CuGenDBv2

Gene ID	Pay0011900
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ribosomal protein
Genome location	chr02:14924422..14926669
RNA-Seq Expression	Pay0011900
Synteny	Pay0011900
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000473 - Ribosomal protein L36 IPR035977 - Ribosomal protein L36 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7023520.1 rpmJ, partial [Cucurbita argyrosperma subsp. argyrosperma]

9.4e-41

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLST A EGPSP LF  +EVKQEILPS  SR GLASL+PQK+EPTML+GWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN

XP_004150587.2 uncharacterized protein LOC101223220 [Cucumis sativus]

2.8e-45

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFA EGPSPSLFSRTEVKQEILPSQ  R GLASLIPQKNEPTM LGWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN

XP_008443993.2 PREDICTED: uncharacterized protein LOC103487446 [Cucumis melo]

5.5e-49

100

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN

XP_022144930.1 uncharacterized protein LOC111014487 [Momordica charantia]

1.1e-41

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLSTFA EGPSP LFSR+EVKQEILPS   R GLASLIPQK+EPT + GWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN

XP_038879717.1 uncharacterized protein LOC120071478 [Benincasa hispida]

2.9e-42

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLSTFA EGP PSLFSR+EVKQE+LPS  SR GLASLIPQK+EPTMLLGWRMGLASILLKK N
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B8W2 Ribosomal protein

2.7e-49

100

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN

A0A5A7U4L3 Ribosomal protein

2.7e-49

100

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN

A0A6J1CT08 Ribosomal protein

5.4e-42

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLSTFA EGPSP LFSR+EVKQEILPS   R GLASLIPQK+EPT + GWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN

A0A6J1EZS5 Ribosomal protein

5.9e-41

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTV+R+GRVYIYCS+NPKHKQRQGLSTFA E PSPSLFSR+EVKQEILPS  SR GLASLIPQK+EPTML GWRMGLASIL KK N
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN

A0A6J1JBN8 Ribosomal protein

7.7e-41

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLST A EGPSP LF  +EVKQEILPS  SR GLASL+PQK+EPTML GWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN

SwissProt top hits

e value

%identity

Alignment

A5VLI2 50S ribosomal protein L36

8.9e-10

76.32

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ VKR GRV + CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG

B2G8V5 50S ribosomal protein L36

8.9e-10

76.32

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ VKR GRV + CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG

B3WAJ5 50S ribosomal protein L36

3.1e-10

78.95

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ V+RKGRV I CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG

Q035A6 50S ribosomal protein L36

3.1e-10

78.95

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ V+RKGRV I CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG

Q03PY0 50S ribosomal protein L36

1.2e-09

73.68

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG
        MKVR SVK MCE C+ +KRKGRV + CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG

Arabidopsis top hits

e value

%identity

Alignment

AT5G20180.1 Ribosomal protein L36

6.1e-30

65.05

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPS-LFSRTEVKQEI--LPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLK
        MKVRSSVKKMCEFC+TVKR+GRVY+ CSSNPKHKQRQG S+FA EG +PS LF+     QE+  LP QG   GLASL+ ++  PT   GWR GLASIL K
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPS-LFSRTEVKQEI--LPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLK

Query:  KHN
        + N
Subjt:  KHN

AT5G20180.2 Ribosomal protein L36

6.1e-30

65.05

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPS-LFSRTEVKQEI--LPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLK
        MKVRSSVKKMCEFC+TVKR+GRVY+ CSSNPKHKQRQG S+FA EG +PS LF+     QE+  LP QG   GLASL+ ++  PT   GWR GLASIL K
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPS-LFSRTEVKQEI--LPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLK

Query:  KHN
        + N
Subjt:  KHN

ATCG00760.1 ribosomal protein L36

3.8e-08

60.53

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG
        MK+R+SV+K+CE CR ++R+GR+ + C SNP+HKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG

Sequences

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CDS sequence

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ATGAAAGTCCGTTCTTCGGTGAAAAAGATGTGCGAATTTTGTAGGACAGTGAAGCGTAAAGGCCGAGTATATATATACTGCTCATCTAATCCCAAACACAAGCAACGCCA
GGGCCTGTCTACATTTGCATGTGAAGGTCCTTCTCCTTCCTTGTTCTCAAGAACCGAGGTGAAGCAAGAGATTCTTCCCAGTCAAGGCTCGCGAATGGGGCTGGCTTCTC
TCATCCCCCAAAAGAATGAGCCAACAATGTTGCTTGGTTGGAGAATGGGTCTGGCTTCAATCCTGTTGAAGAAACACAATTAG

mRNA sequence

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GGATACGGAAGAACAAAGTTCCATATTCCGTACTGCTTTTAGTCGTTCATCTCAGCTGCTGACCGTCGTTCTCGATCCGAGGGTATTTGCTAAGAAATCCTTCATTTTTT
CACCATGAAAGTCCGTTCTTCGGTGAAAAAGATGTGCGAATTTTGTAGGACAGTGAAGCGTAAAGGCCGAGTATATATATACTGCTCATCTAATCCCAAACACAAGCAAC
GCCAGGGCCTGTCTACATTTGCATGTGAAGGTCCTTCTCCTTCCTTGTTCTCAAGAACCGAGGTGAAGCAAGAGATTCTTCCCAGTCAAGGCTCGCGAATGGGGCTGGCT
TCTCTCATCCCCCAAAAGAATGAGCCAACAATGTTGCTTGGTTGGAGAATGGGTCTGGCTTCAATCCTGTTGAAGAAACACAATTAGCTTAGTAATAAACAAAAAGGAAG
AAAGAATATTAGTCATTGGTTTCTCTTCGACCTTTGATTGACAATACCAGTATTTTCAACTAGGATTCTGCTCCTAAAAAGAAATAAGCACTGCTGCTCTGAGTTTTGTT
CGCTATTTGAGTTGGTTTTGATATTTAGAATTGGAGGAAGAGAAGGTGTTACATTCAATATCATAATTGTGTTTATTGCTAGGTTGTTTTATTTTTAGATCTGCTAGCCA
TCTATAATGTTGTGATTTTCAATCCTTAATTTTCTTCCAAGTAATTCTGAAATCCTCAAAAATATAATTAGTTAAATTGTATGCTAACAAGTTGGGAAAGTTCAAATGCT
ATTTAAGTCTCAGTTTCAATATCC

Protein sequence

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MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQEILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN

Pay0011900 (gene) of Melon (Payzawat) v1 genome