CuGenDBv2

Gene ID	Pay0010814
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	RRM domain-containing protein
Genome location	chr03:4101135..4106243
RNA-Seq Expression	Pay0010814
Synteny	Pay0010814
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6592987.1 hypothetical protein SDJN03_12463, partial [Cucurbita argyrosperma subsp. sororia]

3.3e-88

83.92

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Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        MGSA DEQ++ FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPN+TEPINSSQCALVEMKDSKEA SVI+VIAQFPFMMSGMPRPVRA PAE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
         EMFDDRP+KPGRKISF WL  DDPDFEVA+++K LT++HVAEAAFLLKQ L EEEKLAKQQQ+ L+ NYKKYEIV+ VM DGTARRLA+ YNMRV+DD
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD

KAG7025396.1 hypothetical protein SDJN02_11891, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.3e-88

83.92

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Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        MGSA DEQ++ FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPN+TEPINSSQCALVEMKDSKEA SVI+VIAQFPFMMSGMPRPVRA PAE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
         EMFDDRP+KPGRKISF WL  DDPDFEVA+++K LT++HVAEAAFLLKQ L EEEKLAKQQQ+ L+ NYKKYEIV+ VM DGTARRLA+ YNMRV+DD
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD

XP_004138411.1 uncharacterized protein LOC101221287 [Cucumis sativus]

3.2e-99

93.97

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Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        MGS KDEQF+MFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVV+VHFIPNYTEPINSSQCALVEMKDSKEAKSVI VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
         EMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRL+KKHVAEAAFL+KQH+AEEEKLAKQQQETL+GNYKKYEIVDSVMADGTARRLAK+YNMR+SDD
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD

XP_008441485.1 PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo]

6.6e-105

100

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Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
        AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD

XP_038886330.1 uncharacterized protein LOC120076542 [Benincasa hispida]

8.1e-95

89.95

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Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        MGS KDEQF+MFEEKVKRTVYVDNLSP VTEPVLRTALDQFGTVV+VHFIPNYTEPIN+SQCALVEMKD KEAKSVI+VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
         EMFDDRPVKPGRKISF WLE DDPDFEVA+++K LT+KHVAEAAFLLK HLAEEEKLAKQQQE L+GNYKKYEIV+SVMADGTARRLAK YNMRVSDD
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAE7 RRM domain-containing protein

1.5e-99

93.97

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Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        MGS KDEQF+MFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVV+VHFIPNYTEPINSSQCALVEMKDSKEAKSVI VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
         EMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRL+KKHVAEAAFL+KQH+AEEEKLAKQQQETL+GNYKKYEIVDSVMADGTARRLAK+YNMR+SDD
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD

A0A1S3B3J3 uncharacterized protein LOC103485592

3.2e-105

100

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Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
        AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD

A0A6J1DB90 uncharacterized protein LOC111018537

1.1e-84

80.4

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Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        MGSA +EQF+ FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPNY EP+NSSQCALVEMKD KEAKSVI+VIA+FPFM+SGMPRPVRARPAE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
         EMFDDRP+KPG KISF WL+ +DPDF+VA+++K  T+KH AE AFLLKQ L EEEKLAKQQQE L+GNYKK+EIV+SVM DGTARRLAK Y+MRV DD
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD

A0A6J1H6P8 uncharacterized protein LOC111460615

7.9e-88

83.42

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Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        MGSA DEQ+  FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPN+TEPINSSQCALVEMKDSKEA SVI++IAQFPFMMSGMPRPVRA PAE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
         EMFDDRP+KPGRKISF WL  DDPDFEVA+++K LT++HVAEAAFLLKQ L EEEKLAKQQQ+ L+ NYKKYEIV+ VM DGTARRLA+ YNMRV+DD
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD

A0A6J1KVQ1 uncharacterized protein LOC111498019

4.6e-88

82.91

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Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        MGSA DEQ++ FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPN+TEPINSSQCALVEMKDSKEA SVI+VI+QFPFMMSGMPRPVRA PAE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD
         EMFDDRP+KPGRKISF WL  +DPDFEVA+++K LT++HVAEAAFLLKQ L EEEKLAKQQQ+ L+GNYKKYEI++ VM DGTARRLA+ YNMRV+DD
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G05970.1 RNA-binding (RRM/RBD/RNP motifs) family protein

3.2e-49

48.72

Show/hide

Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        M + ++  +  F E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPNY  P       LVEM++ +  ++VI+ ++Q PFM++GMPRPVRA  AE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMR
          MF D+P KPGR + FRW++ +DPDF+ AR++KRL +KH AE +F+LK  L E EKL+KQQ ET   ++KK+E++D ++ DG A++LA  Y+++
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMR

AT1G05970.2 RNA-binding (RRM/RBD/RNP motifs) family protein

9.9e-51

48.72

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Query:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE
        M + ++  +  F E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPNY  P       LVEM++ +  ++VI+ ++Q PFM++GMPRPVRA  AE
Subjt:  MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAE

Query:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMR
          MF D+P KPGR + FRW++ +DPDF+ AR++KRL +KH AE +F+LK+ L E EKL+KQQ ET   ++KK+E++D ++ DG A++LA  Y+++
Subjt:  AEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMR

Sequences

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CDS sequence

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ATGGCCGTATTAGATCTCTTATTAGAGATGGGATCGGCGAAGGATGAGCAATTTTCCATGTTTGAGGAGAAGGTAAAACGGACTGTGTATGTTGATAATCTCTCTCCTCA
AGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTGGTCAATGTCCATTTTATTCCAAATTACACGGAGCCAATTAATAGCTCTCAATGTGCTCTAG
TGGAGATGAAGGATTCGAAGGAGGCGAAATCTGTGATCGCCGTTATAGCTCAATTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGCA
GAAATGTTTGATGATCGTCCTGTAAAGCCTGGTAGGAAGATTAGCTTTAGATGGCTGGAAAGTGATGATCCTGATTTTGAAGTGGCCAGACAAATCAAGCGTCTTACGAA
GAAACATGTGGCTGAAGCTGCATTTTTGCTCAAGCAACATTTGGCGGAAGAGGAAAAGCTTGCAAAGCAGCAACAAGAAACGCTGAGAGGAAACTACAAGAAATATGAGA
TTGTAGATAGTGTAATGGCCGATGGAACTGCCCGCAGGTTAGCAAAAAATTATAATATGCGAGTTTCAGATGATTAA

mRNA sequence

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TTTAGAAGTTAGAAAACAGAAAACCCTAAATAACGTTTCCCTTTTCCACGATTTTTCTCTCTCGTCCTCCCCGATTCTGCTCTCCCTTCACCGCCAATTTCGAAGTTTTC
AGCGTCGATCACCCCTTTCTCCGCCGCTGTCATAGTTGTTCGATCTCCCTCCGTCAGTGAAGATGCGCATAATCTAGGCCAGAAACTCACGGATACCAAAATGATCTGAA
TGCTTGTTTGTTCTTCATGGTGAATTTTTTTCTCTTTTGTTGTGTCTTGTAGTTCTTAATCTTATTTTACAGTATGAACAATTAGGCTAACTCCTTTAATGGCCGTATTA
GATCTCTTATTAGAGATGGGATCGGCGAAGGATGAGCAATTTTCCATGTTTGAGGAGAAGGTAAAACGGACTGTGTATGTTGATAATCTCTCTCCTCAAGTAACTGAGCC
TGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTGGTCAATGTCCATTTTATTCCAAATTACACGGAGCCAATTAATAGCTCTCAATGTGCTCTAGTGGAGATGAAGG
ATTCGAAGGAGGCGAAATCTGTGATCGCCGTTATAGCTCAATTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGCAGAAATGTTTGAT
GATCGTCCTGTAAAGCCTGGTAGGAAGATTAGCTTTAGATGGCTGGAAAGTGATGATCCTGATTTTGAAGTGGCCAGACAAATCAAGCGTCTTACGAAGAAACATGTGGC
TGAAGCTGCATTTTTGCTCAAGCAACATTTGGCGGAAGAGGAAAAGCTTGCAAAGCAGCAACAAGAAACGCTGAGAGGAAACTACAAGAAATATGAGATTGTAGATAGTG
TAATGGCCGATGGAACTGCCCGCAGGTTAGCAAAAAATTATAATATGCGAGTTTCAGATGATTAATGCCTTTGAAGCCTTGCTTTTGTAACCTCTTAATGCCACTGATTT
TTACCTGTAAATTTGTACAAATTGTCATTTATATGGCTGAATAGAGATGAATTAGAGACTTCTTTTGTGATTTAGATTTTAGAGGGAGAAAAACAAATATTTAGTATAAT
ACTCCTAACAACACTCTTGGCATTTGTTTTAAAAGAAAAACATTGTATTTTCCCCATCTTTCAGGCGTTCATTTTAGGATTTCATCACTGATGTTGACAAAAAGCCTAGT
AAAATCATCCCAAATGGAGAGAGGAATCAACCAAGGCTTGAAGTTATGGATCAAGTGTTGTCAGTTGAGGATGTAAGAGTTGGACACGAACGGATGAAACAATAAAATTG
TGGCATCTCAGCTTGTTCACATTAGC

Protein sequence

Show/hide protein sequence

MAVLDLLLEMGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEA
EMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD

Pay0010814 (gene) of Melon (Payzawat) v1 genome