CuGenDBv2

Gene ID	Pay0011199
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Integrase
Genome location	chr06:23752671..23753402
RNA-Seq Expression	Pay0011199
Synteny	Pay0011199
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0053129.1 integrase [Cucumis melo var. makuwa]

5.6e-66

97.71

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Query:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQRGLKVSFEGDICAIKDQADVLIAKI
        IGQLLQRGLKVSFEGDICAIKDQ  VLIAK+
Subjt:  IGQLLQRGLKVSFEGDICAIKDQADVLIAKI

KAA0055928.1 integrase [Cucumis melo var. makuwa]

1.2e-65

96.95

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Query:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNR+IFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQRGLKVSFEGDICAIKDQADVLIAKI
        IGQLLQ+GLKVSFEGDICAIKDQA VLIAK+
Subjt:  IGQLLQRGLKVSFEGDICAIKDQADVLIAKI

TYK15348.1 integrase [Cucumis melo var. makuwa]

1.5e-66

99.24

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Query:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQRGLKVSFEGDICAIKDQADVLIAKI
        IGQLLQRGLKVSFEGDICAIKDQA VLIAKI
Subjt:  IGQLLQRGLKVSFEGDICAIKDQADVLIAKI

TYK28133.1 integrase [Cucumis melo var. makuwa]

1.2e-65

96.95

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Query:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNR+IFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQRGLKVSFEGDICAIKDQADVLIAKI
        IGQLLQ+GLKVSFEGDICAIKDQA VLIAK+
Subjt:  IGQLLQRGLKVSFEGDICAIKDQADVLIAKI

XP_008462674.1 PREDICTED: uncharacterized protein LOC103500978 [Cucumis melo]

1.5e-71

95.92

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Query:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKNDEGILFLACSVQDNV+EPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNT LQVKGQ DILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQRGLKVSFEGDICAIKDQADVLIAKICVVLCEQQQMEVIDIS
        IGQLLQRGLKVSFEGDICAIKDQ  VLIAKI VVLCEQQQMEVIDIS
Subjt:  IGQLLQRGLKVSFEGDICAIKDQADVLIAKICVVLCEQQQMEVIDIS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CI07 uncharacterized protein LOC103500978

7.3e-72

95.92

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Query:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKNDEGILFLACSVQDNV+EPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNT LQVKGQ DILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQRGLKVSFEGDICAIKDQADVLIAKICVVLCEQQQMEVIDIS
        IGQLLQRGLKVSFEGDICAIKDQ  VLIAKI VVLCEQQQMEVIDIS
Subjt:  IGQLLQRGLKVSFEGDICAIKDQADVLIAKICVVLCEQQQMEVIDIS

A0A5A7UI36 Integrase

2.7e-66

97.71

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Query:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQRGLKVSFEGDICAIKDQADVLIAKI
        IGQLLQRGLKVSFEGDICAIKDQ  VLIAK+
Subjt:  IGQLLQRGLKVSFEGDICAIKDQADVLIAKI

A0A5A7ULH0 Integrase

6.0e-66

96.95

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Query:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNR+IFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQRGLKVSFEGDICAIKDQADVLIAKI
        IGQLLQ+GLKVSFEGDICAIKDQA VLIAK+
Subjt:  IGQLLQRGLKVSFEGDICAIKDQADVLIAKI

A0A5D3CVS4 Integrase

7.1e-67

99.24

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Query:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQRGLKVSFEGDICAIKDQADVLIAKI
        IGQLLQRGLKVSFEGDICAIKDQA VLIAKI
Subjt:  IGQLLQRGLKVSFEGDICAIKDQADVLIAKI

A0A5D3DWR8 Integrase

6.0e-66

96.95

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Query:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
        MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNR+IFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS
Subjt:  MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLS

Query:  IGQLLQRGLKVSFEGDICAIKDQADVLIAKI
        IGQLLQ+GLKVSFEGDICAIKDQA VLIAK+
Subjt:  IGQLLQRGLKVSFEGDICAIKDQADVLIAKI

SwissProt top hits

e value

%identity

Alignment

P25601 Putative transposon Ty5-1 protein YCL075W

9.7e-05

33.33

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Query:  WYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSI
        W  D+GC++HM  +RSIF +   S + +   G    + + G G + +    GT ++ +V YVP L  NL+S+
Subjt:  WYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSI

Arabidopsis top hits

e value

%identity

Alignment

AT3G20980.1 Gag-Pol-related retrotransposon family protein

9.9e-13

43.01

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Query:  EPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVK--TGD---NTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFE
        E  W + S  SNHMT +   F TLD S + +VK  +GD    T   V+G GD+   T +G K + NV YVPG++ N LS+ QL + G +VS E
Subjt:  EPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVK--TGD---NTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLKVSFE

AT3G21000.1 Gag-Pol-related retrotransposon family protein

2.4e-11

30.47

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Query:  EQKKNDEGILFLACSVQDNVVEPT-----WYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKR-VTNVFYVPGLKHNLL
        +++K DE ++        N+   T     W +      +MT     F TLD +F++ V T D T L V+G+GD+ ++ K+G K+ + NV +VPGL  N+L
Subjt:  EQKKNDEGILFLACSVQDNVVEPT-----WYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKR-VTNVFYVPGLKHNLL

Query:  SIGQLLQRGLKVS--FEGDICAIKDQAD
        S G+++ +   +S   +G+ C + D+ +
Subjt:  SIGQLLQRGLKVS--FEGDICAIKDQAD

Sequences

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CDS sequence

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ATGAATATGCATAAAGAACAAAAGAAAAATGATGAAGGCATTCTATTCCTCGCATGTAGTGTTCAAGACAATGTTGTAGAGCCTACATGGTATCTTGATAGTGGTTGTAG
TAACCACATGACAGGAAATAGAAGTATATTTGTTACTTTGGATGAATCTTTCCAAAGTGAAGTGAAGACTGGTGATAATACCAGACTACAAGTCAAAGGCCAAGGTGATA
TTCTTGTGAAGACAAAGAAAGGGACAAAACGAGTTACAAATGTGTTCTATGTTCCAGGTCTAAAGCATAATCTTTTGAGTATTGGCCAACTGCTTCAACGAGGTTTAAAA
GTTTCATTTGAAGGTGACATATGTGCAATCAAAGATCAGGCCGATGTTCTTATTGCCAAGATTTGTGTGGTCCTATGCGAACAACAACAAATGGAGGTAATCGATATTTC
ATAA

mRNA sequence

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Protein sequence

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MNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNHMTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDILVKTKKGTKRVTNVFYVPGLKHNLLSIGQLLQRGLK
VSFEGDICAIKDQADVLIAKICVVLCEQQQMEVIDIS

Pay0011199 (gene) of Melon (Payzawat) v1 genome