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Pay0010973 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0010973
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionDNA-directed RNA polymerases II, IV and V subunit 11-like
Genome locationchr01:33307650..33309969
RNA-Seq ExpressionPay0010973
SyntenyPay0010973
Gene Ontology termsGO:0006366 - transcription by RNA polymerase II (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0001055 - RNA polymerase II activity (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR008193 - DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain
IPR036603 - RNA polymerase, RBP11-like subunit
IPR037685 - RNA polymerase RBP11


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135939.1 DNA-directed RNA polymerases II, IV and V subunit 11 isoform X3 [Cucumis sativus]5.6e-5170.99Show/hide
Query:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD
        MNVPDRYERFVVPEGAKK                                              VSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD
Subjt:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD

Query:  NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY
        NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELE EISRFSRAY
Subjt:  NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY

XP_008461312.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo]1.9e-5171.6Show/hide
Query:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD
        MNVPDRYERFVVPEGAKK                                              VSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD
Subjt:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD

Query:  NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY
        NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY
Subjt:  NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY

XP_031744367.1 DNA-directed RNA polymerases II, IV and V subunit 11 isoform X1 [Cucumis sativus]3.1e-7895.06Show/hide
Query:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD
        MNVPDRYERFVVPEGAKKLILETL LFIIS TSR ILLFFYIHY  L YDFLFWT+VDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD
Subjt:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD

Query:  NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY
        NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELE EISRFSRAY
Subjt:  NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY

XP_031744368.1 DNA-directed RNA polymerases II, IV and V subunit 11 isoform X2 [Cucumis sativus]4.9e-5593.39Show/hide
Query:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD
        MNVPDRYERFVVPEGAKKLILETL LFIIS TSR ILLFFYIHY  L YDFLFWT+VDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD
Subjt:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD

Query:  NVLFAGYQLPHPLKYRILVRI
        NVLFAGYQLPHPLKYRILVR+
Subjt:  NVLFAGYQLPHPLKYRILVRI

XP_038899336.1 DNA-directed RNA polymerases II, IV and V subunit 11-like [Benincasa hispida]1.0e-4969.75Show/hide
Query:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD
        MNVPDRYERFVVPEGAKK                                              VSYERDTKIMNAATFILEREDHTIG+ILRMQLHRDD
Subjt:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD

Query:  NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY
        NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELE EISRFSR Y
Subjt:  NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY

TrEMBL top hitse value%identityAlignment
A0A0A0K9R2 RNA_pol_L_2 domain-containing protein1.5e-7895.06Show/hide
Query:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD
        MNVPDRYERFVVPEGAKKLILETL LFIIS TSR ILLFFYIHY  L YDFLFWT+VDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD
Subjt:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD

Query:  NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY
        NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELE EISRFSRAY
Subjt:  NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY

A0A1S3CFN3 DNA-directed RNA polymerases II, IV and V subunit 11-like9.3e-5271.6Show/hide
Query:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD
        MNVPDRYERFVVPEGAKK                                              VSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD
Subjt:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD

Query:  NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY
        NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY
Subjt:  NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY

A0A6J1DA06 DNA-directed RNA polymerases II, IV and V subunit 11-like1.3e-4866.67Show/hide
Query:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD
        MNVPDRYERFVVPEGAKK                                              VSYERDTKIMNAATFILEREDHT+GNILRMQLHRDD
Subjt:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD

Query:  NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY
        NVLFA YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD LK+ELESE+SRFSRAY
Subjt:  NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY

A0A6J1H8G6 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X12.1e-4867.28Show/hide
Query:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD
        MNVPDRYERFVVPEGAKK                                              VSYERDTKIMNAATFI+EREDHTIGNI+RMQLHRDD
Subjt:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD

Query:  NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY
        NVLFA YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELE   SRFSR Y
Subjt:  NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY

A0A6J1KX24 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X11.6e-4867.28Show/hide
Query:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD
        MNVPDRYERFVVPEGAKK                                              VSYERDTKIMNAATFI+EREDHTIGNI+RMQLHRDD
Subjt:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD

Query:  NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY
        NVLFA YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELE   SRFSR+Y
Subjt:  NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY

SwissProt top hitse value%identityAlignment
P52435 DNA-directed RNA polymerase II subunit RPB11-a2.0e-1947.06Show/hide
Query:  RVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLK
        +++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFAGY++PHPL+++I++R+QT    SP +A+  AI DL  EL +L+
Subjt:  RVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLK

Q32P79 DNA-directed RNA polymerase II subunit RPB112.0e-1947.06Show/hide
Query:  RVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLK
        +++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFAGY++PHPL+++I++R+QT    SP +A+  AI DL  EL +L+
Subjt:  RVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLK

Q38859 DNA-directed RNA polymerases II, IV and V subunit 114.4e-4356.17Show/hide
Query:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD
        MN P+RYERFVVPEG KK                                              VSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+
Subjt:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD

Query:  NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY
        NVLFAGYQLPHPLKY+I+VRI T SQSSPMQAYNQAINDLDKELD LK + E+E+++FS  +
Subjt:  NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY

Q60SM4 Probable DNA-directed RNA polymerase II subunit RPB111.4e-2044.9Show/hide
Query:  RVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRA
        ++  E+DTK+ NAA F + +EDHT+GN+L++QL +D  VLFAGY+ PHPL+++IL+R+QT + ++P  A   AI DL  EL +L++ ++S I + +++
Subjt:  RVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRA

Q9XVH6 Probable DNA-directed RNA polymerase II subunit RPB116.9e-2046.81Show/hide
Query:  ERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRA
        E+DTK+ NAA F + +EDHT+GN+L++QL +D  VLFAGY+ PHPL+++IL+RIQT + ++P  A   AI DL  EL +L++ +++ I + +++
Subjt:  ERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRA

Arabidopsis top hitse value%identityAlignment
AT3G52090.1 DNA-directed RNA polymerase, RBP11-like3.2e-4456.17Show/hide
Query:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD
        MN P+RYERFVVPEG KK                                              VSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+
Subjt:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD

Query:  NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY
        NVLFAGYQLPHPLKY+I+VRI T SQSSPMQAYNQAINDLDKELD LK + E+E+++FS  +
Subjt:  NVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY

AT3G52090.2 DNA-directed RNA polymerase, RBP11-like1.8e-3947.4Show/hide
Query:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD
        MN P+RYERFVVPEG KK                                              VSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+
Subjt:  MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDD

Query:  NVLFAGYQLPHPLKYRILVR------------------------------IQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY
        NVLFAGYQLPHPLKY+I+VR                              I T SQSSPMQAYNQAINDLDKELD LK + E+E+++FS  +
Subjt:  NVLFAGYQLPHPLKYRILVR------------------------------IQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGTCCCTGATCGCTACGAGCGCTTCGTCGTCCCGGAGGGCGCGAAGAAGTTAATTCTTGAAACCCTATTTCTTTTCATCATCTCTTTCACTTCACGACTGATTTT
GCTTTTTTTCTACATACACTACTACCATCTCCGTTATGATTTCCTTTTCTGGACGAACGTCGATTTTGTTGAACATTGCAGGGTTTCATACGAGAGAGACACGAAGATCA
TGAATGCGGCAACATTTATATTAGAGAGAGAGGATCATACTATCGGAAACATTCTCCGCATGCAACTTCATAGAGATGATAATGTGCTTTTTGCTGGCTACCAGCTTCCT
CATCCTCTTAAGTACAGAATACTTGTTCGGATACAAACTGCTAGCCAGTCTTCACCGATGCAGGCATATAATCAGGCTATCAATGATTTGGATAAGGAGCTCGACGTTTT
GAAATACGAGCTTGAGAGTGAGATTTCGAGGTTCTCGAGGGCCTATTAA
mRNA sequenceShow/hide mRNA sequence
GAAAAACGATGAATGTCCCTGATCGCTACGAGCGCTTCGTCGTCCCGGAGGGCGCGAAGAAGTTAATTCTTGAAACCCTATTTCTTTTCATCATCTCTTTCACTTCACGA
CTGATTTTGCTTTTTTTCTACATACACTACTACCATCTCCGTTATGATTTCCTTTTCTGGACGAACGTCGATTTTGTTGAACATTGCAGGGTTTCATACGAGAGAGACAC
GAAGATCATGAATGCGGCAACATTTATATTAGAGAGAGAGGATCATACTATCGGAAACATTCTCCGCATGCAACTTCATAGAGATGATAATGTGCTTTTTGCTGGCTACC
AGCTTCCTCATCCTCTTAAGTACAGAATACTTGTTCGGATACAAACTGCTAGCCAGTCTTCACCGATGCAGGCATATAATCAGGCTATCAATGATTTGGATAAGGAGCTC
GACGTTTTGAAATACGAGCTTGAGAGTGAGATTTCGAGGTTCTCGAGGGCCTATTAATTTCCCATCCAAGAAAACCAAGGGAAAGTTTGAATTCAATAACGACGAGTTGG
GAATGGAATGCCAATAATCAAATTTACGACCACTTTTTAGTCTGCTTCCTTTTGGCGGTGGGGTGGGAGTTCGCTGTATTCTTTCTTTTAAATGGAAGTTCAAATTTTCA
TCCAAAAAAGAGAAACCATTTTAGTTCAGTATTGATTTGAAATAAATATTTTGAACTGTGTATTCCATTTCAATAATACTTCACGAG
Protein sequenceShow/hide protein sequence
MNVPDRYERFVVPEGAKKLILETLFLFIISFTSRLILLFFYIHYYHLRYDFLFWTNVDFVEHCRVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLP
HPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY