; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Pay0012018 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0012018
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionGlycine-rich RNA-binding protein
Genome locationchr12:26748571..26750182
RNA-Seq ExpressionPay0012018
SyntenyPay0012018
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ98936.1 glycine-rich RNA-binding protein 3 [Cucumis melo var. makuwa]5.0e-3765.22Show/hide
Query:  VVNMAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS-------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSA
        VVNMAFLSKVGK+FS  SASGI S LQP   S+F+T+R MS       GLSY++DD  L   F++YGEVVEA+ I DR+SGR +G+GFVTF A+ +ASSA
Subjt:  VVNMAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS-------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSA

Query:  IQALNGKDLNGRRIRCDFATERAGRRGGYGGGGGYGGG
        IQAL+G+DL+GRRIRC +ATER+   GGYGGGGGYGGG
Subjt:  IQALNGKDLNGRRIRCDFATERAGRRGGYGGGGGYGGG

XP_004137435.1 glycine-rich RNA-binding protein 3, mitochondrial [Cucumis sativus]9.2e-3967.63Show/hide
Query:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS-------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQA
        MAFLSKVGKIFSQ SASGI S  QPS LS+F+TLRFMS       GLSY +DD  L  AF++YGEVVEA+ IMDR++GR +G+GFVTF A+ +ASSAIQA
Subjt:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS-------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQA

Query:  LNGKDLNGRRIRCDFATERA----GRRGGYGGGGGYGGG
        L+G+DL+GRRIRC +AT+RA    G  GGYGGGGGYGGG
Subjt:  LNGKDLNGRRIRCDFATERA----GRRGGYGGGGGYGGG

XP_004137437.1 glycine-rich RNA-binding protein 3, mitochondrial [Cucumis sativus]6.0e-4674.47Show/hide
Query:  VVNMAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS-------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSA
        VVNMAFLS+VGKIFSQ SASGIGS LQPSKLSIFRTLRF+S       GLSYNSDDLTLRVAFS+YGEVVEA+ +MD ++GRCKG+GFVTFSA  EASSA
Subjt:  VVNMAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS-------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSA

Query:  IQALNGKDLNGRRIRCDFATERAGRRGGYGGGGGYGGGDKN
        I+AL+GKDL GRRIRC++A E+  R GG  G   YGGGDKN
Subjt:  IQALNGKDLNGRRIRCDFATERAGRRGGYGGGGGYGGGDKN

XP_008450062.1 PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucumis melo]2.9e-6192.91Show/hide
Query:  VVNMAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS-------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSA
        VVNMAFLS+VGKIFSQCSASGIGSRLQPSKLSIF+TLRFMS       GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSA
Subjt:  VVNMAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS-------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSA

Query:  IQALNGKDLNGRRIRCDFATERAGRRGGYGGGGGYGGGDKN
        IQALNGKDLNGRRIRCD ATERAGRRGGYGGGGGYGGGDKN
Subjt:  IQALNGKDLNGRRIRCDFATERAGRRGGYGGGGGYGGGDKN

XP_016900163.1 PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like isoform X2 [Cucumis melo]1.2e-5992.75Show/hide
Query:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS-------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQA
        MAFLS+VGKIFSQCSASGIGSRLQPSKLSIF+TLRFMS       GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQA
Subjt:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS-------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQA

Query:  LNGKDLNGRRIRCDFATERAGRRGGYGGGGGYGGGDKN
        LNGKDLNGRRIRCD ATERAGRRGGYGGGGGYGGGDKN
Subjt:  LNGKDLNGRRIRCDFATERAGRRGGYGGGGGYGGGDKN

TrEMBL top hitse value%identityAlignment
A0A0A0LQL8 RRM domain-containing protein4.5e-3967.63Show/hide
Query:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS-------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQA
        MAFLSKVGKIFSQ SASGI S  QPS LS+F+TLRFMS       GLSY +DD  L  AF++YGEVVEA+ IMDR++GR +G+GFVTF A+ +ASSAIQA
Subjt:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS-------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQA

Query:  LNGKDLNGRRIRCDFATERA----GRRGGYGGGGGYGGG
        L+G+DL+GRRIRC +AT+RA    G  GGYGGGGGYGGG
Subjt:  LNGKDLNGRRIRCDFATERA----GRRGGYGGGGGYGGG

A0A0A0LTH6 Glycine-rich RNA-binding protein1.2e-4473.91Show/hide
Query:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS-------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQA
        MAFLS+VGKIFSQ SASGIGS LQPSKLSIFRTLRF+S       GLSYNSDDLTLRVAFS+YGEVVEA+ +MD ++GRCKG+GFVTFSA  EASSAI+A
Subjt:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS-------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQA

Query:  LNGKDLNGRRIRCDFATERAGRRGGYGGGGGYGGGDKN
        L+GKDL GRRIRC++A E+  R GG  G   YGGGDKN
Subjt:  LNGKDLNGRRIRCDFATERAGRRGGYGGGGGYGGGDKN

A0A1S3BP28 glycine-rich RNA-binding protein 3, mitochondrial-like isoform X11.4e-6192.91Show/hide
Query:  VVNMAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS-------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSA
        VVNMAFLS+VGKIFSQCSASGIGSRLQPSKLSIF+TLRFMS       GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSA
Subjt:  VVNMAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS-------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSA

Query:  IQALNGKDLNGRRIRCDFATERAGRRGGYGGGGGYGGGDKN
        IQALNGKDLNGRRIRCD ATERAGRRGGYGGGGGYGGGDKN
Subjt:  IQALNGKDLNGRRIRCDFATERAGRRGGYGGGGGYGGGDKN

A0A1S4DW21 glycine-rich RNA-binding protein 3, mitochondrial-like isoform X26.0e-6092.75Show/hide
Query:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS-------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQA
        MAFLS+VGKIFSQCSASGIGSRLQPSKLSIF+TLRFMS       GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQA
Subjt:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS-------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQA

Query:  LNGKDLNGRRIRCDFATERAGRRGGYGGGGGYGGGDKN
        LNGKDLNGRRIRCD ATERAGRRGGYGGGGGYGGGDKN
Subjt:  LNGKDLNGRRIRCDFATERAGRRGGYGGGGGYGGGDKN

A0A5D3BKP6 Glycine-rich RNA-binding protein 36.0e-6092.75Show/hide
Query:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS-------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQA
        MAFLS+VGKIFSQCSASGIGSRLQPSKLSIF+TLRFMS       GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQA
Subjt:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS-------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQA

Query:  LNGKDLNGRRIRCDFATERAGRRGGYGGGGGYGGGDKN
        LNGKDLNGRRIRCD ATERAGRRGGYGGGGGYGGGDKN
Subjt:  LNGKDLNGRRIRCDFATERAGRRGGYGGGGGYGGGDKN

SwissProt top hitse value%identityAlignment
P49310 Glycine-rich RNA-binding protein GRP1A6.0e-1749.51Show/hide
Query:  FMSGLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDFATERA--------GRRGGY--GGGGGY
        F+ GL++ +DD  L  AFSQYGEV+++K I DRE+GR +G+GFVTF        AI+ +NG+DL+GR I  + A  R         G  GGY  GGGGGY
Subjt:  FMSGLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRIRCDFATERA--------GRRGGY--GGGGGY

Query:  GGG
        GGG
Subjt:  GGG

Q9C909 Glycine-rich RNA-binding protein 5, mitochondrial2.1e-2551.88Show/hide
Query:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLR-FMSGLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDL
        MAFLSKVG++FSQ S+    S      +    + + F+ G+SY++D+  LR AFS+YGEVV+AK I+DRE+GR +G+ FVTF++  EAS+A+Q L+G+DL
Subjt:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLR-FMSGLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDL

Query:  NGRRIRCDFATERA---GRRGGYGGGGGYGGGD
        +GRRIR ++ATER    G RG  G GGGYG  D
Subjt:  NGRRIRCDFATERA---GRRGGYGGGGGYGGGD

Q9FNR1 Glycine-rich RNA-binding protein 3, mitochondrial1.2e-2544.52Show/hide
Query:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLR-------FMSGLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQA
        MAFLSK G I  Q +   + +++  S  S+F+ +R       F+ G++Y+ D+ +LR AF++YGEVV+ + I+DRE+GR +G+GFVTF+++  ASSAIQA
Subjt:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLR-------FMSGLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQA

Query:  LNGKDLNGRRIRCDFATER-----------AGRRGGYGGGGGYGGG
        L+G+DL+GR ++ ++A +R            G  GGYGG GGYGGG
Subjt:  LNGKDLNGRRIRCDFATER-----------AGRRGGYGGGGGYGGG

Q9LIS2 Glycine-rich RNA-binding protein 4, mitochondrial8.1e-2245.93Show/hide
Query:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQAL
        MAF +K+  I  Q    G+         S+  +LR+MS      GLS+ +DD +L+ AF+ +GEV EA  I DRE+GR +G+GFV+FS    A++AI+ +
Subjt:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQAL

Query:  NGKDLNGRRIRCDFATERAGR-RGGYGGGGGYGGG
        +GK+LNGR+IR + ATER+   R  +GGGGGYGGG
Subjt:  NGKDLNGRRIRCDFATERAGR-RGGYGGGGGYGGG

Q9SVM8 Glycine-rich RNA-binding protein 2, mitochondrial6.9e-2143.85Show/hide
Query:  MAFLSKVGKIFSQ--CSASGIGSRLQPSKLSIFRTLRFMSGLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKD
        MAF +K+G +  Q   S   +        L +  T  F+ GLS+ +DD +LR AF+ +G+VV+AK I+DRE+GR +G+GFV F+    A++AI  ++GK+
Subjt:  MAFLSKVGKIFSQ--CSASGIGSRLQPSKLSIFRTLRFMSGLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKD

Query:  LNGRRIRCDFATERAGRRGGYGGGGGYGGG
        LNGR IR + A +R      YGGGGGY GG
Subjt:  LNGRRIRCDFATERAGRRGGYGGGGGYGGG

Arabidopsis top hitse value%identityAlignment
AT1G74230.1 glycine-rich RNA-binding protein 51.5e-2651.88Show/hide
Query:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLR-FMSGLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDL
        MAFLSKVG++FSQ S+    S      +    + + F+ G+SY++D+  LR AFS+YGEVV+AK I+DRE+GR +G+ FVTF++  EAS+A+Q L+G+DL
Subjt:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLR-FMSGLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDL

Query:  NGRRIRCDFATERA---GRRGGYGGGGGYGGGD
        +GRRIR ++ATER    G RG  G GGGYG  D
Subjt:  NGRRIRCDFATERA---GRRGGYGGGGGYGGGD

AT3G23830.1 glycine-rich RNA-binding protein 45.8e-2345.93Show/hide
Query:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQAL
        MAF +K+  I  Q    G+         S+  +LR+MS      GLS+ +DD +L+ AF+ +GEV EA  I DRE+GR +G+GFV+FS    A++AI+ +
Subjt:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQAL

Query:  NGKDLNGRRIRCDFATERAGR-RGGYGGGGGYGGG
        +GK+LNGR+IR + ATER+   R  +GGGGGYGGG
Subjt:  NGKDLNGRRIRCDFATERAGR-RGGYGGGGGYGGG

AT3G23830.2 glycine-rich RNA-binding protein 45.8e-2345.93Show/hide
Query:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQAL
        MAF +K+  I  Q    G+         S+  +LR+MS      GLS+ +DD +L+ AF+ +GEV EA  I DRE+GR +G+GFV+FS    A++AI+ +
Subjt:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMS------GLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQAL

Query:  NGKDLNGRRIRCDFATERAGR-RGGYGGGGGYGGG
        +GK+LNGR+IR + ATER+   R  +GGGGGYGGG
Subjt:  NGKDLNGRRIRCDFATERAGR-RGGYGGGGGYGGG

AT4G13850.1 glycine-rich RNA-binding protein 24.9e-2243.85Show/hide
Query:  MAFLSKVGKIFSQ--CSASGIGSRLQPSKLSIFRTLRFMSGLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKD
        MAF +K+G +  Q   S   +        L +  T  F+ GLS+ +DD +LR AF+ +G+VV+AK I+DRE+GR +G+GFV F+    A++AI  ++GK+
Subjt:  MAFLSKVGKIFSQ--CSASGIGSRLQPSKLSIFRTLRFMSGLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKD

Query:  LNGRRIRCDFATERAGRRGGYGGGGGYGGG
        LNGR IR + A +R      YGGGGGY GG
Subjt:  LNGRRIRCDFATERAGRRGGYGGGGGYGGG

AT5G61030.1 glycine-rich RNA-binding protein 38.6e-2744.52Show/hide
Query:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLR-------FMSGLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQA
        MAFLSK G I  Q +   + +++  S  S+F+ +R       F+ G++Y+ D+ +LR AF++YGEVV+ + I+DRE+GR +G+GFVTF+++  ASSAIQA
Subjt:  MAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLR-------FMSGLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQA

Query:  LNGKDLNGRRIRCDFATER-----------AGRRGGYGGGGGYGGG
        L+G+DL+GR ++ ++A +R            G  GGYGG GGYGGG
Subjt:  LNGKDLNGRRIRCDFATER-----------AGRRGGYGGGGGYGGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACAATGTCGTTAATATGGCTTTTCTCAGTAAAGTTGGAAAAATATTTAGTCAGTGTTCTGCATCAGGAATCGGTTCACGTTTGCAACCTTCCAAGCTGTCTATCTT
TCGAACTCTTAGATTCATGTCGGGCCTCTCATACAACTCCGATGATCTAACTCTGAGGGTAGCGTTCAGCCAGTATGGGGAAGTAGTTGAAGCGAAAGCGATAATGGATC
GTGAGTCTGGTAGATGCAAAGGTTACGGGTTTGTCACTTTCAGTGCCAATGCAGAAGCTTCTAGTGCTATTCAAGCTTTGAATGGAAAGGATCTCAATGGTCGTCGCATT
AGATGCGACTTCGCAACTGAAAGGGCTGGCCGCCGTGGCGGCTATGGCGGCGGCGGCGGTTATGGTGGTGGGGACAAAAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCACAATGTCGTTAATATGGCTTTTCTCAGTAAAGTTGGAAAAATATTTAGTCAGTGTTCTGCATCAGGAATCGGTTCACGTTTGCAACCTTCCAAGCTGTCTATCTT
TCGAACTCTTAGATTCATGTCGGGCCTCTCATACAACTCCGATGATCTAACTCTGAGGGTAGCGTTCAGCCAGTATGGGGAAGTAGTTGAAGCGAAAGCGATAATGGATC
GTGAGTCTGGTAGATGCAAAGGTTACGGGTTTGTCACTTTCAGTGCCAATGCAGAAGCTTCTAGTGCTATTCAAGCTTTGAATGGAAAGGATCTCAATGGTCGTCGCATT
AGATGCGACTTCGCAACTGAAAGGGCTGGCCGCCGTGGCGGCTATGGCGGCGGCGGCGGTTATGGTGGTGGGGACAAAAACTGA
Protein sequenceShow/hide protein sequence
MHNVVNMAFLSKVGKIFSQCSASGIGSRLQPSKLSIFRTLRFMSGLSYNSDDLTLRVAFSQYGEVVEAKAIMDRESGRCKGYGFVTFSANAEASSAIQALNGKDLNGRRI
RCDFATERAGRRGGYGGGGGYGGGDKN