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Pay0011447 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0011447
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionAP-3 complex subunit sigma-like
Genome locationchr12:14849767..14851224
RNA-Seq ExpressionPay0011447
SyntenyPay0011447
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0006896 - Golgi to vacuole transport (biological process)
GO:0030123 - AP-3 adaptor complex (cellular component)
GO:0030659 - cytoplasmic vesicle membrane (cellular component)
InterPro domainsIPR000804 - Clathrin adaptor complex, small chain
IPR011012 - Longin-like domain superfamily
IPR016635 - Adaptor protein complex, sigma subunit
IPR022775 - AP complex, mu/sigma subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058373.1 AP-3 complex subunit sigma [Cucumis melo var. makuwa]4.9e-4096.7Show/hide
Query:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQG
        MIRSV+VMNTEGKP+FAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDS LVYKHFATLYFVLVFNSSENELAMLDLIQG
Subjt:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQG

TYK30832.1 AP-3 complex subunit sigma-like [Cucumis melo var. makuwa]1.5e-4191Show/hide
Query:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQGSSNILCDGF
        MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIR+VY VLCSRAENISNFVEA+SIFGSDS LVYKHFATLYF+LVFNSSEN+LAMLDLIQ +SNIL DGF
Subjt:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQGSSNILCDGF

XP_008452384.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo]2.4e-3996.67Show/hide
Query:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQ
        MIRSV+VMNTEGKP+FAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDS LVYKHFATLYFVLVFNSSENELAMLDLIQ
Subjt:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQ

XP_008464326.1 PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo]5.7e-8994.94Show/hide
Query:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQGSSNILCDGF
        MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIR+VY VLCSRAENISNFVEA+SIFGSDS LVYKHFATLYF+LVFNSSEN+LAMLDLIQ +SNIL DGF
Subjt:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQGSSNILCDGF

Query:  NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISYVDDSGGLEATLGIKFIMVVGE
        NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISYVDDSGGLEATLGIKFIMVVGE
Subjt:  NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISYVDDSGGLEATLGIKFIMVVGE

XP_011655957.1 AP-3 complex subunit sigma [Cucumis sativus]4.5e-3893.33Show/hide
Query:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQ
        MIRSV+VMNTEGKP+FAKFYDFQPIEKQQELIRSVYGVLCSRAEN+SNFVE ESIFG DS LVYKHFATLYFVLVFNSSENELAMLDLIQ
Subjt:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQ

TrEMBL top hitse value%identityAlignment
A0A0A0KRY4 AP complex subunit sigma2.8e-4193.55Show/hide
Query:  MNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQGSSNILCDGF
        MNTEGKP+FAKFYDFQPIEKQQELIRSVYGVLCSRAEN+SNFVE ESIFG DS LVYKHFATLYFVLVFNSSENELAMLDLIQG+SNILCDGF
Subjt:  MNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQGSSNILCDGF

A0A1S3BT37 AP complex subunit sigma1.2e-3996.67Show/hide
Query:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQ
        MIRSV+VMNTEGKP+FAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDS LVYKHFATLYFVLVFNSSENELAMLDLIQ
Subjt:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQ

A0A1S3CL75 AP-3 complex subunit sigma-like2.7e-8994.94Show/hide
Query:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQGSSNILCDGF
        MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIR+VY VLCSRAENISNFVEA+SIFGSDS LVYKHFATLYF+LVFNSSEN+LAMLDLIQ +SNIL DGF
Subjt:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQGSSNILCDGF

Query:  NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISYVDDSGGLEATLGIKFIMVVGE
        NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISYVDDSGGLEATLGIKFIMVVGE
Subjt:  NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISYVDDSGGLEATLGIKFIMVVGE

A0A5A7UR76 AP-3 complex subunit sigma2.3e-4096.7Show/hide
Query:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQG
        MIRSV+VMNTEGKP+FAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDS LVYKHFATLYFVLVFNSSENELAMLDLIQG
Subjt:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQG

A0A5D3E4J0 AP complex subunit sigma7.3e-4291Show/hide
Query:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQGSSNILCDGF
        MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIR+VY VLCSRAENISNFVEA+SIFGSDS LVYKHFATLYF+LVFNSSEN+LAMLDLIQ +SNIL DGF
Subjt:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQGSSNILCDGF

SwissProt top hitse value%identityAlignment
P59780 AP-3 complex subunit sigma-21.6e-1747.25Show/hide
Query:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIF-GSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQ
        MI++++V N  GKP+  +FY   P E QQ+++R  + ++  R +NI NF+E  S+  GSD  L+Y+H+ATLYFV   +SSE+EL +LDLIQ
Subjt:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIF-GSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQ

Q1JQA3 AP-3 complex subunit sigma-21.6e-1747.25Show/hide
Query:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIF-GSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQ
        MI++++V N  GKP+  +FY   P E QQ+++R  + ++  R +NI NF+E  S+  GSD  L+Y+H+ATLYFV   +SSE+EL +LDLIQ
Subjt:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIF-GSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQ

Q5RDP9 AP-3 complex subunit sigma-21.6e-1747.25Show/hide
Query:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIF-GSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQ
        MI++++V N  GKP+  +FY   P E QQ+++R  + ++  R +NI NF+E  S+  GSD  L+Y+H+ATLYFV   +SSE+EL +LDLIQ
Subjt:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIF-GSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQ

Q8BSZ2 AP-3 complex subunit sigma-21.6e-1747.25Show/hide
Query:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIF-GSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQ
        MI++++V N  GKP+  +FY   P E QQ+++R  + ++  R +NI NF+E  S+  GSD  L+Y+H+ATLYFV   +SSE+EL +LDLIQ
Subjt:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIF-GSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQ

Q8VZ37 AP-3 complex subunit sigma7.1e-3475.56Show/hide
Query:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQ
        MI++VM+MNT+GKP+ AKFYD+ P+EKQQELIR V+ VLCSR EN+SNF+E ES+FG DS LVYKH+ATLYFVLVF+ SENELAMLDLIQ
Subjt:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQ

Arabidopsis top hitse value%identityAlignment
AT2G17380.1 associated protein 192.3e-0830.21Show/hide
Query:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQGSSNIL
        MI  V++++ +GK +  K+Y     +++ ++IR + GV+ +R   + NF+E          +VYK +A+LYF +  + ++NEL +L++I     IL
Subjt:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQGSSNIL

AT2G19790.1 SNARE-like superfamily protein3.7e-0627.27Show/hide
Query:  IRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLI
        IR ++++N +G+ + A++Y++  +E+++ L   +     +R +   +FVE  +       +VY+ +A+L+F++  +  ENELA+L+ I
Subjt:  IRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLI

AT3G50860.1 Clathrin adaptor complex small chain family protein5.0e-3575.56Show/hide
Query:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQ
        MI++VM+MNT+GKP+ AKFYD+ P+EKQQELIR V+ VLCSR EN+SNF+E ES+FG DS LVYKH+ATLYFVLVF+ SENELAMLDLIQ
Subjt:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQ

AT4G35410.1 Clathrin adaptor complex small chain family protein2.3e-0831.25Show/hide
Query:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQGSSNIL
        MI  V++++ +GK +  K+Y     +++ ++IR + GV+ +R   + NFVE          +VYK +A+LYF +  +  +NEL +L++I     IL
Subjt:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQGSSNIL

AT4G35410.2 Clathrin adaptor complex small chain family protein2.3e-0831.25Show/hide
Query:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQGSSNIL
        MI  V++++ +GK +  K+Y     +++ ++IR + GV+ +R   + NFVE          +VYK +A+LYF +  +  +NEL +L++I     IL
Subjt:  MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQGSSNIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATACGGTCGGTGATGGTGATGAATACTGAGGGCAAGCCTCAGTTTGCTAAGTTCTACGATTTTCAGCCCATAGAGAAGCAGCAGGAGCTCATTCGCAGCGTC
TATGGAGTACTTTGCAGTCGAGCTGAGAACATCAGCAATTTCGTGGAGGCTGAGTCCATCTTCGGTTCGGACTCGAGTCTTGTTTACAAACACTTTGCAACCCTT
TATTTTGTGCTTGTCTTTAACAGTTCTGAGAATGAGCTTGCCATGCTTGACCTGATACAAGGTTCTTCCAATATTTTATGTGATGGATTTAATTACAAAAGAAAT
GCATATACAAAAGCAGACTTACAATGCATGAATGCATATACAAAAGAGGTTGAGAGTTGCTTCCCTTCTGATGCAAATATCAATAATGTTGCAAAGTTTCTGACG
GGCACTGTTTGGTCTATTAAAAAACAATGTAAAGTATTAATGATCAGCTATGTTGATGATTCTGGTGGTTTGGAAGCAACTCTAGGCATTAAATTCATTATGGTT
GTTGGAGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGATACGGTCGGTGATGGTGATGAATACTGAGGGCAAGCCTCAGTTTGCTAAGTTCTACGATTTTCAGCCCATAGAGAAGCAGCAGGAGCTCATTCGCAGCGTC
TATGGAGTACTTTGCAGTCGAGCTGAGAACATCAGCAATTTCGTGGAGGCTGAGTCCATCTTCGGTTCGGACTCGAGTCTTGTTTACAAACACTTTGCAACCCTT
TATTTTGTGCTTGTCTTTAACAGTTCTGAGAATGAGCTTGCCATGCTTGACCTGATACAAGGTTCTTCCAATATTTTATGTGATGGATTTAATTACAAAAGAAAT
GCATATACAAAAGCAGACTTACAATGCATGAATGCATATACAAAAGAGGTTGAGAGTTGCTTCCCTTCTGATGCAAATATCAATAATGTTGCAAAGTTTCTGACG
GGCACTGTTTGGTCTATTAAAAAACAATGTAAAGTATTAATGATCAGCTATGTTGATGATTCTGGTGGTTTGGAAGCAACTCTAGGCATTAAATTCATTATGGTT
GTTGGAGAATAG
Protein sequenceShow/hide protein sequence
MIRSVMVMNTEGKPQFAKFYDFQPIEKQQELIRSVYGVLCSRAENISNFVEAESIFGSDSSLVYKHFATLYFVLVFNSSENELAMLDLIQGSSNILCDGFNYKRN
AYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISYVDDSGGLEATLGIKFIMVVGE