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Pay0010950 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0010950
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionPol protein
Genome locationchr05:26100100..26100489
RNA-Seq ExpressionPay0010950
SyntenyPay0010950
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR016197 - Chromo-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047631.1 pol protein [Cucumis melo var. makuwa]4.7e-4779.84Show/hide
Query:  MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHV----------NLSYEEQPVEILAREVKMLR
        MVFLKVAPM+ VLRFK+KGKLSPRFVG FEIL+RI PVAYRLAL P+F  VHDVFHVSMLRKYVADP HV          NLSYEE+PVEILAREVKMLR
Subjt:  MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHV----------NLSYEEQPVEILAREVKMLR

Query:  NRRIALVKVLWRNHGAEKATWEREDDMRA
        NR IALVKVLWRNHG  +ATWEREDDMRA
Subjt:  NRRIALVKVLWRNHGAEKATWEREDDMRA

KAA0054128.1 pol protein [Cucumis melo var. makuwa]2.3e-4679.84Show/hide
Query:  MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHV----------NLSYEEQPVEILAREVKMLR
        MVFLKVAPM+GVLRF++KGKLSPRFVG FEILKRI PVAY LAL  +F  VHDVFHVSMLRKYVADP HV          NLSYEEQPVEILAREVK+LR
Subjt:  MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHV----------NLSYEEQPVEILAREVKMLR

Query:  NRRIALVKVLWRNHGAEKATWEREDDMRA
        NR IALVKVLWRNHG E+ATWEREDDMRA
Subjt:  NRRIALVKVLWRNHGAEKATWEREDDMRA

TYK04678.1 pol protein [Cucumis melo var. makuwa]6.1e-4777.52Show/hide
Query:  MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHV----------NLSYEEQPVEILAREVKMLR
        MVFLKVAPM+GVLRF++KGKLSPRFVG FEIL+RI PVAYRLAL PSFF VHDVFHVSM+R+YVADP HV          NLSYEEQPVEILAREVK LR
Subjt:  MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHV----------NLSYEEQPVEILAREVKMLR

Query:  NRRIALVKVLWRNHGAEKATWEREDDMRA
        +R I+LVKV+WRNHG E+ATWERE+DMRA
Subjt:  NRRIALVKVLWRNHGAEKATWEREDDMRA

TYK29789.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-4678.29Show/hide
Query:  MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHV----------NLSYEEQPVEILAREVKMLR
        MVFLKVAPM+G LRF++KGKLSPRFVG FEIL+RI PVAYRLAL PSF  VHDVFHVSMLR+YVADP HV          +LSYEEQPVEILAREVKMLR
Subjt:  MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHV----------NLSYEEQPVEILAREVKMLR

Query:  NRRIALVKVLWRNHGAEKATWEREDDMRA
        NR I+LVKVLWRNHG E+ATWERE+DMRA
Subjt:  NRRIALVKVLWRNHGAEKATWEREDDMRA

XP_016901428.1 PREDICTED: uncharacterized protein LOC107991252 [Cucumis melo]8.8e-5489.15Show/hide
Query:  MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHV----------NLSYEEQPVEILAREVKMLR
        MVFLKV PMRGVLRFKRKGKLSPRFVG FEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHV          NLSYEEQPVEILAREVKMLR
Subjt:  MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHV----------NLSYEEQPVEILAREVKMLR

Query:  NRRIALVKVLWRNHGAEKATWEREDDMRA
        NRRIALVK  WRNHGAEKATWEREDDMRA
Subjt:  NRRIALVKVLWRNHGAEKATWEREDDMRA

TrEMBL top hitse value%identityAlignment
A0A1S4DZM1 uncharacterized protein LOC1079912524.3e-5489.15Show/hide
Query:  MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHV----------NLSYEEQPVEILAREVKMLR
        MVFLKV PMRGVLRFKRKGKLSPRFVG FEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHV          NLSYEEQPVEILAREVKMLR
Subjt:  MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHV----------NLSYEEQPVEILAREVKMLR

Query:  NRRIALVKVLWRNHGAEKATWEREDDMRA
        NRRIALVK  WRNHGAEKATWEREDDMRA
Subjt:  NRRIALVKVLWRNHGAEKATWEREDDMRA

A0A5A7U220 Pol protein2.3e-4779.84Show/hide
Query:  MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHV----------NLSYEEQPVEILAREVKMLR
        MVFLKVAPM+ VLRFK+KGKLSPRFVG FEIL+RI PVAYRLAL P+F  VHDVFHVSMLRKYVADP HV          NLSYEE+PVEILAREVKMLR
Subjt:  MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHV----------NLSYEEQPVEILAREVKMLR

Query:  NRRIALVKVLWRNHGAEKATWEREDDMRA
        NR IALVKVLWRNHG  +ATWEREDDMRA
Subjt:  NRRIALVKVLWRNHGAEKATWEREDDMRA

A0A5A7UPS2 Pol protein4.3e-5489.15Show/hide
Query:  MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHV----------NLSYEEQPVEILAREVKMLR
        MVFLKV PMRGVLRFKRKGKLSPRFVG FEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHV          NLSYEEQPVEILAREVKMLR
Subjt:  MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHV----------NLSYEEQPVEILAREVKMLR

Query:  NRRIALVKVLWRNHGAEKATWEREDDMRA
        NRRIALVK  WRNHGAEKATWEREDDMRA
Subjt:  NRRIALVKVLWRNHGAEKATWEREDDMRA

A0A5D3C081 Pol protein3.0e-4777.52Show/hide
Query:  MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHV----------NLSYEEQPVEILAREVKMLR
        MVFLKVAPM+GVLRF++KGKLSPRFVG FEIL+RI PVAYRLAL PSFF VHDVFHVSM+R+YVADP HV          NLSYEEQPVEILAREVK LR
Subjt:  MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHV----------NLSYEEQPVEILAREVKMLR

Query:  NRRIALVKVLWRNHGAEKATWEREDDMRA
        +R I+LVKV+WRNHG E+ATWERE+DMRA
Subjt:  NRRIALVKVLWRNHGAEKATWEREDDMRA

A0A5D3E202 Ty3-gypsy retrotransposon protein6.6e-4778.29Show/hide
Query:  MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHV----------NLSYEEQPVEILAREVKMLR
        MVFLKVAPM+G LRF++KGKLSPRFVG FEIL+RI PVAYRLAL PSF  VHDVFHVSMLR+YVADP HV          +LSYEEQPVEILAREVKMLR
Subjt:  MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHV----------NLSYEEQPVEILAREVKMLR

Query:  NRRIALVKVLWRNHGAEKATWEREDDMRA
        NR I+LVKVLWRNHG E+ATWERE+DMRA
Subjt:  NRRIALVKVLWRNHGAEKATWEREDDMRA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTCTAAAGGTAGCACCTATGAGGGGTGTCTTAAGGTTCAAAAGAAAAGGGAAGCTAAGTCCACGTTTTGTAGGACTATTTGAGATACTTAAGCGAATTAGCCC
CGTAGCTTATCGTTTGGCGTTGTCTCCATCGTTTTTTGTAGTTCATGATGTGTTTCACGTTTCAATGCTGAGGAAGTATGTAGCAGACCCGATGCATGTAAACTTGAGTT
ATGAGGAGCAACCCGTTGAGATTTTGGCAAGAGAGGTCAAGATGCTTCGTAATAGACGAATTGCACTAGTTAAAGTTCTTTGGCGGAACCACGGAGCTGAAAAGGCCACA
TGGGAGAGAGAGGACGACATGAGAGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTCTAAAGGTAGCACCTATGAGGGGTGTCTTAAGGTTCAAAAGAAAAGGGAAGCTAAGTCCACGTTTTGTAGGACTATTTGAGATACTTAAGCGAATTAGCCC
CGTAGCTTATCGTTTGGCGTTGTCTCCATCGTTTTTTGTAGTTCATGATGTGTTTCACGTTTCAATGCTGAGGAAGTATGTAGCAGACCCGATGCATGTAAACTTGAGTT
ATGAGGAGCAACCCGTTGAGATTTTGGCAAGAGAGGTCAAGATGCTTCGTAATAGACGAATTGCACTAGTTAAAGTTCTTTGGCGGAACCACGGAGCTGAAAAGGCCACA
TGGGAGAGAGAGGACGACATGAGAGCCTAG
Protein sequenceShow/hide protein sequence
MVFLKVAPMRGVLRFKRKGKLSPRFVGLFEILKRISPVAYRLALSPSFFVVHDVFHVSMLRKYVADPMHVNLSYEEQPVEILAREVKMLRNRRIALVKVLWRNHGAEKAT
WEREDDMRA