CuGenDBv2

Gene ID	Pay0012568
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr04:21265983..21267341
RNA-Seq Expression	Pay0012568
Synteny	Pay0012568
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR025724 - GAG-pre-integrase domain IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAN66576.1 hypothetical protein VITISV_016964 [Vitis vinifera]

3.7e-107

53.62

Show/hide

Query:  MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY-------------SKKYTTEVADAKKFIVGKFLDYKMVDS
        MLFYLTTL LA+FL ++  IL  GET+KEK   +D WKH+++LC+NY+LNGLDNTLYNVY              KKY TE A  KKFIVGKFLD+KM+DS
Subjt:  MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY-------------SKKYTTEVADAKKFIVGKFLDYKMVDS

Query:  KTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNRG----------------RKIPQSNKKRKF
        KT+ISQVQE+QVILH+IH+E M+ S+ FQVA++IEKLPP WKDFKNYLKHKRKE+ LEEL+VR+ IEE+NR                  + P++NKKRK 
Subjt:  KTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNRG----------------RKIPQSNKKRKF

Query:  SGE-----------FNGKCFNCNKMGHQSKD-----------------C---------------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLH
          +           F GKC+NC K GH+S D                 C               ++LFMGNSS+SK+EG+GKVILKMTSGKELTLN+VLH
Subjt:  SGE-----------FNGKCFNCNKMGHQSKD-----------------C---------------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLH

Query:  VPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEI-----------------------INNNKVSTFAYIVESF-VWHSRLEHVNFNSLRRLINMNLIPK
        VPDI KNLVS SLLSKNGFKLVFVSDKFVL+KNE+                       INNNK+ + AY+++S  +WH RL HVN+++L RLI+++ +PK
Subjt:  VPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEI-----------------------INNNKVSTFAYIVESF-VWHSRLEHVNFNSLRRLINMNLIPK

Query:  FTFDTNHRCEVCVE
        F  D NH+CE CVE
Subjt:  FTFDTNHRCEVCVE

CAN66637.1 hypothetical protein VITISV_011340 [Vitis vinifera]

2.3e-93

46.15

Show/hide

Query:  MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVYS-------------KKYTTEVADAKKFIVGKFLDYKMVDS
        MLFYLTTL LA+FLT+DA  L   E D +   AID WKH+++LC+NY++NGL ++LYNVYS             +KY TE A AKKF+VG+FLDYKMVDS
Subjt:  MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVYS-------------KKYTTEVADAKKFIVGKFLDYKMVDS

Query:  KTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR----------------------GRKIPQS
        KT++SQVQE+QVILH+IHAE M LSE FQVA+IIEKLPP+WKDFKNYLKHKRKE+ +E+L++R+ IEE+NR                        K   +
Subjt:  KTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR----------------------GRKIPQS

Query:  NKKRKFS-----------GEFNGKCFNCNKMGHQSKDC--------------------------------------------------------------
        N K K S            +F GKCFNC K GH+S DC                                                              
Subjt:  NKKRKFS-----------GEFNGKCFNCNKMGHQSKDC--------------------------------------------------------------

Query:  -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEII---------------------
               +++FMGNS+TS+++GQGKVILKMTSGKELTL NVL+VP+IRKNLVS SLL+ +GF+LVF S+K VLSK+ +                      
Subjt:  -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEII---------------------

Query:  NNNKVSTFAYIVESF-VWHSRLEHVNFNSLRRLINMNLIPKFTFDTNHRCEVCVE
        N NK ST  Y++ES  +WH RL HVN+++LRRLIN+N IP F  ++NH+CE CVE
Subjt:  NNNKVSTFAYIVESF-VWHSRLEHVNFNSLRRLINMNLIPKFTFDTNHRCEVCVE

RVW26252.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

1.8e-106

50.22

Show/hide

Query:  MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY-------------SKKYTTEVADAKKFIVGKFLDYKMVDS
        MLFYLTTL LA+FL ++  IL  GET+KEK  A+D WKH ++LC+NY+LNGLDNTLYNVY              KKY TE A  KKFIVGKFLD+KM+DS
Subjt:  MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY-------------SKKYTTEVADAKKFIVGKFLDYKMVDS

Query:  KTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNRG----------------RKIPQSNKKRKF
        KT+ISQVQE+QVILH+IH+E M+LS+ FQVA++IEKLPP WKDFKNYLKHK KE+ LEEL+VR+ IEE+NR                  + P++NKKRK 
Subjt:  KTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNRG----------------RKIPQSNKKRKF

Query:  SGE-----------FNGKCFNCNKMGHQSKDC--------------------------------------------------------------------
          +           F GKC+NC K GH+S DC                                                                    
Subjt:  SGE-----------FNGKCFNCNKMGHQSKDC--------------------------------------------------------------------

Query:  --QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEI-----------------------INNN
          ++LFMGNSS+SKVEG+GKVILKMTSGKELTLN+VLHVPDI KNLVS SLLSKNGFKLVFVSDKFVL+KNE+                       INNN
Subjt:  --QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEI-----------------------INNN

Query:  KVSTFAYIVESF-VWHSRLEHVNFNSLRRLINMNLIPKFTFDTNHRCEVCVE
        K+ + AY++ES  +WH RL HVN+++LRRLI+++ +PKF  DTNH+CE CVE
Subjt:  KVSTFAYIVESF-VWHSRLEHVNFNSLRRLINMNLIPKFTFDTNHRCEVCVE

RVW75537.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

1.0e-93

46.37

Show/hide

Query:  MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVYS-------------KKYTTEVADAKKFIVGKFLDYKMVDS
        MLFYLTTL LA+FLT+DA  L   E D +   AID WKH+++LC+NY++NGL ++LYNVYS             +KY TE A AKKF+VG+FLDYKMVDS
Subjt:  MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVYS-------------KKYTTEVADAKKFIVGKFLDYKMVDS

Query:  KTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR----------------------GRKIPQS
        KT++SQVQE+QVILH+IHAE M LSE FQVA IIEKLPP+WKDFKNYLKHKRKE+ +E+L++R+ IEE+NR                        K   +
Subjt:  KTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR----------------------GRKIPQS

Query:  NKKRKFS-----------GEFNGKCFNCNKMGHQSKDC--------------------------------------------------------------
        N K K S            +F GKCFNC K GH+S DC                                                              
Subjt:  NKKRKFS-----------GEFNGKCFNCNKMGHQSKDC--------------------------------------------------------------

Query:  -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEII---------------------
               +++FMGNS+TS+++GQGKVILKMTSGKELTL NVL+VP+IRKNLVS SLL+ +GF+LVF S+KFVLSK+ +                      
Subjt:  -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEII---------------------

Query:  NNNKVSTFAYIVESF-VWHSRLEHVNFNSLRRLINMNLIPKFTFDTNHRCEVCVE
        N NK ST  Y++ES  +WH RL HVN+++LRRLIN+N IP F  ++NH+CE CVE
Subjt:  NNNKVSTFAYIVESF-VWHSRLEHVNFNSLRRLINMNLIPKFTFDTNHRCEVCVE

RVX20631.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

2.1e-94

46.37

Show/hide

Query:  MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVYS-------------KKYTTEVADAKKFIVGKFLDYKMVDS
        MLFYLTTL LA+FLT+DAL L   E D +   AID WKH+++LC+NY++NGL ++LYNVYS             +KY TE A AKKF+VG+FLDYKMVDS
Subjt:  MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVYS-------------KKYTTEVADAKKFIVGKFLDYKMVDS

Query:  KTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR----------------------GRKIPQS
        KT++SQVQE+QVILH+IHAE M LSE FQVA+IIEKLPP+WKDFKNYLKHKRKE+ +E+L++R+ IEE+NR                        K   +
Subjt:  KTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR----------------------GRKIPQS

Query:  NKKRKFS-----------GEFNGKCFNCNKMGHQSKDC--------------------------------------------------------------
        N K K S            +F GKCFNC K GH+S DC                                                              
Subjt:  NKKRKFS-----------GEFNGKCFNCNKMGHQSKDC--------------------------------------------------------------

Query:  -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEII---------------------
               +++FMGNS+TS+++GQGKVILKMTSGKELTL NVL+VP+I KNLVS SLL+ +GF+LVF S+KFVLSK+ +                      
Subjt:  -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEII---------------------

Query:  NNNKVSTFAYIVESF-VWHSRLEHVNFNSLRRLINMNLIPKFTFDTNHRCEVCVE
        N NK ST  Y++ES  +WH RL HVN+++LRRLIN+N IP F  ++NH+CE CVE
Subjt:  NNNKVSTFAYIVESF-VWHSRLEHVNFNSLRRLINMNLIPKFTFDTNHRCEVCVE

TrEMBL top hits

e value

%identity

Alignment

A0A438CSS8 Retrovirus-related Pol polyprotein from transposon TNT 1-94

8.9e-107

50.22

Show/hide

Query:  MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY-------------SKKYTTEVADAKKFIVGKFLDYKMVDS
        MLFYLTTL LA+FL ++  IL  GET+KEK  A+D WKH ++LC+NY+LNGLDNTLYNVY              KKY TE A  KKFIVGKFLD+KM+DS
Subjt:  MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY-------------SKKYTTEVADAKKFIVGKFLDYKMVDS

Query:  KTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNRG----------------RKIPQSNKKRKF
        KT+ISQVQE+QVILH+IH+E M+LS+ FQVA++IEKLPP WKDFKNYLKHK KE+ LEEL+VR+ IEE+NR                  + P++NKKRK 
Subjt:  KTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNRG----------------RKIPQSNKKRKF

Query:  SGE-----------FNGKCFNCNKMGHQSKDC--------------------------------------------------------------------
          +           F GKC+NC K GH+S DC                                                                    
Subjt:  SGE-----------FNGKCFNCNKMGHQSKDC--------------------------------------------------------------------

Query:  --QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEI-----------------------INNN
          ++LFMGNSS+SKVEG+GKVILKMTSGKELTLN+VLHVPDI KNLVS SLLSKNGFKLVFVSDKFVL+KNE+                       INNN
Subjt:  --QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEI-----------------------INNN

Query:  KVSTFAYIVESF-VWHSRLEHVNFNSLRRLINMNLIPKFTFDTNHRCEVCVE
        K+ + AY++ES  +WH RL HVN+++LRRLI+++ +PKF  DTNH+CE CVE
Subjt:  KVSTFAYIVESF-VWHSRLEHVNFNSLRRLINMNLIPKFTFDTNHRCEVCVE

A0A438GTK9 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.0e-94

46.37

Show/hide

Query:  MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVYS-------------KKYTTEVADAKKFIVGKFLDYKMVDS
        MLFYLTTL LA+FLT+DA  L   E D +   AID WKH+++LC+NY++NGL ++LYNVYS             +KY TE A AKKF+VG+FLDYKMVDS
Subjt:  MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVYS-------------KKYTTEVADAKKFIVGKFLDYKMVDS

Query:  KTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR----------------------GRKIPQS
        KT++SQVQE+QVILH+IHAE M LSE FQVA IIEKLPP+WKDFKNYLKHKRKE+ +E+L++R+ IEE+NR                        K   +
Subjt:  KTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR----------------------GRKIPQS

Query:  NKKRKFS-----------GEFNGKCFNCNKMGHQSKDC--------------------------------------------------------------
        N K K S            +F GKCFNC K GH+S DC                                                              
Subjt:  NKKRKFS-----------GEFNGKCFNCNKMGHQSKDC--------------------------------------------------------------

Query:  -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEII---------------------
               +++FMGNS+TS+++GQGKVILKMTSGKELTL NVL+VP+IRKNLVS SLL+ +GF+LVF S+KFVLSK+ +                      
Subjt:  -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEII---------------------

Query:  NNNKVSTFAYIVESF-VWHSRLEHVNFNSLRRLINMNLIPKFTFDTNHRCEVCVE
        N NK ST  Y++ES  +WH RL HVN+++LRRLIN+N IP F  ++NH+CE CVE
Subjt:  NNNKVSTFAYIVESF-VWHSRLEHVNFNSLRRLINMNLIPKFTFDTNHRCEVCVE

A0A438KHE8 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.0e-94

46.37

Show/hide

Query:  MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVYS-------------KKYTTEVADAKKFIVGKFLDYKMVDS
        MLFYLTTL LA+FLT+DAL L   E D +   AID WKH+++LC+NY++NGL ++LYNVYS             +KY TE A AKKF+VG+FLDYKMVDS
Subjt:  MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVYS-------------KKYTTEVADAKKFIVGKFLDYKMVDS

Query:  KTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR----------------------GRKIPQS
        KT++SQVQE+QVILH+IHAE M LSE FQVA+IIEKLPP+WKDFKNYLKHKRKE+ +E+L++R+ IEE+NR                        K   +
Subjt:  KTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR----------------------GRKIPQS

Query:  NKKRKFS-----------GEFNGKCFNCNKMGHQSKDC--------------------------------------------------------------
        N K K S            +F GKCFNC K GH+S DC                                                              
Subjt:  NKKRKFS-----------GEFNGKCFNCNKMGHQSKDC--------------------------------------------------------------

Query:  -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEII---------------------
               +++FMGNS+TS+++GQGKVILKMTSGKELTL NVL+VP+I KNLVS SLL+ +GF+LVF S+KFVLSK+ +                      
Subjt:  -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEII---------------------

Query:  NNNKVSTFAYIVESF-VWHSRLEHVNFNSLRRLINMNLIPKFTFDTNHRCEVCVE
        N NK ST  Y++ES  +WH RL HVN+++LRRLIN+N IP F  ++NH+CE CVE
Subjt:  NNNKVSTFAYIVESF-VWHSRLEHVNFNSLRRLINMNLIPKFTFDTNHRCEVCVE

A5AEN5 Uncharacterized protein

1.1e-93

46.15

Show/hide

Query:  MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVYS-------------KKYTTEVADAKKFIVGKFLDYKMVDS
        MLFYLTTL LA+FLT+DA  L   E D +   AID WKH+++LC+NY++NGL ++LYNVYS             +KY TE A AKKF+VG+FLDYKMVDS
Subjt:  MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVYS-------------KKYTTEVADAKKFIVGKFLDYKMVDS

Query:  KTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR----------------------GRKIPQS
        KT++SQVQE+QVILH+IHAE M LSE FQVA+IIEKLPP+WKDFKNYLKHKRKE+ +E+L++R+ IEE+NR                        K   +
Subjt:  KTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNR----------------------GRKIPQS

Query:  NKKRKFS-----------GEFNGKCFNCNKMGHQSKDC--------------------------------------------------------------
        N K K S            +F GKCFNC K GH+S DC                                                              
Subjt:  NKKRKFS-----------GEFNGKCFNCNKMGHQSKDC--------------------------------------------------------------

Query:  -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEII---------------------
               +++FMGNS+TS+++GQGKVILKMTSGKELTL NVL+VP+IRKNLVS SLL+ +GF+LVF S+K VLSK+ +                      
Subjt:  -------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEII---------------------

Query:  NNNKVSTFAYIVESF-VWHSRLEHVNFNSLRRLINMNLIPKFTFDTNHRCEVCVE
        N NK ST  Y++ES  +WH RL HVN+++LRRLIN+N IP F  ++NH+CE CVE
Subjt:  NNNKVSTFAYIVESF-VWHSRLEHVNFNSLRRLINMNLIPKFTFDTNHRCEVCVE

A5CBN2 Uncharacterized protein

1.8e-107

53.62

Show/hide

Query:  MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY-------------SKKYTTEVADAKKFIVGKFLDYKMVDS
        MLFYLTTL LA+FL ++  IL  GET+KEK   +D WKH+++LC+NY+LNGLDNTLYNVY              KKY TE A  KKFIVGKFLD+KM+DS
Subjt:  MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVY-------------SKKYTTEVADAKKFIVGKFLDYKMVDS

Query:  KTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNRG----------------RKIPQSNKKRKF
        KT+ISQVQE+QVILH+IH+E M+ S+ FQVA++IEKLPP WKDFKNYLKHKRKE+ LEEL+VR+ IEE+NR                  + P++NKKRK 
Subjt:  KTIISQVQEIQVILHDIHAENMTLSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNRG----------------RKIPQSNKKRKF

Query:  SGE-----------FNGKCFNCNKMGHQSKD-----------------C---------------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLH
          +           F GKC+NC K GH+S D                 C               ++LFMGNSS+SK+EG+GKVILKMTSGKELTLN+VLH
Subjt:  SGE-----------FNGKCFNCNKMGHQSKD-----------------C---------------QQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLH

Query:  VPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEI-----------------------INNNKVSTFAYIVESF-VWHSRLEHVNFNSLRRLINMNLIPK
        VPDI KNLVS SLLSKNGFKLVFVSDKFVL+KNE+                       INNNK+ + AY+++S  +WH RL HVN+++L RLI+++ +PK
Subjt:  VPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEI-----------------------INNNKVSTFAYIVESF-VWHSRLEHVNFNSLRRLINMNLIPK

Query:  FTFDTNHRCEVCVE
        F  D NH+CE CVE
Subjt:  FTFDTNHRCEVCVE

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.8e-09

30.43

Show/hide

Query:  MGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEIINNNKVS------TFAYI-----------VESF
        MGN+S SK+ G G + +K   G  L L +V HVPD+R NL+S   L ++G++  F + K+ L+K  ++    V+      T A I           +   
Subjt:  MGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEIINNNKVS------TFAYI-----------VESF

Query:  VWHSRLEHVNFNSLRRLINMNLIPKFTFDTNHRCEVCV
        +WH R+ H++   L+ L   +LI      T   C+ C+
Subjt:  VWHSRLEHVNFNSLRRLINMNLIPKFTFDTNHRCEVCV

Arabidopsis top hits

e value

%identity

Alignment

AT4G00980.1 zinc knuckle (CCHC-type) family protein

3.7e-12

25.32

Show/hide

Query:  WKHAEYLCKNYILNGLDNTLYNVYSKK--------------YTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAENMTLSEFFQVASIIE
        W   +YLC  +++N L + LY  YS+K              Y  + + +K+  V K+++++MV+ + I+ QVQ    I   I +  M L E F V++II 
Subjt:  WKHAEYLCKNYILNGLDNTLYNVYSKK--------------YTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAENMTLSEFFQVASIIE

Query:  KLPPSWKDFKNYLKHKR--------KEIKLEELVVRIGIE--------ENNRGRKIPQSNKKRKFSGEFNGK-------------CFNCNKMGHQSKDCQ
        K PPSW+ F   L  +         + +K EE ++R G +         +++  + P      + S     K             C NC + GH +K C 
Subjt:  KLPPSWKDFKNYLKHKR--------KEIKLEELVVRIGIE--------ENNRGRKIPQSNKKRKFSGEFNGK-------------CFNCNKMGHQSKDCQ

Query:  QLFMGNSSTSKVEGQ-----GKVILKMTSGKELTLNN
            G+ S  +  G+       V   + S  + T NN
Subjt:  QLFMGNSSTSKVEGQ-----GKVILKMTSGKELTLNN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTGTTCTATCTCACCACTCTAAAGTTGGCAAAGTTTCTCACAAAGGATGCTCTCATTTTACATGCGGGAGAAACTGACAAAGAAAAGCAACTTGCAATTGATGTATG
GAAACATGCAGAATATCTTTGCAAGAATTACATTCTGAATGGATTGGACAACACACTCTACAATGTGTATAGTAAGAAGTACACAACTGAAGTTGCTGATGCAAAGAAAT
TTATCGTTGGAAAATTTCTAGATTACAAAATGGTGGACTCCAAAACTATAATTAGTCAGGTTCAGGAAATCCAGGTAATCTTACATGATATACATGCTGAGAATATGACT
TTGAGTGAGTTTTTTCAGGTAGCATCAATAATTGAAAAATTACCACCCTCATGGAAGGACTTTAAAAATTATCTCAAGCATAAACGCAAAGAGATAAAGCTTGAGGAACT
TGTAGTTCGAATTGGGATCGAAGAGAATAATAGAGGCAGAAAAATACCACAAAGTAACAAGAAAAGGAAATTTTCTGGTGAATTCAATGGCAAGTGCTTCAACTGCAACA
AAATGGGACATCAATCTAAGGATTGTCAGCAATTATTCATGGGTAATTCCTCTACGTCAAAGGTCGAGGGACAAGGAAAAGTAATTCTTAAGATGACTTCTGGGAAGGAA
CTCACTCTCAACAATGTGCTTCATGTTCCTGACATTCGCAAGAACTTAGTTTCTAGTTCATTACTTAGTAAGAATGGCTTTAAGTTGGTCTTTGTATCTGATAAATTTGT
ACTTTCCAAGAATGAGATTATTAATAATAATAAAGTATCTACTTTTGCTTATATTGTTGAGTCATTTGTTTGGCATAGTAGACTAGAACATGTCAACTTCAATTCTTTGC
GTAGGCTGATTAATATGAACTTGATTCCAAAATTCACTTTTGATACAAATCATAGATGTGAAGTATGTGTGGAATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MLFYLTTLKLAKFLTKDALILHAGETDKEKQLAIDVWKHAEYLCKNYILNGLDNTLYNVYSKKYTTEVADAKKFIVGKFLDYKMVDSKTIISQVQEIQVILHDIHAENMT
LSEFFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRIGIEENNRGRKIPQSNKKRKFSGEFNGKCFNCNKMGHQSKDCQQLFMGNSSTSKVEGQGKVILKMTSGKE
LTLNNVLHVPDIRKNLVSSSLLSKNGFKLVFVSDKFVLSKNEIINNNKVSTFAYIVESFVWHSRLEHVNFNSLRRLINMNLIPKFTFDTNHRCEVCVE

Pay0012568 (gene) of Melon (Payzawat) v1 genome