; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Pay0012036 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0012036
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRibonuclease H
Genome locationchr11:19690435..19695507
RNA-Seq ExpressionPay0012036
SyntenyPay0012036
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037621.1 uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]1.3e-8682.18Show/hide
Query:  MRIDFPDENIFLIEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKE
        MRIDFPD+NIFL+EKNARDHETWTMLFDGASNELGH IGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSM VIHQVKE
Subjt:  MRIDFPDENIFLIEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKE

Query:  EWETRDAKLVPYSQSLQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAVMFDLNLEFELHPIQITKRDVSAYCM
        EWETR AKLVPYSQ                            YVTKLSQNFEKISFDHV REDNRMADALAT+AVMFDLNLEFELHPIQITKRDV AYCM
Subjt:  EWETRDAKLVPYSQSLQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAVMFDLNLEFELHPIQITKRDVSAYCM

Query:  NV
        NV
Subjt:  NV

KAA0046213.1 uncharacterized protein E6C27_scaffold284G00010 [Cucumis melo var. makuwa]1.0e-8681.68Show/hide
Query:  MRIDFPDENIFLIEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKE
        MRIDFPD+NIFL+EKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGL+VACDMSIKKLKVLGDSM VIHQVKE
Subjt:  MRIDFPDENIFLIEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKE

Query:  EWETRDAKLVPYSQSLQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAVMFDLNLEFELHPIQITKRDVSAYCM
        EWETR AKLVPYSQ                            YVTKLSQNFEKISFDHV REDNRMADALAT+A+MFDLNLEFELHPIQITKRDV AYCM
Subjt:  EWETRDAKLVPYSQSLQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAVMFDLNLEFELHPIQITKRDVSAYCM

Query:  NV
        NV
Subjt:  NV

KAA0055609.1 uncharacterized protein E6C27_scaffold222G00930 [Cucumis melo var. makuwa]2.3e-8681.68Show/hide
Query:  MRIDFPDENIFLIEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKE
        MRIDFP+ENIFL+EKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSM VIHQVKE
Subjt:  MRIDFPDENIFLIEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKE

Query:  EWETRDAKLVPYSQSLQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAVMFDLNLEFELHPIQITKRDVSAYCM
        EWETRDAKLVPYSQ                            YVTKLSQNFEKI FDHV RE+N+MADALAT+AVMFDLNLEFELHPIQITKRDV AYCM
Subjt:  EWETRDAKLVPYSQSLQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAVMFDLNLEFELHPIQITKRDVSAYCM

Query:  NV
        NV
Subjt:  NV

TYK23952.1 putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]5.8e-9085.15Show/hide
Query:  MRIDFPDENIFLIEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKE
        MRIDFPDENIFLIEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLT KLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKE
Subjt:  MRIDFPDENIFLIEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKE

Query:  EWETRDAKLVPYSQSLQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAVMFDLNLEFELHPIQITKRDVSAYCM
        EWETRDAKLVPY Q                            YVTKLSQNFEKISFDHVSREDNRMADALATMAVMFDLNLEFELHPIQITKRDVSAYCM
Subjt:  EWETRDAKLVPYSQSLQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAVMFDLNLEFELHPIQITKRDVSAYCM

Query:  NV
        NV
Subjt:  NV

TYK24459.1 uncharacterized protein E5676_scaffold717G00160 [Cucumis melo var. makuwa]2.4e-8883.17Show/hide
Query:  MRIDFPDENIFLIEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKE
        MRIDFPD+NIFL+EKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSM VIHQVKE
Subjt:  MRIDFPDENIFLIEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKE

Query:  EWETRDAKLVPYSQSLQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAVMFDLNLEFELHPIQITKRDVSAYCM
        EWETRDAKLVPYSQ                            YVTKLSQNFEKISFDHV REDNRMADALAT+AVMFDLNLEFELHPIQITKRDV AYCM
Subjt:  EWETRDAKLVPYSQSLQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAVMFDLNLEFELHPIQITKRDVSAYCM

Query:  NV
        NV
Subjt:  NV

TrEMBL top hitse value%identityAlignment
A0A5A7T7R4 Ribonuclease H6.5e-8782.18Show/hide
Query:  MRIDFPDENIFLIEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKE
        MRIDFPD+NIFL+EKNARDHETWTMLFDGASNELGH IGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSM VIHQVKE
Subjt:  MRIDFPDENIFLIEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKE

Query:  EWETRDAKLVPYSQSLQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAVMFDLNLEFELHPIQITKRDVSAYCM
        EWETR AKLVPYSQ                            YVTKLSQNFEKISFDHV REDNRMADALAT+AVMFDLNLEFELHPIQITKRDV AYCM
Subjt:  EWETRDAKLVPYSQSLQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAVMFDLNLEFELHPIQITKRDVSAYCM

Query:  NV
        NV
Subjt:  NV

A0A5A7TRL7 Ribonuclease H5.0e-8781.68Show/hide
Query:  MRIDFPDENIFLIEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKE
        MRIDFPD+NIFL+EKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGL+VACDMSIKKLKVLGDSM VIHQVKE
Subjt:  MRIDFPDENIFLIEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKE

Query:  EWETRDAKLVPYSQSLQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAVMFDLNLEFELHPIQITKRDVSAYCM
        EWETR AKLVPYSQ                            YVTKLSQNFEKISFDHV REDNRMADALAT+A+MFDLNLEFELHPIQITKRDV AYCM
Subjt:  EWETRDAKLVPYSQSLQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAVMFDLNLEFELHPIQITKRDVSAYCM

Query:  NV
        NV
Subjt:  NV

A0A5A7UQ60 Ribonuclease H1.1e-8681.68Show/hide
Query:  MRIDFPDENIFLIEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKE
        MRIDFP+ENIFL+EKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSM VIHQVKE
Subjt:  MRIDFPDENIFLIEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKE

Query:  EWETRDAKLVPYSQSLQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAVMFDLNLEFELHPIQITKRDVSAYCM
        EWETRDAKLVPYSQ                            YVTKLSQNFEKI FDHV RE+N+MADALAT+AVMFDLNLEFELHPIQITKRDV AYCM
Subjt:  EWETRDAKLVPYSQSLQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAVMFDLNLEFELHPIQITKRDVSAYCM

Query:  NV
        NV
Subjt:  NV

A0A5D3DKC6 Ribonuclease H2.8e-9085.15Show/hide
Query:  MRIDFPDENIFLIEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKE
        MRIDFPDENIFLIEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLT KLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKE
Subjt:  MRIDFPDENIFLIEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKE

Query:  EWETRDAKLVPYSQSLQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAVMFDLNLEFELHPIQITKRDVSAYCM
        EWETRDAKLVPY Q                            YVTKLSQNFEKISFDHVSREDNRMADALATMAVMFDLNLEFELHPIQITKRDVSAYCM
Subjt:  EWETRDAKLVPYSQSLQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAVMFDLNLEFELHPIQITKRDVSAYCM

Query:  NV
        NV
Subjt:  NV

A0A5D3DMD2 Ribonuclease H1.2e-8883.17Show/hide
Query:  MRIDFPDENIFLIEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKE
        MRIDFPD+NIFL+EKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSM VIHQVKE
Subjt:  MRIDFPDENIFLIEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKE

Query:  EWETRDAKLVPYSQSLQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAVMFDLNLEFELHPIQITKRDVSAYCM
        EWETRDAKLVPYSQ                            YVTKLSQNFEKISFDHV REDNRMADALAT+AVMFDLNLEFELHPIQITKRDV AYCM
Subjt:  EWETRDAKLVPYSQSLQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAVMFDLNLEFELHPIQITKRDVSAYCM

Query:  NV
        NV
Subjt:  NV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G24090.1 RNase H family protein2.3e-0735.64Show/hide
Query:  PDENIFLIEKNAR-DHETWTMLFDGAS--NELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKEEW
        P E +  +E +A    ET  + FDGAS  N    G   VL + +G +     +     T+N AEY A I+GL+ A +   K +KV GDS  V  Q+K +W
Subjt:  PDENIFLIEKNAR-DHETWTMLFDGAS--NELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKEEW

Query:  E
        +
Subjt:  E

AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.6e-1128.75Show/hide
Query:  RDHETWTMLFDGAS--NELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKEEWETRDAKLVPYSQS
        R +++ T+ FDGAS  N    G G VL + +  V     +     T+N+AEY A ++GL+ A D   K + VLGDSM V  QV+  W+T   K+    + 
Subjt:  RDHETWTMLFDGAS--NELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKEEWETRDAKLVPYSQS

Query:  LQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAV
         ++                            L  +F+     H++RE N  AD  A  A+
Subjt:  LQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAV

AT3G01410.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.6e-1128.75Show/hide
Query:  RDHETWTMLFDGAS--NELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKEEWETRDAKLVPYSQS
        R +++ T+ FDGAS  N    G G VL + +  V     +     T+N+AEY A ++GL+ A D   K + VLGDSM V  QV+  W+T   K+    + 
Subjt:  RDHETWTMLFDGAS--NELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKEEWETRDAKLVPYSQS

Query:  LQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAV
         ++                            L  +F+     H++RE N  AD  A  A+
Subjt:  LQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAV

AT5G51080.1 RNase H family protein1.6e-0531.37Show/hide
Query:  HETWTMLFDGAS--NELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKEEWETRDAKLVPYSQSLQ
        +ET  + FDGAS  N    G   VL + +G +     +     T+N AEY   I+GL+ A +    K+KV  DS  V  Q+K +W+     L    +  +
Subjt:  HETWTMLFDGAS--NELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKEEWETRDAKLVPYSQSLQ

Query:  QI
        Q+
Subjt:  QI

AT5G51080.2 RNase H family protein1.6e-0531.37Show/hide
Query:  HETWTMLFDGAS--NELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKEEWETRDAKLVPYSQSLQ
        +ET  + FDGAS  N    G   VL + +G +     +     T+N AEY   I+GL+ A +    K+KV  DS  V  Q+K +W+     L    +  +
Subjt:  HETWTMLFDGAS--NELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKEEWETRDAKLVPYSQSLQ

Query:  QI
        Q+
Subjt:  QI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGATTGATTTTCCAGATGAAAACATATTTCTAATTGAAAAGAATGCTAGAGATCATGAGACATGGACTATGCTTTTCGATGGTGCCTCAAATGAGTTGGGACATGG
GATTGGAGTTGTGCTAATTTCTCCAGAAGGAAAGGTTTTTCCCCTAACAGCCAAGTTATGTTTTGAATGCACTCACAATATCGCTGAATATGAAGCTTGCATTATGGGAC
TTCAAGTAGCATGCGATATGAGTATTAAAAAGTTGAAAGTTTTGGGTGACTCGATGTCAGTGATACATCAAGTCAAGGAAGAATGGGAAACAAGAGATGCTAAATTGGTG
CCTTACAGCCAATCACTACAACAAATCTGGCCTTTAATGTCGGGTGGAAAAAATGAAAAATGGGCTTTAATGTCGGTTTTCAAAAAGCGGATTGAATACGTTACAAAATT
GTCTCAAAATTTTGAGAAGATTTCATTTGACCATGTTTCTAGAGAAGATAATCGAATGGCGGATGCATTAGCCACCATGGCAGTGATGTTTGATCTTAATCTTGAATTTG
AACTTCATCCAATCCAAATTACAAAGCGAGATGTGTCAGCATATTGCATGAATGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGATTGATTTTCCAGATGAAAACATATTTCTAATTGAAAAGAATGCTAGAGATCATGAGACATGGACTATGCTTTTCGATGGTGCCTCAAATGAGTTGGGACATGG
GATTGGAGTTGTGCTAATTTCTCCAGAAGGAAAGGTTTTTCCCCTAACAGCCAAGTTATGTTTTGAATGCACTCACAATATCGCTGAATATGAAGCTTGCATTATGGGAC
TTCAAGTAGCATGCGATATGAGTATTAAAAAGTTGAAAGTTTTGGGTGACTCGATGTCAGTGATACATCAAGTCAAGGAAGAATGGGAAACAAGAGATGCTAAATTGGTG
CCTTACAGCCAATCACTACAACAAATCTGGCCTTTAATGTCGGGTGGAAAAAATGAAAAATGGGCTTTAATGTCGGTTTTCAAAAAGCGGATTGAATACGTTACAAAATT
GTCTCAAAATTTTGAGAAGATTTCATTTGACCATGTTTCTAGAGAAGATAATCGAATGGCGGATGCATTAGCCACCATGGCAGTGATGTTTGATCTTAATCTTGAATTTG
AACTTCATCCAATCCAAATTACAAAGCGAGATGTGTCAGCATATTGCATGAATGTTTGA
Protein sequenceShow/hide protein sequence
MRIDFPDENIFLIEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNIAEYEACIMGLQVACDMSIKKLKVLGDSMSVIHQVKEEWETRDAKLV
PYSQSLQQIWPLMSGGKNEKWALMSVFKKRIEYVTKLSQNFEKISFDHVSREDNRMADALATMAVMFDLNLEFELHPIQITKRDVSAYCMNV