cucumis melo var. makuwa]

2.4e-50

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Query:  MMDELCEQFKINHQNSTPYRPKMNGTVEAANKNIKRIIEKMTITYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILPLEVKIPSLRVLMEAKLD
        MMDELCEQFKINH+NSTPYRPKMNG VEAANKNIKRI+EKMTITYKDWHEMLPF LHGYRTSVRTS EATPFSLVY ME +LPLEV+IPSLRVLMEAKLD
Subjt:  MMDELCEQFKINHQNSTPYRPKMNGTVEAANKNIKRIIEKMTITYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILPLEVKIPSLRVLMEAKLD

Query:  EAKWIRDRYE
        EA+WIR RYE
Subjt:  EAKWIRDRYE

KAA0037621.1 uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]

4.2e-50

90.91

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Query:  MMDELCEQFKINHQNSTPYRPKMNGTVEAANKNIKRIIEKMTITYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILPLEVKIPSLRVLMEAKLD
        MMDELCEQFKINH+NSTPYRPKMNG VEAANKNIKRIIEKMTITYKDWHEMLPF LHGYRTSVRTS  ATPFSLVY MEA+LPLEV+IPSLRVLMEAKLD
Subjt:  MMDELCEQFKINHQNSTPYRPKMNGTVEAANKNIKRIIEKMTITYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILPLEVKIPSLRVLMEAKLD

Query:  EAKWIRDRYE
        EA+WIR RYE
Subjt:  EAKWIRDRYE

KAA0052135.1 Pol polyprotein [Cucumis melo var. makuwa]

9.0e-53

96.36

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Query:  MMDELCEQFKINHQNSTPYRPKMNGTVEAANKNIKRIIEKMTITYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILPLEVKIPSLRVLMEAKLD
        M DELCEQFKINHQNSTPYRPKMN TVEAANKNIKRIIEKMTITYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEA+LPLEVKI SLRVLMEAKLD
Subjt:  MMDELCEQFKINHQNSTPYRPKMNGTVEAANKNIKRIIEKMTITYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILPLEVKIPSLRVLMEAKLD

Query:  EAKWIRDRYE
        EAKWIRDRYE
Subjt:  EAKWIRDRYE

TYK20464.1 putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]

4.6e-49

89.09

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Query:  MMDELCEQFKINHQNSTPYRPKMNGTVEAANKNIKRIIEKMTITYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILPLEVKIPSLRVLMEAKLD
        MMDELCEQFKINH+NSTPYRPKMN  +EAANKNIKRIIEKMTITYKDWHEMLPF LHGYRTSVRTS  ATPFSLVY MEA+LPLEV+IPSLRVLMEAKLD
Subjt:  MMDELCEQFKINHQNSTPYRPKMNGTVEAANKNIKRIIEKMTITYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILPLEVKIPSLRVLMEAKLD

Query:  EAKWIRDRYE
        EA+WIR RYE
Subjt:  EAKWIRDRYE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T0A1 Ribonuclease H

5.9e-50

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Query:  MMDELCEQFKINHQNSTPYRPKMNGTVEAANKNIKRIIEKMTITYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILPLEVKIPSLRVLMEAKLD
        MMDELCEQFKINH+NSTPYRPKMNG VEAANKNIKRIIEKMTITYKDWHEMLPF LHGYRTSVRTS  ATPFSLVY ME +LPLEV+IPSLRVLMEAKLD
Subjt:  MMDELCEQFKINHQNSTPYRPKMNGTVEAANKNIKRIIEKMTITYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILPLEVKIPSLRVLMEAKLD

Query:  EAKWIRDRYE
        EA+WIR RYE
Subjt:  EAKWIRDRYE

A0A5A7T1X2 Ribonuclease H

1.2e-50

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Query:  MMDELCEQFKINHQNSTPYRPKMNGTVEAANKNIKRIIEKMTITYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILPLEVKIPSLRVLMEAKLD
        MMDELCEQFKINH+NSTPYRPKMNG VEAANKNIKRI+EKMTITYKDWHEMLPF LHGYRTSVRTS EATPFSLVY ME +LPLEV+IPSLRVLMEAKLD
Subjt:  MMDELCEQFKINHQNSTPYRPKMNGTVEAANKNIKRIIEKMTITYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILPLEVKIPSLRVLMEAKLD

Query:  EAKWIRDRYE
        EA+WIR RYE
Subjt:  EAKWIRDRYE

A0A5A7T7R4 Ribonuclease H

2.0e-50

90.91

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Query:  MMDELCEQFKINHQNSTPYRPKMNGTVEAANKNIKRIIEKMTITYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILPLEVKIPSLRVLMEAKLD
        MMDELCEQFKINH+NSTPYRPKMNG VEAANKNIKRIIEKMTITYKDWHEMLPF LHGYRTSVRTS  ATPFSLVY MEA+LPLEV+IPSLRVLMEAKLD
Subjt:  MMDELCEQFKINHQNSTPYRPKMNGTVEAANKNIKRIIEKMTITYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILPLEVKIPSLRVLMEAKLD

Query:  EAKWIRDRYE
        EA+WIR RYE
Subjt:  EAKWIRDRYE

A0A5A7UEK4 Pol polyprotein

4.4e-53

96.36

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Query:  MMDELCEQFKINHQNSTPYRPKMNGTVEAANKNIKRIIEKMTITYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILPLEVKIPSLRVLMEAKLD
        M DELCEQFKINHQNSTPYRPKMN TVEAANKNIKRIIEKMTITYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEA+LPLEVKI SLRVLMEAKLD
Subjt:  MMDELCEQFKINHQNSTPYRPKMNGTVEAANKNIKRIIEKMTITYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILPLEVKIPSLRVLMEAKLD

Query:  EAKWIRDRYE
        EAKWIRDRYE
Subjt:  EAKWIRDRYE

A0A5D3DAC8 Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H

2.2e-49

89.09

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Query:  MMDELCEQFKINHQNSTPYRPKMNGTVEAANKNIKRIIEKMTITYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILPLEVKIPSLRVLMEAKLD
        MMDELCEQFKINH+NSTPYRPKMN  +EAANKNIKRIIEKMTITYKDWHEMLPF LHGYRTSVRTS  ATPFSLVY MEA+LPLEV+IPSLRVLMEAKLD
Subjt:  MMDELCEQFKINHQNSTPYRPKMNGTVEAANKNIKRIIEKMTITYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILPLEVKIPSLRVLMEAKLD

Query:  EAKWIRDRYE
        EA+WIR RYE
Subjt:  EAKWIRDRYE

SwissProt top hits

e value

%identity

Alignment

P23074 Pro-Pol polyprotein

5.6e-05

34.78

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Query:  STPYRPKMNGTVEAANKNIKRIIEKMTI-TYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILP
        STPY P+ +G VE  N +IKR++ K+ I     W+++LP V      S   S + TP  L++ +++  P
Subjt:  STPYRPKMNGTVEAANKNIKRIIEKMTI-TYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILP

P27401 Pro-Pol polyprotein

7.3e-05

33.33

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Query:  STPYRPKMNGTVEAANKNIKRIIEKMTI-TYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILP
        STPY P+ +G VE  N +IKR++ K+ +     W+++LP V      S   S + TP  L++ +++  P
Subjt:  STPYRPKMNGTVEAANKNIKRIIEKMTI-TYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILP

Q87040 Pro-Pol polyprotein

8.0e-04

28.4

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Query:  ELCEQFKINHQNSTPYRPKMNGTVEAANKNIKRIIEKMTI-TYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILP
        E  ++  I+ + STPY P+ +G VE  N +IKR++ K+ +     W+++LP V      +     + TP  L++ +++  P
Subjt:  ELCEQFKINHQNSTPYRPKMNGTVEAANKNIKRIIEKMTI-TYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILP

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGATGGACGAACTTTGTGAGCAGTTCAAGATCAATCACCAAAATTCGACTCCATATCGCCCAAAGATGAATGGGACAGTTGAGGCAGCAAATAAAAATATTAAAAGAAT
TATTGAGAAAATGACAATAACATACAAAGATTGGCATGAAATGCTACCGTTTGTGCTGCATGGATATCGCACATCAGTTCGTACTTCAAAAGAGGCAACACCATTTTCTT
TAGTTTATAGTATGGAAGCTATCTTACCTTTAGAAGTTAAGATACCTTCATTGAGAGTTCTCATGGAAGCTAAGTTAGATGAAGCTAAATGGATACGAGATCGTTATGAG
TAG

mRNA sequence

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Protein sequence

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MMDELCEQFKINHQNSTPYRPKMNGTVEAANKNIKRIIEKMTITYKDWHEMLPFVLHGYRTSVRTSKEATPFSLVYSMEAILPLEVKIPSLRVLMEAKLDEAKWIRDRYE

Pay0009263 (gene) of Melon (Payzawat) v1 genome