CuGenDBv2

Gene ID	Pay0011571
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Pol protein
Genome location	chr06:16605583..16606077
RNA-Seq Expression	Pay0011571
Synteny	Pay0011571
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040689.1 pol protein [Cucumis melo var. makuwa]

6.6e-84

96.34

Show/hide

Query:  MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLKFEVGDKVFLKVAPMRGVLQFERRGKLSPRFVGSFE
        MAPFEALYGKCCRSPVCWGEVGEQRLMGPELV+STNEAIQKIRSRMHTAQSRQKSYADVRRKDL+FEVGDKVFLKVAPMRGVL+FERRGKLSPRFVG FE
Subjt:  MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLKFEVGDKVFLKVAPMRGVLQFERRGKLSPRFVGSFE

Query:  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAK
        ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYV DPSHVVDYEPLEIDENLSYTEQPVEVLA+
Subjt:  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAK

KAA0040871.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

2.3e-84

96.95

Show/hide

Query:  MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLKFEVGDKVFLKVAPMRGVLQFERRGKLSPRFVGSFE
        MAPFEALYGKCCRSPVCWGEVGEQRLMGPELV STNEAIQKIRSRMHTAQSRQKSYADVRRKDL+FEVGDKVFLKVAPMRGVL+FERRGKLSPRFVG FE
Subjt:  MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLKFEVGDKVFLKVAPMRGVLQFERRGKLSPRFVGSFE

Query:  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAK
        ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLA+
Subjt:  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAK

KAA0048733.1 pol protein [Cucumis melo var. makuwa]

6.6e-84

96.34

Show/hide

Query:  MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLKFEVGDKVFLKVAPMRGVLQFERRGKLSPRFVGSFE
        MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL+FEVGDKVFLKVAPMRGVL+FERRGKLSPRFVG FE
Subjt:  MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLKFEVGDKVFLKVAPMRGVLQFERRGKLSPRFVGSFE

Query:  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAK
        IL+RIGPVAYRLALPPSLSTVHDVFHVSMLRKYV DPSHVVDYEPLEIDENLSYTEQPVEVLA+
Subjt:  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAK

KAA0056702.1 pol protein [Cucumis melo var. makuwa]

2.3e-84

96.95

Show/hide

Query:  MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLKFEVGDKVFLKVAPMRGVLQFERRGKLSPRFVGSFE
        MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL+FEVGDKVFLKVAPMRGVL+FERRGKLSPRFVG FE
Subjt:  MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLKFEVGDKVFLKVAPMRGVLQFERRGKLSPRFVGSFE

Query:  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAK
        ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYV DPSHVVDYEPLEIDENLSYTEQPVEVLA+
Subjt:  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAK

KAA0063495.1 pol protein [Cucumis melo var. makuwa]

3.0e-84

96.34

Show/hide

Query:  MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLKFEVGDKVFLKVAPMRGVLQFERRGKLSPRFVGSFE
        MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL+FE+GDKVFLKVAPMRGVL+FERRGKLSPRFVG FE
Subjt:  MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLKFEVGDKVFLKVAPMRGVLQFERRGKLSPRFVGSFE

Query:  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAK
        ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYV DPSHVVDYEPLEIDENLSYTEQPVEVLA+
Subjt:  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TGS7 Reverse transcriptase

1.1e-84

96.95

Show/hide

Query:  MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLKFEVGDKVFLKVAPMRGVLQFERRGKLSPRFVGSFE
        MAPFEALYGKCCRSPVCWGEVGEQRLMGPELV STNEAIQKIRSRMHTAQSRQKSYADVRRKDL+FEVGDKVFLKVAPMRGVL+FERRGKLSPRFVG FE
Subjt:  MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLKFEVGDKVFLKVAPMRGVLQFERRGKLSPRFVGSFE

Query:  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAK
        ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLA+
Subjt:  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAK

A0A5A7THE6 Reverse transcriptase

3.2e-84

96.34

Show/hide

Query:  MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLKFEVGDKVFLKVAPMRGVLQFERRGKLSPRFVGSFE
        MAPFEALYGKCCRSPVCWGEVGEQRLMGPELV+STNEAIQKIRSRMHTAQSRQKSYADVRRKDL+FEVGDKVFLKVAPMRGVL+FERRGKLSPRFVG FE
Subjt:  MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLKFEVGDKVFLKVAPMRGVLQFERRGKLSPRFVGSFE

Query:  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAK
        ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYV DPSHVVDYEPLEIDENLSYTEQPVEVLA+
Subjt:  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAK

A0A5A7TYQ5 Pol protein

3.2e-84

96.34

Show/hide

Query:  MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLKFEVGDKVFLKVAPMRGVLQFERRGKLSPRFVGSFE
        MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL+FEVGDKVFLKVAPMRGVL+FERRGKLSPRFVG FE
Subjt:  MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLKFEVGDKVFLKVAPMRGVLQFERRGKLSPRFVGSFE

Query:  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAK
        IL+RIGPVAYRLALPPSLSTVHDVFHVSMLRKYV DPSHVVDYEPLEIDENLSYTEQPVEVLA+
Subjt:  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAK

A0A5A7ULI8 Pol protein

1.1e-84

96.95

Show/hide

Query:  MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLKFEVGDKVFLKVAPMRGVLQFERRGKLSPRFVGSFE
        MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL+FEVGDKVFLKVAPMRGVL+FERRGKLSPRFVG FE
Subjt:  MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLKFEVGDKVFLKVAPMRGVLQFERRGKLSPRFVGSFE

Query:  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAK
        ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYV DPSHVVDYEPLEIDENLSYTEQPVEVLA+
Subjt:  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAK

A0A5A7VC70 Pol protein

1.4e-84

96.34

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Query:  MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLKFEVGDKVFLKVAPMRGVLQFERRGKLSPRFVGSFE
        MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL+FE+GDKVFLKVAPMRGVL+FERRGKLSPRFVG FE
Subjt:  MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLKFEVGDKVFLKVAPMRGVLQFERRGKLSPRFVGSFE

Query:  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAK
        ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYV DPSHVVDYEPLEIDENLSYTEQPVEVLA+
Subjt:  ILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCACCATTTGAGGCCTTGTACGGCAAATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTGGGTGAGCAGAGATTGATGGGCCCTGAGTTAGTTCAGTCTACTAACGA
AGCGATACAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGGCAGAAGAGTTATGCAGATGTGAGGCGGAAGGATCTCAAATTTGAGGTAGGGGACAAGGTGTTCT
TAAAGGTAGCACCTATGAGAGGTGTCTTACAATTTGAAAGGAGGGGAAAACTGAGTCCCCGTTTTGTTGGGTCGTTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTAT
CGCTTGGCGTTGCCACCATCACTCTCGACAGTTCATGATGTGTTTCATGTTTCTATGTTGAGGAAGTACGTGCTAGATCCATCCCATGTAGTAGATTACGAGCCACTAGA
GATTGACGAAAACTTGAGCTATACTGAACAACCCGTTGAGGTGCTGGCTAAATAG

mRNA sequence

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Protein sequence

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MAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLKFEVGDKVFLKVAPMRGVLQFERRGKLSPRFVGSFEILERIGPVAY
RLALPPSLSTVHDVFHVSMLRKYVLDPSHVVDYEPLEIDENLSYTEQPVEVLAK

Pay0011571 (gene) of Melon (Payzawat) v1 genome