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Pay0012604 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0012604
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRibonuclease H
Genome locationchr04:24288147..24288661
RNA-Seq ExpressionPay0012604
SyntenyPay0012604
Gene Ontology termsGO:0071897 - DNA biosynthetic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0034061 - DNA polymerase activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036943.1 uncharacterized protein E6C27_scaffold86G00190 [Cucumis melo var. makuwa]8.2e-4566.45Show/hide
Query:  MGLQVACDMSIKKLKVLGDSI-------------DAKLMPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMLNLNLELELHPIQITKRD-----
        MGLQVACDMSIKKLKVLGDS+             DAKL+PYSQYVTKLSQ FEKISFDHVPREDNRMADALATLAVM +LNLE ELHPIQITKRD     
Subjt:  MGLQVACDMSIKKLKVLGDSI-------------DAKLMPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMLNLNLELELHPIQITKRD-----

Query:  --------PWYFDIKQYIKCKEYPYEASKNDKCTFFIKETTIWCSFGVLMRRKQN
                PWYFDIKQYIKC+EYPYEAS+NDK T        + S  VL +R  +
Subjt:  --------PWYFDIKQYIKCKEYPYEASKNDKCTFFIKETTIWCSFGVLMRRKQN

KAA0037621.1 uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]1.1e-4466.45Show/hide
Query:  MGLQVACDMSIKKLKVLGDSI-------------DAKLMPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMLNLNLELELHPIQITKRD-----
        MGLQVACDMSIKKLKVLGDS+              AKL+PYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVM +LNLE ELHPIQITKRD     
Subjt:  MGLQVACDMSIKKLKVLGDSI-------------DAKLMPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMLNLNLELELHPIQITKRD-----

Query:  --------PWYFDIKQYIKCKEYPYEASKNDKCTFFIKETTIWCSFGVLMRRKQN
                PWYFDIKQYIKC+EYPYEAS+NDK T        + S  VL +R  +
Subjt:  --------PWYFDIKQYIKCKEYPYEASKNDKCTFFIKETTIWCSFGVLMRRKQN

KAA0038144.1 protein NYNRIN-like [Cucumis melo var. makuwa]1.1e-4466.45Show/hide
Query:  MGLQVACDMSIKKLKVLGDSI-------------DAKLMPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMLNLNLELELHPIQITKRD-----
        MGLQVACDMSIKKLKVLGDS+             DAKL PYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVM +LNLE ELHPIQITK+D     
Subjt:  MGLQVACDMSIKKLKVLGDSI-------------DAKLMPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMLNLNLELELHPIQITKRD-----

Query:  --------PWYFDIKQYIKCKEYPYEASKNDKCTFFIKETTIWCSFGVLMRRKQN
                PWYFDIKQYIKC+EYPYEAS+NDK T        + S  VL +R  +
Subjt:  --------PWYFDIKQYIKCKEYPYEASKNDKCTFFIKETTIWCSFGVLMRRKQN

TYK24459.1 uncharacterized protein E5676_scaffold717G00160 [Cucumis melo var. makuwa]6.3e-4566.45Show/hide
Query:  MGLQVACDMSIKKLKVLGDSI-------------DAKLMPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMLNLNLELELHPIQITKRD-----
        MGLQVACDMSIKKLKVLGDS+             DAKL+PYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVM +LNLE ELHPIQITKRD     
Subjt:  MGLQVACDMSIKKLKVLGDSI-------------DAKLMPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMLNLNLELELHPIQITKRD-----

Query:  --------PWYFDIKQYIKCKEYPYEASKNDKCTFFIKETTIWCSFGVLMRRKQN
                PWYFDIKQYIKC+EYPYEAS+NDK          + S  VL +R  +
Subjt:  --------PWYFDIKQYIKCKEYPYEASKNDKCTFFIKETTIWCSFGVLMRRKQN

XP_016901285.1 PREDICTED: uncharacterized protein LOC107991219 [Cucumis melo]8.2e-5368.24Show/hide
Query:  MGLQVACDMSIKKLKVLGDSI-------------DAKLMPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMLNLNLELELHPIQITKRD-----
        MGLQVACDM IKKLKVLGDS+             DAKL+PYSQYVTKLSQNFEKISFDHVPREDNR+ADALATLA+M +LNLE ELHPIQITKRD     
Subjt:  MGLQVACDMSIKKLKVLGDSI-------------DAKLMPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMLNLNLELELHPIQITKRD-----

Query:  --------PWYFDIKQYIKCKEYPYEASKNDKCT-------FFI------KETTIWCSFGVLMRRKQNKL
                PWYFDIKQYIKC+EYPYE  +NDKCT       FF+      K+TTIWCSF VLMRRKQNKL
Subjt:  --------PWYFDIKQYIKCKEYPYEASKNDKCT-------FFI------KETTIWCSFGVLMRRKQNKL

TrEMBL top hitse value%identityAlignment
A0A1S4DZX1 uncharacterized protein LOC1079912194.0e-5368.24Show/hide
Query:  MGLQVACDMSIKKLKVLGDSI-------------DAKLMPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMLNLNLELELHPIQITKRD-----
        MGLQVACDM IKKLKVLGDS+             DAKL+PYSQYVTKLSQNFEKISFDHVPREDNR+ADALATLA+M +LNLE ELHPIQITKRD     
Subjt:  MGLQVACDMSIKKLKVLGDSI-------------DAKLMPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMLNLNLELELHPIQITKRD-----

Query:  --------PWYFDIKQYIKCKEYPYEASKNDKCT-------FFI------KETTIWCSFGVLMRRKQNKL
                PWYFDIKQYIKC+EYPYE  +NDKCT       FF+      K+TTIWCSF VLMRRKQNKL
Subjt:  --------PWYFDIKQYIKCKEYPYEASKNDKCT-------FFI------KETTIWCSFGVLMRRKQNKL

A0A5A7T1X2 Ribonuclease H4.0e-4566.45Show/hide
Query:  MGLQVACDMSIKKLKVLGDSI-------------DAKLMPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMLNLNLELELHPIQITKRD-----
        MGLQVACDMSIKKLKVLGDS+             DAKL+PYSQYVTKLSQ FEKISFDHVPREDNRMADALATLAVM +LNLE ELHPIQITKRD     
Subjt:  MGLQVACDMSIKKLKVLGDSI-------------DAKLMPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMLNLNLELELHPIQITKRD-----

Query:  --------PWYFDIKQYIKCKEYPYEASKNDKCTFFIKETTIWCSFGVLMRRKQN
                PWYFDIKQYIKC+EYPYEAS+NDK T        + S  VL +R  +
Subjt:  --------PWYFDIKQYIKCKEYPYEASKNDKCTFFIKETTIWCSFGVLMRRKQN

A0A5A7T3U9 Protein NYNRIN-like5.2e-4566.45Show/hide
Query:  MGLQVACDMSIKKLKVLGDSI-------------DAKLMPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMLNLNLELELHPIQITKRD-----
        MGLQVACDMSIKKLKVLGDS+             DAKL PYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVM +LNLE ELHPIQITK+D     
Subjt:  MGLQVACDMSIKKLKVLGDSI-------------DAKLMPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMLNLNLELELHPIQITKRD-----

Query:  --------PWYFDIKQYIKCKEYPYEASKNDKCTFFIKETTIWCSFGVLMRRKQN
                PWYFDIKQYIKC+EYPYEAS+NDK T        + S  VL +R  +
Subjt:  --------PWYFDIKQYIKCKEYPYEASKNDKCTFFIKETTIWCSFGVLMRRKQN

A0A5A7T7R4 Ribonuclease H5.2e-4566.45Show/hide
Query:  MGLQVACDMSIKKLKVLGDSI-------------DAKLMPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMLNLNLELELHPIQITKRD-----
        MGLQVACDMSIKKLKVLGDS+              AKL+PYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVM +LNLE ELHPIQITKRD     
Subjt:  MGLQVACDMSIKKLKVLGDSI-------------DAKLMPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMLNLNLELELHPIQITKRD-----

Query:  --------PWYFDIKQYIKCKEYPYEASKNDKCTFFIKETTIWCSFGVLMRRKQN
                PWYFDIKQYIKC+EYPYEAS+NDK T        + S  VL +R  +
Subjt:  --------PWYFDIKQYIKCKEYPYEASKNDKCTFFIKETTIWCSFGVLMRRKQN

A0A5D3DMD2 Ribonuclease H3.0e-4566.45Show/hide
Query:  MGLQVACDMSIKKLKVLGDSI-------------DAKLMPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMLNLNLELELHPIQITKRD-----
        MGLQVACDMSIKKLKVLGDS+             DAKL+PYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVM +LNLE ELHPIQITKRD     
Subjt:  MGLQVACDMSIKKLKVLGDSI-------------DAKLMPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMLNLNLELELHPIQITKRD-----

Query:  --------PWYFDIKQYIKCKEYPYEASKNDKCTFFIKETTIWCSFGVLMRRKQN
                PWYFDIKQYIKC+EYPYEAS+NDK          + S  VL +R  +
Subjt:  --------PWYFDIKQYIKCKEYPYEASKNDKCTFFIKETTIWCSFGVLMRRKQN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACTTCAAGTAGCATGCGATATGAGTATTAAAAAGTTGAAAGTTTTGGGTGACTCGATAGATGCTAAATTGATGCCTTACAGCCAATACGTTACAAAATTG
TCTCAAAATTTTGAGAAGATTTCATTTGACCATGTTCCTAGGGAAGACAATCGAATGGCGGATGCCTTAGCCACCCTGGCAGTGATGCTTAATCTTAATCTTGAA
CTTGAACTTCATCCAATCCAAATTACAAAGCGAGATCCATGGTATTTTGACATTAAGCAATACATAAAGTGTAAAGAATATCCATATGAAGCTTCAAAGAATGAC
AAATGCACATTCTTTATAAAAGAAACCACGATATGGTGCTCCTTCGGTGTGTTAATGAGGAGGAAGCAAAACAAATTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGACTTCAAGTAGCATGCGATATGAGTATTAAAAAGTTGAAAGTTTTGGGTGACTCGATAGATGCTAAATTGATGCCTTACAGCCAATACGTTACAAAATTG
TCTCAAAATTTTGAGAAGATTTCATTTGACCATGTTCCTAGGGAAGACAATCGAATGGCGGATGCCTTAGCCACCCTGGCAGTGATGCTTAATCTTAATCTTGAA
CTTGAACTTCATCCAATCCAAATTACAAAGCGAGATCCATGGTATTTTGACATTAAGCAATACATAAAGTGTAAAGAATATCCATATGAAGCTTCAAAGAATGAC
AAATGCACATTCTTTATAAAAGAAACCACGATATGGTGCTCCTTCGGTGTGTTAATGAGGAGGAAGCAAAACAAATTATGA
Protein sequenceShow/hide protein sequence
MGLQVACDMSIKKLKVLGDSIDAKLMPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMLNLNLELELHPIQITKRDPWYFDIKQYIKCKEYPYEASKND
KCTFFIKETTIWCSFGVLMRRKQNKL