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Pay0011301 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0011301
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Descriptiontransformer-2 protein homolog alpha-like
Genome locationchr10:1138904..1139533
RNA-Seq ExpressionPay0011301
SyntenyPay0011301
Gene Ontology termsGO:0036297 - interstrand cross-link repair (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0004528 - phosphodiesterase I activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0008409 - 5'-3' exonuclease activity (molecular function)
GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
GO:0070336 - flap-structured DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN52185.1 hypothetical protein Csa_009431 [Cucumis sativus]3.9e-3078.07Show/hide
Query:  RRRTEIALILILIYSSMV-HSFAFKQLFVTDSIKHQESEHMEK-HGRRYNIEGRHGYTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIA
        RRRTE ALILILIYSSM+  SFAFKQL +TD+ KHQESEHMEK +GRRYNIEGRHGYT+GIP H I IT   GRGG G    GGNGA GIHD+N MKFIA
Subjt:  RRRTEIALILILIYSSMV-HSFAFKQLFVTDSIKHQESEHMEK-HGRRYNIEGRHGYTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIA

Query:  AAVSISVAYLCGLI
        AAVSISVAYLCGLI
Subjt:  AAVSISVAYLCGLI

KGN52711.2 hypothetical protein Csa_008218, partial [Cucumis sativus]2.9e-3377.97Show/hide
Query:  MGRRRRRTEIALILILIYSSMV-HSFAFKQLFVTDSIKHQESEHMEK-HGRRYNIEGRHGYTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYM
        MGRR+    IALILILIYSSM+  S AFKQLF+TD+  HQESEHMEK +GRRYN+EGRHGYTNGIP H I ITRGGGRGGGGGGR  GNGA GIHD+N M
Subjt:  MGRRRRRTEIALILILIYSSMV-HSFAFKQLFVTDSIKHQESEHMEK-HGRRYNIEGRHGYTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYM

Query:  KFIAAAVSISVAYLCGLI
        + IAAAVSISVAYLCGLI
Subjt:  KFIAAAVSISVAYLCGLI

XP_008446753.1 PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo]1.3e-54100Show/hide
Query:  MGRRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKF
        MGRRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKF
Subjt:  MGRRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKF

Query:  IAAAVSISVAYLCGLI
        IAAAVSISVAYLCGLI
Subjt:  IAAAVSISVAYLCGLI

XP_022987217.1 glycine-rich protein DOT1-like [Cucurbita maxima]7.6e-1058.7Show/hide
Query:  RRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYTNG--IPIHDITITRGGGRGGGGGGRGG-GNGAGG
        RRRRR E+ALIL+L++SSMV SFAFKQLF TD  + QESEH EK+G+           NG  IP+H I I  GGG G GGGGRGG G G+ G
Subjt:  RRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYTNG--IPIHDITITRGGGRGGGGGGRGG-GNGAGG

XP_023550250.1 glycine-rich RNA-binding protein 2-like [Cucurbita pepo subsp. pepo]4.2e-0841.78Show/hide
Query:  IALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYTNGIPIHDITITR-------------GGGRGGGGGGRGGG----------
        +ALIL+L+ SSMV SFAFKQLF TD  + QESEH EK+G+           NG+ I    ++R             GGGRGGGGGG  GG          
Subjt:  IALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYTNGIPIHDITITR-------------GGGRGGGGGGRGGG----------

Query:  ----------NGAGGIHD------RNYMKFIAAAVSISVAYLCGLI
                   G GG H       +N M+FI A VS SVAYL  LI
Subjt:  ----------NGAGGIHD------RNYMKFIAAAVSISVAYLCGLI

TrEMBL top hitse value%identityAlignment
A0A0A0KRC8 Uncharacterized protein1.9e-3078.07Show/hide
Query:  RRRTEIALILILIYSSMV-HSFAFKQLFVTDSIKHQESEHMEK-HGRRYNIEGRHGYTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIA
        RRRTE ALILILIYSSM+  SFAFKQL +TD+ KHQESEHMEK +GRRYNIEGRHGYT+GIP H I IT   GRGG G    GGNGA GIHD+N MKFIA
Subjt:  RRRTEIALILILIYSSMV-HSFAFKQLFVTDSIKHQESEHMEK-HGRRYNIEGRHGYTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIA

Query:  AAVSISVAYLCGLI
        AAVSISVAYLCGLI
Subjt:  AAVSISVAYLCGLI

A0A0A0KWM3 Uncharacterized protein9.6e-3579.66Show/hide
Query:  MGRRRRRTEIALILILIYSSMV-HSFAFKQLFVTDSIKHQESEHMEK-HGRRYNIEGRHGYTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYM
        MGRR+    IALILILIYSSM+  S AFKQLF+TD+  HQESEHMEK +GRRYN+EGRHGYTNGIP H I ITRGGGRGGGGGGR  GNGA GIHD+N M
Subjt:  MGRRRRRTEIALILILIYSSMV-HSFAFKQLFVTDSIKHQESEHMEK-HGRRYNIEGRHGYTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYM

Query:  KFIAAAVSISVAYLCGLI
        KFIAAAVSISVAYLCGLI
Subjt:  KFIAAAVSISVAYLCGLI

A0A1S3BFU5 transformer-2 protein homolog alpha-like6.4e-55100Show/hide
Query:  MGRRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKF
        MGRRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKF
Subjt:  MGRRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKF

Query:  IAAAVSISVAYLCGLI
        IAAAVSISVAYLCGLI
Subjt:  IAAAVSISVAYLCGLI

A0A6J1J9S2 glycine-rich protein DOT1-like3.7e-1058.7Show/hide
Query:  RRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYTNG--IPIHDITITRGGGRGGGGGGRGG-GNGAGG
        RRRRR E+ALIL+L++SSMV SFAFKQLF TD  + QESEH EK+G+           NG  IP+H I I  GGG G GGGGRGG G G+ G
Subjt:  RRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYTNG--IPIHDITITRGGGRGGGGGGRGG-GNGAGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGAAGAAGAAGAAGAACAGAGATTGCATTGATTTTGATTCTGATATATTCATCTATGGTGCATTCATTTGCTTTCAAACAACTCTTTGTAACAGACAGTATTAA
GCACCAAGAAAGTGAGCATATGGAGAAACATGGTAGAAGATACAATATAGAGGGTCGACATGGTTATACAAATGGGATCCCAATACATGATATAACAATTACCCGCGGTG
GAGGAAGAGGCGGCGGCGGCGGCGGCAGAGGAGGAGGTAATGGTGCCGGAGGTATTCATGATCGAAACTACATGAAGTTTATAGCAGCTGCAGTTTCCATATCAGTTGCA
TATTTGTGTGGACTTATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGAAGAAGAAGAAGAACAGAGATTGCATTGATTTTGATTCTGATATATTCATCTATGGTGCATTCATTTGCTTTCAAACAACTCTTTGTAACAGACAGTATTAA
GCACCAAGAAAGTGAGCATATGGAGAAACATGGTAGAAGATACAATATAGAGGGTCGACATGGTTATACAAATGGGATCCCAATACATGATATAACAATTACCCGCGGTG
GAGGAAGAGGCGGCGGCGGCGGCGGCAGAGGAGGAGGTAATGGTGCCGGAGGTATTCATGATCGAAACTACATGAAGTTTATAGCAGCTGCAGTTTCCATATCAGTTGCA
TATTTGTGTGGACTTATTTGA
Protein sequenceShow/hide protein sequence
MGRRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIAAAVSISVA
YLCGLI