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Pay0011600 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0011600
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionGag/pol protein
Genome locationchr12:6307466..6307924
RNA-Seq ExpressionPay0011600
SyntenyPay0011600
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]4.7e-5678.81Show/hide
Query:  SATLNMLAVDKLNGNNYASWKNTINTVLIINDLRFILVEECPQVPAANATQTFREAHERWVKANKKARAYILTSLS--------------------KEMF
        SATLNMLA DKLNGNNYASWKNTINTVLII+DLRF+LVEECPQVPAANAT+T RE +ERW KAN+KARAYIL SLS                    +EMF
Subjt:  SATLNMLAVDKLNGNNYASWKNTINTVLIINDLRFILVEECPQVPAANATQTFREAHERWVKANKKARAYILTSLS--------------------KEMF

Query:  GQAFYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
        GQA YQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
Subjt:  GQAFYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS

KAA0051847.1 gag/pol protein [Cucumis melo var. makuwa]3.2e-5780.26Show/hide
Query:  MSATLNMLAVDKLNGNNYASWKNTINTVLIINDLRFILVEECPQVPAANATQTFREAHERWVKANKKARAYILTSLSK--------------------EM
        MSATLNMLAVDKLNGNNYASWKNTINTVLII+DL F+LVEECPQVPAANAT+T REA+ERW KAN+KARAYIL SLSK                    EM
Subjt:  MSATLNMLAVDKLNGNNYASWKNTINTVLIINDLRFILVEECPQVPAANATQTFREAHERWVKANKKARAYILTSLSK--------------------EM

Query:  FGQAFYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
        FGQA YQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
Subjt:  FGQAFYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]4.7e-5678.81Show/hide
Query:  SATLNMLAVDKLNGNNYASWKNTINTVLIINDLRFILVEECPQVPAANATQTFREAHERWVKANKKARAYILTSLS--------------------KEMF
        SATLNMLA DKLNGNNYASWKNTINTVLII+DLRF+LVEECPQVPAANAT+T RE +ERW KAN+KARAYIL SLS                    +EMF
Subjt:  SATLNMLAVDKLNGNNYASWKNTINTVLIINDLRFILVEECPQVPAANATQTFREAHERWVKANKKARAYILTSLS--------------------KEMF

Query:  GQAFYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
        GQA YQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
Subjt:  GQAFYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]4.7e-5678.81Show/hide
Query:  SATLNMLAVDKLNGNNYASWKNTINTVLIINDLRFILVEECPQVPAANATQTFREAHERWVKANKKARAYILTSLS--------------------KEMF
        SATLNMLA DKLNGNNYASWKNTINTVLII+DLRF+LVEECPQVPAANAT+T RE +ERW KAN+KARAYIL SLS                    +EMF
Subjt:  SATLNMLAVDKLNGNNYASWKNTINTVLIINDLRFILVEECPQVPAANATQTFREAHERWVKANKKARAYILTSLS--------------------KEMF

Query:  GQAFYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
        GQA YQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
Subjt:  GQAFYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS

XP_008464721.1 PREDICTED: uncharacterized protein LOC103502537 [Cucumis melo]3.2e-5780.26Show/hide
Query:  MSATLNMLAVDKLNGNNYASWKNTINTVLIINDLRFILVEECPQVPAANATQTFREAHERWVKANKKARAYILTSLSK--------------------EM
        MSATLNMLAVDKLNGNNYASWKNTINTVLII+DL F+LVEECPQVPAANAT+T REA+ERW KAN+KARAYIL SLSK                    EM
Subjt:  MSATLNMLAVDKLNGNNYASWKNTINTVLIINDLRFILVEECPQVPAANATQTFREAHERWVKANKKARAYILTSLSK--------------------EM

Query:  FGQAFYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
        FGQA YQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
Subjt:  FGQAFYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS

TrEMBL top hitse value%identityAlignment
A0A1S3CM79 uncharacterized protein LOC1035025371.6e-5780.26Show/hide
Query:  MSATLNMLAVDKLNGNNYASWKNTINTVLIINDLRFILVEECPQVPAANATQTFREAHERWVKANKKARAYILTSLSK--------------------EM
        MSATLNMLAVDKLNGNNYASWKNTINTVLII+DL F+LVEECPQVPAANAT+T REA+ERW KAN+KARAYIL SLSK                    EM
Subjt:  MSATLNMLAVDKLNGNNYASWKNTINTVLIINDLRFILVEECPQVPAANATQTFREAHERWVKANKKARAYILTSLSK--------------------EM

Query:  FGQAFYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
        FGQA YQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
Subjt:  FGQAFYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS

A0A5A7SMH8 Gag/pol protein2.3e-5678.81Show/hide
Query:  SATLNMLAVDKLNGNNYASWKNTINTVLIINDLRFILVEECPQVPAANATQTFREAHERWVKANKKARAYILTSLS--------------------KEMF
        SATLNMLA DKLNGNNYASWKNTINTVLII+DLRF+LVEECPQVPAANAT+T RE +ERW KAN+KARAYIL SLS                    +EMF
Subjt:  SATLNMLAVDKLNGNNYASWKNTINTVLIINDLRFILVEECPQVPAANATQTFREAHERWVKANKKARAYILTSLS--------------------KEMF

Query:  GQAFYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
        GQA YQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
Subjt:  GQAFYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS

A0A5A7TU93 Gag/pol protein2.3e-5678.81Show/hide
Query:  SATLNMLAVDKLNGNNYASWKNTINTVLIINDLRFILVEECPQVPAANATQTFREAHERWVKANKKARAYILTSLS--------------------KEMF
        SATLNMLA DKLNGNNYASWKNTINTVLII+DLRF+LVEECPQVPAANAT+T RE +ERW KAN+KARAYIL SLS                    +EMF
Subjt:  SATLNMLAVDKLNGNNYASWKNTINTVLIINDLRFILVEECPQVPAANATQTFREAHERWVKANKKARAYILTSLS--------------------KEMF

Query:  GQAFYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
        GQA YQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
Subjt:  GQAFYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS

A0A5A7UBR0 Gag/pol protein1.6e-5780.26Show/hide
Query:  MSATLNMLAVDKLNGNNYASWKNTINTVLIINDLRFILVEECPQVPAANATQTFREAHERWVKANKKARAYILTSLSK--------------------EM
        MSATLNMLAVDKLNGNNYASWKNTINTVLII+DL F+LVEECPQVPAANAT+T REA+ERW KAN+KARAYIL SLSK                    EM
Subjt:  MSATLNMLAVDKLNGNNYASWKNTINTVLIINDLRFILVEECPQVPAANATQTFREAHERWVKANKKARAYILTSLSK--------------------EM

Query:  FGQAFYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
        FGQA YQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
Subjt:  FGQAFYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS

A0A5D3CPJ6 Gag/pol protein2.3e-5678.81Show/hide
Query:  SATLNMLAVDKLNGNNYASWKNTINTVLIINDLRFILVEECPQVPAANATQTFREAHERWVKANKKARAYILTSLS--------------------KEMF
        SATLNMLA DKLNGNNYASWKNTINTVLII+DLRF+LVEECPQVPAANAT+T RE +ERW KAN+KARAYIL SLS                    +EMF
Subjt:  SATLNMLAVDKLNGNNYASWKNTINTVLIINDLRFILVEECPQVPAANATQTFREAHERWVKANKKARAYILTSLS--------------------KEMF

Query:  GQAFYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
        GQA YQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
Subjt:  GQAFYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGCTACTTTGAATATGCTGGCTGTTGATAAACTTAATGGCAATAATTATGCATCTTGGAAAAATACTATCAACACTGTGCTAATCATCAATGACCTTAGATTTAT
CCTCGTTGAGGAGTGTCCTCAAGTCCCAGCTGCTAATGCAACTCAAACATTTCGAGAAGCACATGAGCGATGGGTCAAGGCAAATAAAAAAGCCCGAGCATACATCTTGA
CAAGCTTATCTAAAGAGATGTTTGGTCAGGCCTTTTATCAGATTAAGCATGATGCTCTGAAATACATTTATAATGCCCGTATGAATGAGGGAGCCTCAGTACGAGAACAT
GTTCTCAATATGATGGTTCATTTCAACGTGGCAGAAATGAATGGGGCCGTCATCGATGAAGCCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTGCTACTTTGAATATGCTGGCTGTTGATAAACTTAATGGCAATAATTATGCATCTTGGAAAAATACTATCAACACTGTGCTAATCATCAATGACCTTAGATTTAT
CCTCGTTGAGGAGTGTCCTCAAGTCCCAGCTGCTAATGCAACTCAAACATTTCGAGAAGCACATGAGCGATGGGTCAAGGCAAATAAAAAAGCCCGAGCATACATCTTGA
CAAGCTTATCTAAAGAGATGTTTGGTCAGGCCTTTTATCAGATTAAGCATGATGCTCTGAAATACATTTATAATGCCCGTATGAATGAGGGAGCCTCAGTACGAGAACAT
GTTCTCAATATGATGGTTCATTTCAACGTGGCAGAAATGAATGGGGCCGTCATCGATGAAGCCAGTTAG
Protein sequenceShow/hide protein sequence
MSATLNMLAVDKLNGNNYASWKNTINTVLIINDLRFILVEECPQVPAANATQTFREAHERWVKANKKARAYILTSLSKEMFGQAFYQIKHDALKYIYNARMNEGASVREH
VLNMMVHFNVAEMNGAVIDEAS