CuGenDBv2

Gene ID	Pay0012499
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr01:11572216..11573037
RNA-Seq Expression	Pay0012499
Synteny	Pay0012499
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035949.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.8e-89

77.33

Show/hide

Query:  STGSDEDRSFYKTWERSNKLSLMFMRMTIANNIKSIIKKTEDAKEFMKSVEKCSQSESADKSLAGILMNTLTNIKFDGSRTIHEHILEMTNLIARLKTMG
        S  SD+DRSFYK WERSN+LSLMFMRMT+ANNIKSIIK TEDAKEFMKSVEKCSQSESADKSLAG LM+TLTNIKFDGSRTIHEHILEMTNL ARLKTMG
Subjt:  STGSDEDRSFYKTWERSNKLSLMFMRMTIANNIKSIIKKTEDAKEFMKSVEKCSQSESADKSLAGILMNTLTNIKFDGSRTIHEHILEMTNLIARLKTMG

Query:  IEVNENFSVTFILNFLPSEYGPFHMNYNTLKDKWNAHELQSMLIQEEARLKKPIIHSANLMGHKG---------------------------------DK
        +EVNENF V FILN LPSEYGPFHMNYNTLKDKWN HELQSMLIQEEARLKKPIIHSANLM HKG                                 DK
Subjt:  IEVNENFSVTFILNFLPSEYGPFHMNYNTLKDKWNAHELQSMLIQEEARLKKPIIHSANLMGHKG---------------------------------DK

Query:  CRFCNKPRHYQKDCLKRKAWFKNKG
        CRFCNKP HYQKDCLKRKAWF+NKG
Subjt:  CRFCNKPRHYQKDCLKRKAWFKNKG

KAA0039623.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

7.9e-87

75.56

Show/hide

Query:  STGSDEDRSFYKTWERSNKLSLMFMRMTIANNIKSIIKKTEDAKEFMKSVEKCSQSESADKSLAGILMNTLTNIKFDGSRTIHEHILEMTNLIARLKTMG
        S  SDEDRSFYK WERSN+LSLMFMRMT+ANNIKS IK TEDAKEFMKSVEKCSQSES DKSLA  LM+TLTNIKFDGSRTIHEHILEMTNL ARLKTMG
Subjt:  STGSDEDRSFYKTWERSNKLSLMFMRMTIANNIKSIIKKTEDAKEFMKSVEKCSQSESADKSLAGILMNTLTNIKFDGSRTIHEHILEMTNLIARLKTMG

Query:  IEVNENFSVTFILNFLPSEYGPFHMNYNTLKDKWNAHELQSMLIQEEARLKKPIIHSANLMGHKG---------------------------------DK
        +EVNENF VTFILN LP +YGPFH+NYN LKDKWN HELQSMLIQEEARLKKPIIHSANLMGHKG                                 DK
Subjt:  IEVNENFSVTFILNFLPSEYGPFHMNYNTLKDKWNAHELQSMLIQEEARLKKPIIHSANLMGHKG---------------------------------DK

Query:  CRFCNKPRHYQKDCLKRKAWFKNKG
        CRFCNKP HYQKDCLKRKAWF+NKG
Subjt:  CRFCNKPRHYQKDCLKRKAWFKNKG

KAA0041280.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.2e-89

77.33

Show/hide

Query:  STGSDEDRSFYKTWERSNKLSLMFMRMTIANNIKSIIKKTEDAKEFMKSVEKCSQSESADKSLAGILMNTLTNIKFDGSRTIHEHILEMTNLIARLKTMG
        S  SDEDRSFYK WERSN+LSLMFMRMT+ANNIKS IK TEDAKEFMKSVEKCSQSESADKSLAG LM+TLTNIKFDGSRTIHEHILEMTNL ARLKTMG
Subjt:  STGSDEDRSFYKTWERSNKLSLMFMRMTIANNIKSIIKKTEDAKEFMKSVEKCSQSESADKSLAGILMNTLTNIKFDGSRTIHEHILEMTNLIARLKTMG

Query:  IEVNENFSVTFILNFLPSEYGPFHMNYNTLKDKWNAHELQSMLIQEEARLKKPIIHSANLMGHKG---------------------------------DK
        +EVNENF VTFILN LPS+YGPFHMNYNTLKDKWN HELQSMLIQEEARLKKPIIHSANLMGHKG                                 DK
Subjt:  IEVNENFSVTFILNFLPSEYGPFHMNYNTLKDKWNAHELQSMLIQEEARLKKPIIHSANLMGHKG---------------------------------DK

Query:  CRFCNKPRHYQKDCLKRKAWFKNKG
        C FCNKP HYQKDCLKRKAWF+NKG
Subjt:  CRFCNKPRHYQKDCLKRKAWFKNKG

KAA0046843.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

4.2e-88

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Query:  STGSDEDRSFYKTWERSNKLSLMFMRMTIANNIKSIIKKTEDAKEFMKSVEKCSQSESADKSLAGILMNTLTNIKFDGSRTIHEHILEMTNLIARLKTMG
        S  SDEDRSFYK W+RSN+LSLMFM+MT+ANNIKS IK TEDAKEFMKSVEKCSQSESADKSL G LM+TLTNIKFDGSRTIHEHILE+TNL ARLKTMG
Subjt:  STGSDEDRSFYKTWERSNKLSLMFMRMTIANNIKSIIKKTEDAKEFMKSVEKCSQSESADKSLAGILMNTLTNIKFDGSRTIHEHILEMTNLIARLKTMG

Query:  IEVNENFSVTFILNFLPSEYGPFHMNYNTLKDKWNAHELQSMLIQEEARLKKPIIHSANLMGHKG---------------------------------DK
        +EVNENF VTFILN LPSEYGPFHMNYNTLKDKWN HELQSMLIQEEARLKKPIIHS NLMGHKG                                 DK
Subjt:  IEVNENFSVTFILNFLPSEYGPFHMNYNTLKDKWNAHELQSMLIQEEARLKKPIIHSANLMGHKG---------------------------------DK

Query:  CRFCNKPRHYQKDCLKRKAWFKNKG
        CRFCNKP HYQKDCLKRKAWF+NKG
Subjt:  CRFCNKPRHYQKDCLKRKAWFKNKG

TYK04201.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

6.1e-87

75.89

Show/hide

Query:  STGSDEDRSFYKTWERSNKLSLMFMRMTIANNIKSIIKKTEDAKEFMKSVEKCSQSESADKSLAGILMNTLTNIKFDGSRTIHEHILEMTNLIARLKTMG
        S  SDEDRSFYK WERSN+LSLMF+RMT+ANNIK  IK TEDAKEFMKSV+KC QSESADKSLAG LM+TLTNIKFDGSRTIHEHILEMTNL ARLKTMG
Subjt:  STGSDEDRSFYKTWERSNKLSLMFMRMTIANNIKSIIKKTEDAKEFMKSVEKCSQSESADKSLAGILMNTLTNIKFDGSRTIHEHILEMTNLIARLKTMG

Query:  IEVNENFSVTFILNFLPSEYGPFHMNYNTLKDKWNAHELQSMLIQEEARLKKPIIHSANLMGHKG---------------------------------DK
        +EVNENF VTFILN LPSEYGPFHMNYNTLKDKWN HELQSMLIQEEARLKKPIIHS NLMGHKG                                 DK
Subjt:  IEVNENFSVTFILNFLPSEYGPFHMNYNTLKDKWNAHELQSMLIQEEARLKKPIIHSANLMGHKG---------------------------------DK

Query:  CRFCNKPRHYQKDCLKRKAWFKNK
        CRFCNKP HYQKDCLKRKAWF+NK
Subjt:  CRFCNKPRHYQKDCLKRKAWFKNK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T3G8 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.8e-89

77.33

Show/hide

Query:  STGSDEDRSFYKTWERSNKLSLMFMRMTIANNIKSIIKKTEDAKEFMKSVEKCSQSESADKSLAGILMNTLTNIKFDGSRTIHEHILEMTNLIARLKTMG
        S  SD+DRSFYK WERSN+LSLMFMRMT+ANNIKSIIK TEDAKEFMKSVEKCSQSESADKSLAG LM+TLTNIKFDGSRTIHEHILEMTNL ARLKTMG
Subjt:  STGSDEDRSFYKTWERSNKLSLMFMRMTIANNIKSIIKKTEDAKEFMKSVEKCSQSESADKSLAGILMNTLTNIKFDGSRTIHEHILEMTNLIARLKTMG

Query:  IEVNENFSVTFILNFLPSEYGPFHMNYNTLKDKWNAHELQSMLIQEEARLKKPIIHSANLMGHKG---------------------------------DK
        +EVNENF V FILN LPSEYGPFHMNYNTLKDKWN HELQSMLIQEEARLKKPIIHSANLM HKG                                 DK
Subjt:  IEVNENFSVTFILNFLPSEYGPFHMNYNTLKDKWNAHELQSMLIQEEARLKKPIIHSANLMGHKG---------------------------------DK

Query:  CRFCNKPRHYQKDCLKRKAWFKNKG
        CRFCNKP HYQKDCLKRKAWF+NKG
Subjt:  CRFCNKPRHYQKDCLKRKAWFKNKG

A0A5A7TD98 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.1e-89

77.33

Show/hide

Query:  STGSDEDRSFYKTWERSNKLSLMFMRMTIANNIKSIIKKTEDAKEFMKSVEKCSQSESADKSLAGILMNTLTNIKFDGSRTIHEHILEMTNLIARLKTMG
        S  SDEDRSFYK WERSN+LSLMFMRMT+ANNIKS IK TEDAKEFMKSVEKCSQSESADKSLAG LM+TLTNIKFDGSRTIHEHILEMTNL ARLKTMG
Subjt:  STGSDEDRSFYKTWERSNKLSLMFMRMTIANNIKSIIKKTEDAKEFMKSVEKCSQSESADKSLAGILMNTLTNIKFDGSRTIHEHILEMTNLIARLKTMG

Query:  IEVNENFSVTFILNFLPSEYGPFHMNYNTLKDKWNAHELQSMLIQEEARLKKPIIHSANLMGHKG---------------------------------DK
        +EVNENF VTFILN LPS+YGPFHMNYNTLKDKWN HELQSMLIQEEARLKKPIIHSANLMGHKG                                 DK
Subjt:  IEVNENFSVTFILNFLPSEYGPFHMNYNTLKDKWNAHELQSMLIQEEARLKKPIIHSANLMGHKG---------------------------------DK

Query:  CRFCNKPRHYQKDCLKRKAWFKNKG
        C FCNKP HYQKDCLKRKAWF+NKG
Subjt:  CRFCNKPRHYQKDCLKRKAWFKNKG

A0A5A7TTF5 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.0e-88

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Query:  STGSDEDRSFYKTWERSNKLSLMFMRMTIANNIKSIIKKTEDAKEFMKSVEKCSQSESADKSLAGILMNTLTNIKFDGSRTIHEHILEMTNLIARLKTMG
        S  SDEDRSFYK W+RSN+LSLMFM+MT+ANNIKS IK TEDAKEFMKSVEKCSQSESADKSL G LM+TLTNIKFDGSRTIHEHILE+TNL ARLKTMG
Subjt:  STGSDEDRSFYKTWERSNKLSLMFMRMTIANNIKSIIKKTEDAKEFMKSVEKCSQSESADKSLAGILMNTLTNIKFDGSRTIHEHILEMTNLIARLKTMG

Query:  IEVNENFSVTFILNFLPSEYGPFHMNYNTLKDKWNAHELQSMLIQEEARLKKPIIHSANLMGHKG---------------------------------DK
        +EVNENF VTFILN LPSEYGPFHMNYNTLKDKWN HELQSMLIQEEARLKKPIIHS NLMGHKG                                 DK
Subjt:  IEVNENFSVTFILNFLPSEYGPFHMNYNTLKDKWNAHELQSMLIQEEARLKKPIIHSANLMGHKG---------------------------------DK

Query:  CRFCNKPRHYQKDCLKRKAWFKNKG
        CRFCNKP HYQKDCLKRKAWF+NKG
Subjt:  CRFCNKPRHYQKDCLKRKAWFKNKG

A0A5D3BPH8 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.8e-87

75.56

Show/hide

Query:  STGSDEDRSFYKTWERSNKLSLMFMRMTIANNIKSIIKKTEDAKEFMKSVEKCSQSESADKSLAGILMNTLTNIKFDGSRTIHEHILEMTNLIARLKTMG
        S  SDEDRSFYK WERSN+LSLMFMRMT+ANNIKS IK TEDAKEFMKSVEKCSQSES DKSLA  LM+TLTNIKFDGSRTIHEHILEMTNL ARLKTMG
Subjt:  STGSDEDRSFYKTWERSNKLSLMFMRMTIANNIKSIIKKTEDAKEFMKSVEKCSQSESADKSLAGILMNTLTNIKFDGSRTIHEHILEMTNLIARLKTMG

Query:  IEVNENFSVTFILNFLPSEYGPFHMNYNTLKDKWNAHELQSMLIQEEARLKKPIIHSANLMGHKG---------------------------------DK
        +EVNENF VTFILN LP +YGPFH+NYN LKDKWN HELQSMLIQEEARLKKPIIHSANLMGHKG                                 DK
Subjt:  IEVNENFSVTFILNFLPSEYGPFHMNYNTLKDKWNAHELQSMLIQEEARLKKPIIHSANLMGHKG---------------------------------DK

Query:  CRFCNKPRHYQKDCLKRKAWFKNKG
        CRFCNKP HYQKDCLKRKAWF+NKG
Subjt:  CRFCNKPRHYQKDCLKRKAWFKNKG

A0A5D3BWW5 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.9e-87

75.89

Show/hide

Query:  STGSDEDRSFYKTWERSNKLSLMFMRMTIANNIKSIIKKTEDAKEFMKSVEKCSQSESADKSLAGILMNTLTNIKFDGSRTIHEHILEMTNLIARLKTMG
        S  SDEDRSFYK WERSN+LSLMF+RMT+ANNIK  IK TEDAKEFMKSV+KC QSESADKSLAG LM+TLTNIKFDGSRTIHEHILEMTNL ARLKTMG
Subjt:  STGSDEDRSFYKTWERSNKLSLMFMRMTIANNIKSIIKKTEDAKEFMKSVEKCSQSESADKSLAGILMNTLTNIKFDGSRTIHEHILEMTNLIARLKTMG

Query:  IEVNENFSVTFILNFLPSEYGPFHMNYNTLKDKWNAHELQSMLIQEEARLKKPIIHSANLMGHKG---------------------------------DK
        +EVNENF VTFILN LPSEYGPFHMNYNTLKDKWN HELQSMLIQEEARLKKPIIHS NLMGHKG                                 DK
Subjt:  IEVNENFSVTFILNFLPSEYGPFHMNYNTLKDKWNAHELQSMLIQEEARLKKPIIHSANLMGHKG---------------------------------DK

Query:  CRFCNKPRHYQKDCLKRKAWFKNK
        CRFCNKP HYQKDCLKRKAWF+NK
Subjt:  CRFCNKPRHYQKDCLKRKAWFKNK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGATTTCTACTGGCAGTGATGAGGATAGATCTTTCTATAAAACTTGGGAAAGATCAAATAAATTGAGCTTAATGTTTATGCGAATGACGATAGCAAACAATATTAAGTC
CATAATTAAGAAAACTGAAGATGCTAAGGAATTTATGAAATCTGTGGAAAAATGTTCTCAGTCAGAGTCGGCTGACAAGTCACTTGCTGGAATACTTATGAATACTTTAA
CCAACATCAAGTTTGATGGTTCTCGTACTATACATGAGCATATCCTTGAAATGACGAACTTGATAGCAAGGTTAAAGACCATGGGAATAGAAGTTAATGAGAATTTTTCG
GTAACATTTATCCTTAATTTCTTACCTTCAGAGTATGGTCCATTTCACATGAACTATAACACTCTGAAAGATAAATGGAATGCGCATGAATTACAAAGTATGCTCATTCA
AGAGGAAGCGAGACTTAAGAAACCAATAATTCACTCTGCCAATCTCATGGGTCACAAAGGAGATAAGTGTCGTTTTTGCAACAAACCCAGACACTATCAGAAAGATTGTC
TAAAACGTAAGGCATGGTTCAAGAATAAAGGGATTCCTTACGACCCAAACCACAAACCCAAATGA

mRNA sequence

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Protein sequence

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MISTGSDEDRSFYKTWERSNKLSLMFMRMTIANNIKSIIKKTEDAKEFMKSVEKCSQSESADKSLAGILMNTLTNIKFDGSRTIHEHILEMTNLIARLKTMGIEVNENFS
VTFILNFLPSEYGPFHMNYNTLKDKWNAHELQSMLIQEEARLKKPIIHSANLMGHKGDKCRFCNKPRHYQKDCLKRKAWFKNKGIPYDPNHKPK

Pay0012499 (gene) of Melon (Payzawat) v1 genome