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Pay0009782 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0009782
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Descriptionpolyadenylate-binding protein 1-like
Genome locationchr07:20694097..20694507
RNA-Seq ExpressionPay0009782
SyntenyPay0009782
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026054.1 polyadenylate-binding protein 1-like [Cucumis melo var. makuwa]5.9e-32100Show/hide
Query:  MELDLQVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
        MELDLQVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
Subjt:  MELDLQVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV

KAA0060499.1 polyadenylate-binding protein 3-like isoform X2 [Cucumis melo var. makuwa]1.5e-2796.97Show/hide
Query:  QVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
        QVDYA TPEEVQQHFQSCGTVNRVTILT+KFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
Subjt:  QVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV

RYR64526.1 hypothetical protein Ahy_A03g010619 isoform B [Arachis hypogaea]1.5e-2787.67Show/hide
Query:  MELDLQVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP
        M L L+VDYA TPEEVQQHFQSCGTVNRVTILT+KFGHPKGFAYVEFVE EAVQEAL+LNE+ELHGRQLKV P
Subjt:  MELDLQVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP

TYK22852.1 polyadenylate-binding protein 3-like isoform X2 [Cucumis melo var. makuwa]2.5e-3097.18Show/hide
Query:  MELDLQVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
        MELDLQVDYA TPEEVQQHFQSCGTVNRVTILT+KFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
Subjt:  MELDLQVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV

XP_008464885.1 PREDICTED: polyadenylate-binding protein 1-like [Cucumis melo]6.3e-4295.65Show/hide
Query:  MELDLQVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAPWGKMIYVSILSSSTKANKV
        MELDLQVDYA TPEEV+QHFQSCGTVNRVTILT+KFGHPKGFAYVEFVEAEAVQEALLLNET+LHGRQLKVAPWGKMIYVSILSSSTKANKV
Subjt:  MELDLQVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAPWGKMIYVSILSSSTKANKV

TrEMBL top hitse value%identityAlignment
A0A1S3CMM9 polyadenylate-binding protein 1-like3.0e-4295.65Show/hide
Query:  MELDLQVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAPWGKMIYVSILSSSTKANKV
        MELDLQVDYA TPEEV+QHFQSCGTVNRVTILT+KFGHPKGFAYVEFVEAEAVQEALLLNET+LHGRQLKVAPWGKMIYVSILSSSTKANKV
Subjt:  MELDLQVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAPWGKMIYVSILSSSTKANKV

A0A445DMX4 RRM domain-containing protein7.3e-2887.67Show/hide
Query:  MELDLQVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP
        M L L+VDYA TPEEVQQHFQSCGTVNRVTILT+KFGHPKGFAYVEFVE EAVQEAL+LNE+ELHGRQLKV P
Subjt:  MELDLQVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP

A0A5A7SK28 Polyadenylate-binding protein 1-like2.9e-32100Show/hide
Query:  MELDLQVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
        MELDLQVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
Subjt:  MELDLQVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV

A0A5A7V432 Polyadenylate-binding protein 3-like isoform X27.3e-2896.97Show/hide
Query:  QVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
        QVDYA TPEEVQQHFQSCGTVNRVTILT+KFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
Subjt:  QVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV

A0A5D3DGW2 Polyadenylate-binding protein 3-like isoform X21.2e-3097.18Show/hide
Query:  MELDLQVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
        MELDLQVDYA TPEEVQQHFQSCGTVNRVTILT+KFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
Subjt:  MELDLQVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV

SwissProt top hitse value%identityAlignment
O14327 Polyadenylate-binding protein 27.8e-1967.65Show/hide
Query:  VDYAYTPEEVQQHFQSCGTVNRVTILTNKF-GHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP
        VDY+ TPEE+Q HF SCG+VNRVTIL +KF GHPKGFAY+EF E   V  ALLLN + LH R LKV P
Subjt:  VDYAYTPEEVQQHFQSCGTVNRVTILTNKF-GHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP

Q93VI4 Polyadenylate-binding protein 17.8e-2784.85Show/hide
Query:  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA
        VDYA TPEEVQQHFQSCGTVNRVTILT+KFG PKGFAYVEFVE EAVQ +L+LNE+ELHGRQ+KV+
Subjt:  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA

Q9DDY9 Polyadenylate-binding protein 2-A9.5e-1758.82Show/hide
Query:  VDYAYTPEEVQQHFQSCGTVNRVTILTNKF-GHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP
        VDY  T EE++ HF  CG+VNRVTIL +KF GHPKGFAY+EF + E+V+ +L L+E+   GRQ+KV P
Subjt:  VDYAYTPEEVQQHFQSCGTVNRVTILTNKF-GHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP

Q9FJN9 Polyadenylate-binding protein 21.7e-2687.69Show/hide
Query:  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
        VDYA TPEEVQQHFQ+CGTV+RVTILT+KFG PKGFAYVEFVE EAVQEAL LNE+ELHGRQLKV
Subjt:  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV

Q9LX90 Polyadenylate-binding protein 31.7e-2685.07Show/hide
Query:  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP
        VDYA TPEEVQ HFQ+CGTVNRVTIL +KFG PKGFAYVEFVE EAVQEAL LNE+ELHGRQLKV+P
Subjt:  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP

Arabidopsis top hitse value%identityAlignment
AT5G10350.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-2785.07Show/hide
Query:  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP
        VDYA TPEEVQ HFQ+CGTVNRVTIL +KFG PKGFAYVEFVE EAVQEAL LNE+ELHGRQLKV+P
Subjt:  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAP

AT5G51120.1 polyadenylate-binding protein 15.5e-2884.85Show/hide
Query:  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA
        VDYA TPEEVQQHFQSCGTVNRVTILT+KFG PKGFAYVEFVE EAVQ +L+LNE+ELHGRQ+KV+
Subjt:  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA

AT5G51120.2 polyadenylate-binding protein 15.5e-2884.85Show/hide
Query:  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA
        VDYA TPEEVQQHFQSCGTVNRVTILT+KFG PKGFAYVEFVE EAVQ +L+LNE+ELHGRQ+KV+
Subjt:  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA

AT5G51120.3 polyadenylate-binding protein 15.5e-2884.85Show/hide
Query:  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA
        VDYA TPEEVQQHFQSCGTVNRVTILT+KFG PKGFAYVEFVE EAVQ +L+LNE+ELHGRQ+KV+
Subjt:  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVA

AT5G65260.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-2787.69Show/hide
Query:  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV
        VDYA TPEEVQQHFQ+CGTV+RVTILT+KFG PKGFAYVEFVE EAVQEAL LNE+ELHGRQLKV
Subjt:  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTGGACTTGCAGGTTGATTATGCCTATACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACTATTCTCACAAATAAATTTGG
TCATCCCAAGGGCTTTGCTTATGTGGAGTTTGTTGAAGCCGAAGCTGTTCAGGAGGCACTTCTTTTAAACGAGACAGAGTTGCATGGAAGACAATTGAAGGTAGCTCCTT
GGGGAAAGATGATTTACGTTTCTATTCTATCAAGTTCAACAAAAGCGAACAAAGTTAATGAATTGGTATATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTGGACTTGCAGGTTGATTATGCCTATACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACTATTCTCACAAATAAATTTGG
TCATCCCAAGGGCTTTGCTTATGTGGAGTTTGTTGAAGCCGAAGCTGTTCAGGAGGCACTTCTTTTAAACGAGACAGAGTTGCATGGAAGACAATTGAAGGTAGCTCCTT
GGGGAAAGATGATTTACGTTTCTATTCTATCAAGTTCAACAAAAGCGAACAAAGTTAATGAATTGGTATATTGA
Protein sequenceShow/hide protein sequence
MELDLQVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKVAPWGKMIYVSILSSSTKANKVNELVY