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Pay0011885 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0011885
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Descriptionprotein LTV1 homolog
Genome locationchr11:1636718..1641583
RNA-Seq ExpressionPay0011885
SyntenyPay0011885
Gene Ontology termsGO:0042274 - ribosomal small subunit biogenesis (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ99459.1 protein LTV1-like protein [Cucumis melo var. makuwa]2.1e-3896.63Show/hide
Query:  MNYDEENGGFRSCMQSRGEVGGTSSPENDRRKILELEFPDDGYNIVCCIFGRLRILVVAYDTSRMIVSRVNVDVAENVYKVASKIVGVR
        MNYDEENGGFRSCMQSRGEVGGTSSPENDRRKILELEFPDDGYNIVCCIFGRLRIL  AYDTSRMIVSRVNVDV ENVYKVASKIVGVR
Subjt:  MNYDEENGGFRSCMQSRGEVGGTSSPENDRRKILELEFPDDGYNIVCCIFGRLRILVVAYDTSRMIVSRVNVDVAENVYKVASKIVGVR

XP_008448616.1 PREDICTED: protein LTV1 homolog [Cucumis melo]3.8e-5147.81Show/hide
Query:  DEENGGFRSCMQSRGEVGGTSS-PENDRRKILELEFPDDGYNIVCCI-------------------FGRLRILVVAYDTSRMIVSRVNVDVAENVYKVAS
        +EENGGF S MQSRGEVGGTSS PEN RR+ILEL FPDDGYN +  +                     ++     AYD SRM+VS++NVD  ENVYKVAS
Subjt:  DEENGGFRSCMQSRGEVGGTSS-PENDRRKILELEFPDDGYNIVCCI-------------------FGRLRILVVAYDTSRMIVSRVNVDVAENVYKVAS

Query:  KIVGVRVQNVVDPEIVALLDDS-----------------VELGL--------------------------------------------------------
        KIVG+RVQNVVDPEI ALLDD                  V+  L                                                        
Subjt:  KIVGVRVQNVVDPEIVALLDDS-----------------VELGL--------------------------------------------------------

Query:  --------------------ASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEILQSASDVIHRCMEYA
                            ASSN    DCDEPCIA+EDESLAQKLNHAL NHSKDDLELEQG KAPA+ILSGK GVEDKE+LQSASDVIHRCMEYA
Subjt:  --------------------ASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEILQSASDVIHRCMEYA

XP_011650323.1 protein LTV1 homolog [Cucumis sativus]1.7e-4846.46Show/hide
Query:  DEENGGFRSCMQSRGEVGGTSS-PENDRRKILELEFPDDGYNIVCCI-------------------FGRLRILVVAYDTSRMIVSRVNVDVAENVYKVAS
        +EENGGF S MQ  G+VGGTSS PEN R+ ILEL FPDDGYN +  +                     ++     AYD SRMIVS++NVD  EN YKVAS
Subjt:  DEENGGFRSCMQSRGEVGGTSS-PENDRRKILELEFPDDGYNIVCCI-------------------FGRLRILVVAYDTSRMIVSRVNVDVAENVYKVAS

Query:  KIVGVRVQNVVDPEIVALLDDS-----------------VELGL--------------------------------------------------------
        KIVGVRVQNVVDPEI ALLDD                  V+  L                                                        
Subjt:  KIVGVRVQNVVDPEIVALLDDS-----------------VELGL--------------------------------------------------------

Query:  --------------------ASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEILQSASDVIHRCMEYA
                            ASS+S G DCDEPCIA+E+ESLAQKLNHAL NHSKDDLELEQG KAPA+ILSGK G EDKE+LQSASDVIHRCMEYA
Subjt:  --------------------ASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEILQSASDVIHRCMEYA

XP_022981924.1 protein LTV1 homolog [Cucurbita maxima]3.4e-3640.54Show/hide
Query:  DEENGGFRSCMQSRGEVGGTSS-PENDRRKILELEFPDDGYNIVCCI-------------------FGRLRILVVAYDTSRMIVSRVNVDVAENV-YKVA
        DEENGGF +  +SRGE+GG +S PEN RR+ILEL FPDDGYN +  +                     +L     AYD + +IVS+   D  EN+ YKVA
Subjt:  DEENGGFRSCMQSRGEVGGTSS-PENDRRKILELEFPDDGYNIVCCI-------------------FGRLRILVVAYDTSRMIVSRVNVDVAENV-YKVA

Query:  SKIVGVRVQNVVDPEIVALLDDS-----------------VELGL-------------------------------------------------------
        SK VGV+VQN +DPEI ALLDD                  V+  L                                                       
Subjt:  SKIVGVRVQNVVDPEIVALLDDS-----------------VELGL-------------------------------------------------------

Query:  -----------------ASSNSGGIDCDE--PCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEILQSASDVIHRCMEYA
                         AS + GGIDCDE    +A+E ESLAQKL HAL +HSKDDL+L+QG KAPA+ILSGK G  D+E+LQSASDVIHRCMEYA
Subjt:  -----------------ASSNSGGIDCDE--PCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEILQSASDVIHRCMEYA

XP_038898842.1 protein LTV1 homolog [Benincasa hispida]6.4e-4342.76Show/hide
Query:  DEENGGFRSCMQSRGEVGGTSS-PENDRRKILELEFPDDGYNIVCCI-------------------FGRLRILVVAYDTSRMIVSRVNVDVAENVYKVAS
        DE+NGGF   ++ R EVGGT+  PEN RR+ILEL FPDDGYN +  +                     ++     AYD SR+IVS+ N+D   N+YKVAS
Subjt:  DEENGGFRSCMQSRGEVGGTSS-PENDRRKILELEFPDDGYNIVCCI-------------------FGRLRILVVAYDTSRMIVSRVNVDVAENVYKVAS

Query:  KIVGVRVQNVVDPEIVALLDDS-----------------VELGL--------------------------------------------------------
        K VGVRVQNVVDPEI ALLDD                  V+  L                                                        
Subjt:  KIVGVRVQNVVDPEIVALLDDS-----------------VELGL--------------------------------------------------------

Query:  --------------------ASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEILQSASDVIHRCMEYA
                            ASS++ G DCDEPCIA+EDESLAQKLNHAL NHSKD+ ELEQG KAPA+IL+GK G+ED E+LQSASDVIHRCMEYA
Subjt:  --------------------ASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEILQSASDVIHRCMEYA

TrEMBL top hitse value%identityAlignment
A0A0A0L517 Uncharacterized protein8.5e-4946.46Show/hide
Query:  DEENGGFRSCMQSRGEVGGTSS-PENDRRKILELEFPDDGYNIVCCI-------------------FGRLRILVVAYDTSRMIVSRVNVDVAENVYKVAS
        +EENGGF S MQ  G+VGGTSS PEN R+ ILEL FPDDGYN +  +                     ++     AYD SRMIVS++NVD  EN YKVAS
Subjt:  DEENGGFRSCMQSRGEVGGTSS-PENDRRKILELEFPDDGYNIVCCI-------------------FGRLRILVVAYDTSRMIVSRVNVDVAENVYKVAS

Query:  KIVGVRVQNVVDPEIVALLDDS-----------------VELGL--------------------------------------------------------
        KIVGVRVQNVVDPEI ALLDD                  V+  L                                                        
Subjt:  KIVGVRVQNVVDPEIVALLDDS-----------------VELGL--------------------------------------------------------

Query:  --------------------ASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEILQSASDVIHRCMEYA
                            ASS+S G DCDEPCIA+E+ESLAQKLNHAL NHSKDDLELEQG KAPA+ILSGK G EDKE+LQSASDVIHRCMEYA
Subjt:  --------------------ASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEILQSASDVIHRCMEYA

A0A1S3BKZ8 protein LTV1 homolog1.8e-5147.81Show/hide
Query:  DEENGGFRSCMQSRGEVGGTSS-PENDRRKILELEFPDDGYNIVCCI-------------------FGRLRILVVAYDTSRMIVSRVNVDVAENVYKVAS
        +EENGGF S MQSRGEVGGTSS PEN RR+ILEL FPDDGYN +  +                     ++     AYD SRM+VS++NVD  ENVYKVAS
Subjt:  DEENGGFRSCMQSRGEVGGTSS-PENDRRKILELEFPDDGYNIVCCI-------------------FGRLRILVVAYDTSRMIVSRVNVDVAENVYKVAS

Query:  KIVGVRVQNVVDPEIVALLDDS-----------------VELGL--------------------------------------------------------
        KIVG+RVQNVVDPEI ALLDD                  V+  L                                                        
Subjt:  KIVGVRVQNVVDPEIVALLDDS-----------------VELGL--------------------------------------------------------

Query:  --------------------ASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEILQSASDVIHRCMEYA
                            ASSN    DCDEPCIA+EDESLAQKLNHAL NHSKDDLELEQG KAPA+ILSGK GVEDKE+LQSASDVIHRCMEYA
Subjt:  --------------------ASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEILQSASDVIHRCMEYA

A0A5D3BKI3 Protein LTV1-like protein1.0e-3896.63Show/hide
Query:  MNYDEENGGFRSCMQSRGEVGGTSSPENDRRKILELEFPDDGYNIVCCIFGRLRILVVAYDTSRMIVSRVNVDVAENVYKVASKIVGVR
        MNYDEENGGFRSCMQSRGEVGGTSSPENDRRKILELEFPDDGYNIVCCIFGRLRIL  AYDTSRMIVSRVNVDV ENVYKVASKIVGVR
Subjt:  MNYDEENGGFRSCMQSRGEVGGTSSPENDRRKILELEFPDDGYNIVCCIFGRLRILVVAYDTSRMIVSRVNVDVAENVYKVASKIVGVR

A0A5D3CI19 Protein LTV1-like protein1.8e-5147.81Show/hide
Query:  DEENGGFRSCMQSRGEVGGTSS-PENDRRKILELEFPDDGYNIVCCI-------------------FGRLRILVVAYDTSRMIVSRVNVDVAENVYKVAS
        +EENGGF S MQSRGEVGGTSS PEN RR+ILEL FPDDGYN +  +                     ++     AYD SRM+VS++NVD  ENVYKVAS
Subjt:  DEENGGFRSCMQSRGEVGGTSS-PENDRRKILELEFPDDGYNIVCCI-------------------FGRLRILVVAYDTSRMIVSRVNVDVAENVYKVAS

Query:  KIVGVRVQNVVDPEIVALLDDS-----------------VELGL--------------------------------------------------------
        KIVG+RVQNVVDPEI ALLDD                  V+  L                                                        
Subjt:  KIVGVRVQNVVDPEIVALLDDS-----------------VELGL--------------------------------------------------------

Query:  --------------------ASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEILQSASDVIHRCMEYA
                            ASSN    DCDEPCIA+EDESLAQKLNHAL NHSKDDLELEQG KAPA+ILSGK GVEDKE+LQSASDVIHRCMEYA
Subjt:  --------------------ASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEILQSASDVIHRCMEYA

A0A6J1J360 protein LTV1 homolog1.7e-3640.54Show/hide
Query:  DEENGGFRSCMQSRGEVGGTSS-PENDRRKILELEFPDDGYNIVCCI-------------------FGRLRILVVAYDTSRMIVSRVNVDVAENV-YKVA
        DEENGGF +  +SRGE+GG +S PEN RR+ILEL FPDDGYN +  +                     +L     AYD + +IVS+   D  EN+ YKVA
Subjt:  DEENGGFRSCMQSRGEVGGTSS-PENDRRKILELEFPDDGYNIVCCI-------------------FGRLRILVVAYDTSRMIVSRVNVDVAENV-YKVA

Query:  SKIVGVRVQNVVDPEIVALLDDS-----------------VELGL-------------------------------------------------------
        SK VGV+VQN +DPEI ALLDD                  V+  L                                                       
Subjt:  SKIVGVRVQNVVDPEIVALLDDS-----------------VELGL-------------------------------------------------------

Query:  -----------------ASSNSGGIDCDE--PCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEILQSASDVIHRCMEYA
                         AS + GGIDCDE    +A+E ESLAQKL HAL +HSKDDL+L+QG KAPA+ILSGK G  D+E+LQSASDVIHRCMEYA
Subjt:  -----------------ASSNSGGIDCDE--PCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEILQSASDVIHRCMEYA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G49990.1 unknown protein5.5e-0838.1Show/hide
Query:  TSSPENDRRKILELEFPDDGYNIVCCI-------------------FGRLRILVVAYDTSRMIVS-RVNVDVAEN--VYKVASKIVGVRVQNVVDPEIVA
        +S P + R++ILEL +PDDGYN +  +                     +L   V AYD SR+ +S  VN +  +N  +Y VASK V V+VQ  +DPE+ A
Subjt:  TSSPENDRRKILELEFPDDGYNIVCCI-------------------FGRLRILVVAYDTSRMIVS-RVNVDVAEN--VYKVASKIVGVRVQNVVDPEIVA

Query:  LLDDS
        LL++S
Subjt:  LLDDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTATGATGAGGAGAATGGAGGTTTTAGGTCATGTATGCAGTCTCGTGGGGAAGTTGGTGGAACGTCGTCACCAGAAAATGATAGAAGAAAGATTTTAGAGCTTGA
GTTCCCCGATGATGGCTACAATATTGTTTGTTGCATCTTCGGGAGATTAAGAATACTGGTGGTGGCTTATGACACCTCCAGAATGATTGTTTCTAGAGTGAATGTTGATG
TCGCTGAGAACGTCTACAAAGTTGCTTCCAAGATTGTTGGAGTCAGGGTTCAAAATGTTGTTGACCCTGAAATAGTTGCACTTCTTGATGACTCTGTTGAACTAGGACTA
GCATCTAGCAACAGTGGTGGCATTGATTGTGACGAACCCTGTATAGCCAAAGAGGACGAGTCCCTTGCCCAAAAGCTCAATCATGCCCTTAGCAATCATAGTAAGGATGA
TTTGGAGCTTGAGCAAGGATGTAAGGCTCCAGCGAATATATTGAGTGGTAAAGGAGTAGAAGATAAAGAGATTTTACAGTCTGCCAGTGATGTAATTCACCGGTGTATGG
AATATGCATGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATTATGATGAGGAGAATGGAGGTTTTAGGTCATGTATGCAGTCTCGTGGGGAAGTTGGTGGAACGTCGTCACCAGAAAATGATAGAAGAAAGATTTTAGAGCTTGA
GTTCCCCGATGATGGCTACAATATTGTTTGTTGCATCTTCGGGAGATTAAGAATACTGGTGGTGGCTTATGACACCTCCAGAATGATTGTTTCTAGAGTGAATGTTGATG
TCGCTGAGAACGTCTACAAAGTTGCTTCCAAGATTGTTGGAGTCAGGGTTCAAAATGTTGTTGACCCTGAAATAGTTGCACTTCTTGATGACTCTGTTGAACTAGGACTA
GCATCTAGCAACAGTGGTGGCATTGATTGTGACGAACCCTGTATAGCCAAAGAGGACGAGTCCCTTGCCCAAAAGCTCAATCATGCCCTTAGCAATCATAGTAAGGATGA
TTTGGAGCTTGAGCAAGGATGTAAGGCTCCAGCGAATATATTGAGTGGTAAAGGAGTAGAAGATAAAGAGATTTTACAGTCTGCCAGTGATGTAATTCACCGGTGTATGG
AATATGCATGCTGA
Protein sequenceShow/hide protein sequence
MNYDEENGGFRSCMQSRGEVGGTSSPENDRRKILELEFPDDGYNIVCCIFGRLRILVVAYDTSRMIVSRVNVDVAENVYKVASKIVGVRVQNVVDPEIVALLDDSVELGL
ASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGKGVEDKEILQSASDVIHRCMEYAC