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Pay0010250 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0010250
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description3-isopropylmalate dehydrogenase 3
Genome locationchr07:20340743..20343595
RNA-Seq ExpressionPay0010250
SyntenyPay0010250
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0009098 - leucine biosynthetic process (biological process)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0003862 - 3-isopropylmalate dehydrogenase activity (molecular function)
GO:0051287 - NAD binding (molecular function)
InterPro domainsIPR004429 - Isopropylmalate dehydrogenase
IPR024084 - Isopropylmalate dehydrogenase-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061172.1 3-isopropylmalate dehydrogenase 3 [Cucumis melo var. makuwa]3.4e-5698.31Show/hide
Query:  MANHASVN-HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAGCAKEDGLSSM
        MANHASVN HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTL RGFRIDDIYLAGCAKEDGLSSM
Subjt:  MANHASVN-HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAGCAKEDGLSSM

Query:  NLKKEEKWIPLLGIRLIR
        NLKKEEKWIPLLGIRLIR
Subjt:  NLKKEEKWIPLLGIRLIR

XP_008462868.1 PREDICTED: uncharacterized protein LOC103501151 isoform X1 [Cucumis melo]8.1e-4268.42Show/hide
Query:  MANHASVN-HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAG----CAKEDG
        MANHASVN HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTL RGFRIDDIYLAG    CA+E  
Subjt:  MANHASVN-HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAG----CAKEDG

Query:  ------LSSMNLKKEEKWIPLLGIRLI----------------RFDAQMDFR
              L  ++L++ + ++    I LI                 FDAQMDFR
Subjt:  ------LSSMNLKKEEKWIPLLGIRLI----------------RFDAQMDFR

XP_008462869.1 PREDICTED: thioredoxin-like protein 4B isoform X2 [Cucumis melo]4.0e-4176.38Show/hide
Query:  MANHASVN-HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAGCAKEDGLSSM
        MANHASVN HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTL RGFRIDDIYLAGC         
Subjt:  MANHASVN-HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAGCAKEDGLSSM

Query:  NLKKEEKWIPLLGIRL-IRFDAQMDFR
         +     +     +++   FDAQMDFR
Subjt:  NLKKEEKWIPLLGIRL-IRFDAQMDFR

XP_008462870.1 PREDICTED: 3-isopropylmalate dehydrogenase 3, chloroplastic-like isoform X3 [Cucumis melo]2.7e-6198.41Show/hide
Query:  MANHASVN-HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAGCAKEDGLSSM
        MANHASVN HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTL RGFRIDDIYLAGCAKEDGLSSM
Subjt:  MANHASVN-HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAGCAKEDGLSSM

Query:  NLKKEEKWIPLLGIRLIRFDAQMDFR
        NLKKEEKWIPLLGIRLIRFDAQMDFR
Subjt:  NLKKEEKWIPLLGIRLIRFDAQMDFR

XP_038893808.1 3-isopropylmalate dehydrogenase, chloroplastic-like [Benincasa hispida]2.2e-1585.19Show/hide
Query:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAGCAK
        +DKANPLATVLSAAMLLKYGLGEENAA RIEA VLDTLDRGFR  DIY AGC +
Subjt:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAGCAK

TrEMBL top hitse value%identityAlignment
A0A1S3CHX2 3-isopropylmalate dehydrogenase 3, chloroplastic-like isoform X31.3e-6198.41Show/hide
Query:  MANHASVN-HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAGCAKEDGLSSM
        MANHASVN HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTL RGFRIDDIYLAGCAKEDGLSSM
Subjt:  MANHASVN-HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAGCAKEDGLSSM

Query:  NLKKEEKWIPLLGIRLIRFDAQMDFR
        NLKKEEKWIPLLGIRLIRFDAQMDFR
Subjt:  NLKKEEKWIPLLGIRLIRFDAQMDFR

A0A1S3CIE3 uncharacterized protein LOC103501151 isoform X13.9e-4268.42Show/hide
Query:  MANHASVN-HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAG----CAKEDG
        MANHASVN HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTL RGFRIDDIYLAG    CA+E  
Subjt:  MANHASVN-HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAG----CAKEDG

Query:  ------LSSMNLKKEEKWIPLLGIRLI----------------RFDAQMDFR
              L  ++L++ + ++    I LI                 FDAQMDFR
Subjt:  ------LSSMNLKKEEKWIPLLGIRLI----------------RFDAQMDFR

A0A1S3CJH3 thioredoxin-like protein 4B isoform X21.9e-4176.38Show/hide
Query:  MANHASVN-HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAGCAKEDGLSSM
        MANHASVN HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTL RGFRIDDIYLAGC         
Subjt:  MANHASVN-HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAGCAKEDGLSSM

Query:  NLKKEEKWIPLLGIRL-IRFDAQMDFR
         +     +     +++   FDAQMDFR
Subjt:  NLKKEEKWIPLLGIRL-IRFDAQMDFR

A0A5A7UZ40 3-isopropylmalate dehydrogenase 31.6e-5698.31Show/hide
Query:  MANHASVN-HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAGCAKEDGLSSM
        MANHASVN HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTL RGFRIDDIYLAGCAKEDGLSSM
Subjt:  MANHASVN-HSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAGCAKEDGLSSM

Query:  NLKKEEKWIPLLGIRLIR
        NLKKEEKWIPLLGIRLIR
Subjt:  NLKKEEKWIPLLGIRLIR

A0A6J1DGT0 3-isopropylmalate dehydrogenase1.8e-1586.54Show/hide
Query:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAGC
        KDKANPLATVLSAAMLLKYGLGEENAA R+E  VLDTLDRGFR  DIY AGC
Subjt:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAGC

SwissProt top hitse value%identityAlignment
P29102 3-isopropylmalate dehydrogenase, chloroplastic2.8e-1374.51Show/hide
Query:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAG
        +DKANPLAT+LSAAMLLKYGLGEE AA RIE  VL  L++GFR  DIY AG
Subjt:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAG

P93832 3-isopropylmalate dehydrogenase 2, chloroplastic8.2e-1374.51Show/hide
Query:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAG
        +DKANPLAT+LSAAMLLKYGLGEE AA RIE  VL  L+ GFR  DIY AG
Subjt:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAG

Q31N34 3-isopropylmalate dehydrogenase5.0e-1062.75Show/hide
Query:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAG
        +DKANPLA VLSAAM+L+YGL E  AA RIEA V   LD+G+R  D+Y  G
Subjt:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAG

Q9FMT1 3-isopropylmalate dehydrogenase 1, chloroplastic9.7e-1460.56Show/hide
Query:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIY-----LAGCAK--EDGLSSMNLK
        +DKANPLAT+LSAAMLLKYGLGEE AA RIE  V+D L++GFR  DIY     L GC +  E+ L S+  K
Subjt:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIY-----LAGCAK--EDGLSSMNLK

Q9SA14 3-isopropylmalate dehydrogenase 3, chloroplastic3.7e-1359.15Show/hide
Query:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIY-----LAGCAK--EDGLSSMNLK
        +DKANPLAT+LSAAMLLKYGLGEE AA  IE  V+D L++GFR  DIY     L GC +  E+ L S++ K
Subjt:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIY-----LAGCAK--EDGLSSMNLK

Arabidopsis top hitse value%identityAlignment
AT1G31180.1 isopropylmalate dehydrogenase 32.6e-1459.15Show/hide
Query:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIY-----LAGCAK--EDGLSSMNLK
        +DKANPLAT+LSAAMLLKYGLGEE AA  IE  V+D L++GFR  DIY     L GC +  E+ L S++ K
Subjt:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIY-----LAGCAK--EDGLSSMNLK

AT1G80560.1 isopropylmalate dehydrogenase 25.8e-1474.51Show/hide
Query:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAG
        +DKANPLAT+LSAAMLLKYGLGEE AA RIE  VL  L+ GFR  DIY AG
Subjt:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAG

AT5G14200.1 isopropylmalate dehydrogenase 16.9e-1560.56Show/hide
Query:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIY-----LAGCAK--EDGLSSMNLK
        +DKANPLAT+LSAAMLLKYGLGEE AA RIE  V+D L++GFR  DIY     L GC +  E+ L S+  K
Subjt:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIY-----LAGCAK--EDGLSSMNLK

AT5G14200.3 isopropylmalate dehydrogenase 12.6e-1472.55Show/hide
Query:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAG
        +DKANPLAT+LSAAMLLKYGLGEE AA RIE  V+D L++GFR  DIY  G
Subjt:  KDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAACCACGCTTCTGTGAACCACTCTGAACGATTCTGCATGGTCGACGACCTCGAACGTCCATCGTCGATGCTACCGGCAACCTTCGTTGGGGTTGGGGCGCTTCA
CAGCAAGGATAAAGCAAATCCATTGGCAACAGTTCTCAGTGCTGCTATGCTTCTAAAGTATGGCCTCGGTGAAGAAAATGCTGCCACAAGAATTGAGGCTGTAGTTTTGG
ATACACTAGACAGAGGATTTAGAATTGATGACATATACTTGGCTGGATGTGCAAAGGAGGATGGGCTATCTTCTATGAACCTTAAGAAAGAAGAGAAGTGGATTCCCTTA
TTAGGGATACGATTGATAAGATTTGACGCACAAATGGACTTCAGATGA
mRNA sequenceShow/hide mRNA sequence
TAATAATGTCACTAAAGATTAAATAGTTTTAGCAACAAAAATACATGTTGGTACAAGTTGATCAAAATTTTCCCATTTTCATTACCCCCACCTTTTCATTAAAAAAATTT
TAATTAAGAAACTCTTTCCCTCTACCCATTACCCAACCCGGAAATCGCACCAAGCCCTAAAAACATCTCCATCTCTACCTCCTCCTCTCCTTCACCGGCGAACCACGCTT
CTGCATGAACCACCAACTGAAGAACGGGCGATGGCGAACCACGCTTCTGTGAACCACTCTGAACGATTCTGCATGGTCGACGACCTCGAACGTCCATCGTCGATGCTACC
GGCAACCTTCGTTGGGGTTGGGGCGCTTCACAGCAAGGATAAAGCAAATCCATTGGCAACAGTTCTCAGTGCTGCTATGCTTCTAAAGTATGGCCTCGGTGAAGAAAATG
CTGCCACAAGAATTGAGGCTGTAGTTTTGGATACACTAGACAGAGGATTTAGAATTGATGACATATACTTGGCTGGATGTGCAAAGGAGGATGGGCTATCTTCTATGAAC
CTTAAGAAAGAAGAGAAGTGGATTCCCTTATTAGGGATACGATTGATAAGATTTGACGCACAAATGGACTTCAGATGAATATAAAAAGAGTTTTTGATTTGTATCTTATA
ATTTTTTGTTATGCACATACTTTTGGTCCAAGACTTGTAGGAATTTTTTGATGTGCACAATACTTTTGGTTTCTAGGTGTAACTTTTTGATGTAACTTCATGGTTATAAC
TTGGAACTAACTTTCGATATCCATTTACTAGATGTAACTTCGTACTTATAACTTAGGTTGAAATTGCTTGAACTATTTATGAAGATATTGAAGTTTCTTGACC
Protein sequenceShow/hide protein sequence
MANHASVNHSERFCMVDDLERPSSMLPATFVGVGALHSKDKANPLATVLSAAMLLKYGLGEENAATRIEAVVLDTLDRGFRIDDIYLAGCAKEDGLSSMNLKKEEKWIPL
LGIRLIRFDAQMDFR