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Pay0011565 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0011565
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Descriptionprotein RADIALIS-like 1
Genome locationchr01:18336786..18338355
RNA-Seq ExpressionPay0011565
SyntenyPay0011565
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036150.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]4.2e-39100Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQG
        MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQG
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQG

KAE8645641.1 hypothetical protein Csa_020418 [Cucumis sativus]5.2e-3797.53Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQ
        MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG GNQ
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQ

XP_004151125.2 protein RADIALIS-like 1 [Cucumis sativus]1.4e-3797.56Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQG
        MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG GNQG
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQG

XP_008447024.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]4.2e-39100Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQG
        MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQG
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQG

XP_038888369.1 protein RADIALIS-like 1 [Benincasa hispida]4.1e-3492.5Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGN
        MASMSSHGSG+WT KQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVK HYALLVEDVKFIESGQVPFPYR+S  GN
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGN

TrEMBL top hitse value%identityAlignment
A0A0A0K348 SANT domain-containing protein6.6e-3897.56Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQG
        MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG GNQG
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQG

A0A1S3BFW6 protein RADIALIS-like 12.0e-39100Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQG
        MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQG
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQG

A0A5A7SYK4 Protein RADIALIS-like 12.0e-39100Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQG
        MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQG
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQG

A0A6J1C385 protein RADIALIS-like 19.8e-3489.02Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQG
        MASMSSHGS  WT KQNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVEDVKFIESGQV FPYRTSG G+ G
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQG

A0A6J1GJE9 protein RADIALIS-like 13.4e-3491.57Show/hide
Query:  MASMSSHGS-GTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQG
        MASMSSHGS GTWTVKQNKAFE+ALAVYDQDTPDRWLNVAKAV GKT EEV+RHYALLVEDVKFIESGQVPFPYRTSG G QG
Subjt:  MASMSSHGS-GTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQG

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.3e-2771.95Show/hide
Query:  ASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGDGNQG
        +SMSS  SG+WT KQNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+  IE+G VPFP YRTSG    G
Subjt:  ASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGDGNQG

Q58FS3 Transcription factor RADIALIS1.0e-2470.67Show/hide
Query:  SSHGSG-TWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSG
        S+ GSG  W+ K+NKAFE+ALAVYD+DTPDRW NVA+AV G+T EEVK+HY +LVED+K+IESG+VPFP YRT+G
Subjt:  SSHGSG-TWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSG

Q6NNN0 Protein RADIALIS-like 33.4e-2364.2Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGDGN
        MAS S   S +WT K+NK FE+ALA YDQDTPDRW NVA+AVGGK+AEEV+RHY LL+ DV  IESG+ P P YR++G+ +
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGDGN

Q8GW75 Protein RADIALIS-like 53.7e-2264.63Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGDGNQ
        MAS S   S +WT KQNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED+  IE   VP P Y+T   G++
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGDGNQ

Q9SIJ5 Protein RADIALIS-like 22.3e-2773.17Show/hide
Query:  SMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YR-TSGDGNQG
        SMSS+GSG+WTVKQNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++ IE+G VPFP Y+ T+G+ N+G
Subjt:  SMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YR-TSGDGNQG

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.6e-2364.63Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGDGNQ
        MAS S   S +WT KQNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED+  IE   VP P Y+T   G++
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGDGNQ

AT1G75250.1 RAD-like 62.6e-2368.42Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRT
        MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED+  IE+G+VP P Y+T
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRT

AT1G75250.2 RAD-like 62.6e-2368.42Show/hide
Query:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRT
        MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED+  IE+G+VP P Y+T
Subjt:  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRT

AT2G21650.1 Homeodomain-like superfamily protein1.6e-2873.17Show/hide
Query:  SMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YR-TSGDGNQG
        SMSS+GSG+WTVKQNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++ IE+G VPFP Y+ T+G+ N+G
Subjt:  SMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YR-TSGDGNQG

AT4G39250.1 RAD-like 11.6e-2871.95Show/hide
Query:  ASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGDGNQG
        +SMSS  SG+WT KQNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+  IE+G VPFP YRTSG    G
Subjt:  ASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGDGNQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCGATGTCTTCTCATGGATCTGGTACATGGACTGTAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAA
TGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTACGCACTTCTTGTCGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATC
GAACCTCCGGAGATGGTAACCAAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCGATGTCTTCTCATGGATCTGGTACATGGACTGTAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAA
TGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTACGCACTTCTTGTCGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATC
GAACCTCCGGAGATGGTAACCAAGGATGAGGAACATGAAGTTCCACCATGAGATTTGATGGTGAGAAGTAATGGAAGAATAAAGGAGGAAAGAAGAATGAATCTTTTGCT
CTAACTTATATATAAAATATGATATATTTCTTGTGTTTTGTTTTTTCAATGATATCTAATATTATTGATTTGTGTTAAGCTTTTAAGTTATTGGTTAATTCCATGTATTA
TTGTGC
Protein sequenceShow/hide protein sequence
MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQG