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Pay0011897 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0011897
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Descriptionprotein RADIALIS-like 2
Genome locationchr11:4210885..4213287
RNA-Seq ExpressionPay0011897
SyntenyPay0011897
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571113.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia]6.4e-3082.56Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSS
        MAS+SSS H   SSSWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD LVEDVKHIESG VPFP Y+S++S S
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSS

XP_004148844.1 transcription factor RADIALIS [Cucumis sativus]5.6e-3492.94Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSS
        MASISSS     SSSWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSS
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSS

XP_008460938.1 PREDICTED: protein RADIALIS-like 2 [Cucumis melo]1.2e-3997.75Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSPPP
        MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSS  P
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSPPP

XP_023513343.1 protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo]4.9e-3082.56Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSS
        MAS+SSS H   SSSWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD LVEDVKHIESG VPFP Y+S++S+S
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSS

XP_038902123.1 protein RADIALIS-like 2 [Benincasa hispida]2.6e-3189.29Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSS
        MASI SSSHD  S SWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKT DEVKRHFD LVEDVKHIESGRVPFP YTS+S+
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSS

TrEMBL top hitse value%identityAlignment
A0A0A0LL58 MYB transcription factor MYB1422.7e-3492.94Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSS
        MASISSS     SSSWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSS
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSS

A0A1S3CDK8 protein RADIALIS-like 25.6e-4097.75Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSPPP
        MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSS  P
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSPPP

A0A6J1FXX9 protein RADIALIS-like 24.5e-2980.23Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSS
        MAS++SS     SSSWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD LVEDVKHIESG VPFP Y+S++S+S
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSS

A0A6J1G543 transcription factor RADIALIS-like1.9e-2782.76Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSP
        MASI SSSHD  S+SW+PNQNKAFE ALAVFDKDTPDRWLNVA AV G KT DEVKRHF+ LVEDVKHIESG VPFP YTSSSSS+P
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSP

A0A6J1JBS7 protein RADIALIS-like 25.8e-2979.07Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSS
        MAS+SSS H   SSSWTP +NKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD LVEDVKHIE G VPFP Y+S++S++
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSS

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 18.1e-2060.26Show/hide
Query:  SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSS
        SSS    +S SWT  QNKAFE+ALA +D+DTP+RW NVA  V GGKT +EVKRH++ LV+D+  IE+G VPFP Y +S
Subjt:  SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSS

Q1A173 Protein RADIALIS-like 61.3e-2064.2Show/hide
Query:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSS
        +S+  S+ S WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D LVED+ +IE+GRVP P Y +  S+S
Subjt:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSS

Q58FS3 Transcription factor RADIALIS5.6e-2164.29Show/hide
Query:  WTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSS
        W+  +NKAFERALAV+DKDTPDRW NVA AV  G+TP+EVK+H++ LVED+K+IESG+VPFP Y ++  +
Subjt:  WTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSS

Q8GW75 Protein RADIALIS-like 56.2e-2067.57Show/hide
Query:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKY
        +SS  S+SSSWT  QNK FERALAV+DKDTPDRW NVA AV G K+ +EVKRH+D LVED+ +IE   VP PKY
Subjt:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKY

Q9SIJ5 Protein RADIALIS-like 22.5e-2162.79Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSS
        MAS S SS+   S SWT  QNKAFERALAV+D+DTPDRW NVA AV GGKTP+E KR +D LV D++ IE+G VPFP Y +++ +S
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSS

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 54.4e-2167.57Show/hide
Query:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKY
        +SS  S+SSSWT  QNK FERALAV+DKDTPDRW NVA AV G K+ +EVKRH+D LVED+ +IE   VP PKY
Subjt:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKY

AT1G75250.1 RAD-like 68.9e-2264.2Show/hide
Query:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSS
        +S+  S+ S WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D LVED+ +IE+GRVP P Y +  S+S
Subjt:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSS

AT1G75250.2 RAD-like 68.9e-2264.2Show/hide
Query:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSS
        +S+  S+ S WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D LVED+ +IE+GRVP P Y +  S+S
Subjt:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSS

AT2G21650.1 Homeodomain-like superfamily protein1.8e-2262.79Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSS
        MAS S SS+   S SWT  QNKAFERALAV+D+DTPDRW NVA AV GGKTP+E KR +D LV D++ IE+G VPFP Y +++ +S
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSS

AT4G39250.1 RAD-like 15.8e-2160.26Show/hide
Query:  SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSS
        SSS    +S SWT  QNKAFE+ALA +D+DTP+RW NVA  V GGKT +EVKRH++ LV+D+  IE+G VPFP Y +S
Subjt:  SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATTTCCTCTTCCTCTCACGACTCTGCCTCCTCTTCTTGGACTCCTAACCAAAACAAAGCCTTCGAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGA
TCGCTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCTGACGAAGTCAAGCGGCATTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGCG
TTCCTTTCCCTAAATACACCTCCTCCTCCTCCTCCTCTCCTCCTCCTCCGCCCCTAGAACCTCCAATAATGCTAACATCAAAGACCAAGAACAAAGGATGGAATCAGAAA
CTCCATTAA
mRNA sequenceShow/hide mRNA sequence
AAATCATTCAAAATAATTTCTCACTCTCCCTTTTTCCGAAGATTTTCCCTCTCTCTGCCCCCACTTATAAAATCCCTTCCCCTTCTCCATACTCTTTCTTCTTCACCCCT
TTAAATTAATTTTAATTACCAGTTTTTGCCCCTCAACAATGGCTTCCATTTCCTCTTCCTCTCACGACTCTGCCTCCTCTTCTTGGACTCCTAACCAAAACAAAGCCTTC
GAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGATCGCTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCTGACGAAGTCAAGCGGCATTTCGACCG
TCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGCGTTCCTTTCCCTAAATACACCTCCTCCTCCTCCTCCTCTCCTCCTCCTCCGCCCCTAGAACCTCCAATAATGC
TAACATCAAAGACCAAGAACAAAGGATGGAATCAGAAACTCCATTAAATTGGTTAAAATTGAAGGCAAATGATTTAAAGAAAAAATGAAAAAGCTGATAGACTGGTTGCT
GTTTTGCCCCTAACAGATAACAAAAAGATTAGTGTAGCAAATTTGCAATTTATGTGTTTTTTTTTTCTTCCTCTTGAAAGTGTATTTGCCCAACTAAAAAGCTAATCAAT
GT
Protein sequenceShow/hide protein sequence
MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSPPPPPLEPPIMLTSKTKNKGWNQK
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