; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Pay0012611 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0012611
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Descriptionmediator of RNA polymerase II transcription subunit 22b-like
Genome locationchr12:17436816..17443365
RNA-Seq ExpressionPay0012611
SyntenyPay0012611
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016592 - mediator complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR009332 - Mediator of RNA polymerase II transcription subunit 22


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029838.1 Mediator of RNA polymerase II transcription subunit 22b [Cucurbita argyrosperma subsp. argyrosperma]7.9e-6894.67Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
        VEQRIVEFNQQA+QTDR+LS+IGEEAA  LKELESHYYSSTQRT QN+LT
Subjt:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT

XP_004145443.1 mediator of RNA polymerase II transcription subunit 22b [Cucumis sativus]5.9e-7199.33Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
        VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQN+LT
Subjt:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT

XP_008459037.1 PREDICTED: mediator of RNA polymerase II transcription subunit 22a-like isoform X1 [Cucumis melo]4.5e-7199.33Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
        VEQRIVEFNQQAQQT+RLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
Subjt:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT

XP_008459039.1 PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like isoform X2 [Cucumis melo]4.5e-7199.33Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
        VEQRIVEFNQQAQQT+RLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
Subjt:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT

XP_038891249.1 mediator of RNA polymerase II transcription subunit 22b-like [Benincasa hispida]7.2e-6997.33Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGG GPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
        VEQRIVEFNQQAQQTDRLLS IGEEAAA+LKELESHYYSSTQRT QNNLT
Subjt:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT

TrEMBL top hitse value%identityAlignment
A0A0A0M174 Uncharacterized protein2.8e-7199.33Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
        VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQN+LT
Subjt:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT

A0A1S3C993 mediator of RNA polymerase II transcription subunit 22b-like isoform X22.2e-7199.33Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
        VEQRIVEFNQQAQQT+RLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
Subjt:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT

A0A1S3CAG5 mediator of RNA polymerase II transcription subunit 22a-like isoform X12.2e-7199.33Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
        VEQRIVEFNQQAQQT+RLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
Subjt:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT

A0A5A7TMC4 Mediator of RNA polymerase II transcription subunit 22a-like isoform X12.2e-7199.33Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
        VEQRIVEFNQQAQQT+RLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
Subjt:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT

A0A6J1EN95 mediator of RNA polymerase II transcription subunit 22b-like8.5e-6894Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT
        VEQRIVEFNQQA+QTDR++S+IGEEAA  LKELESHYYSSTQRT QN LT
Subjt:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT

SwissProt top hitse value%identityAlignment
A0JPN6 Mediator of RNA polymerase II transcription subunit 221.1e-1434.72Show/hide
Query:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR
        A   A  Q ++ LLQ    R++ DI +I+DNFT ++  +++ D        +  Q+++ M +RAA +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR
Subjt:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR

Query:  IVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNN
          +     ++ DR L  + +E + +L ELE  YYSS+    + N
Subjt:  IVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNN

Q54XB0 Putative mediator of RNA polymerase II transcription subunit 228.1e-1530.07Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MN G G  + P         + Q+   +++++ I  +++N+ +++ +S+VND P++N+ E + ME R + M+ A + LLK++ ELKQ  I + F+++ + 
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQR
        V  + + F+++ ++T++ +  I EE + +LKELE  YY+S+ +
Subjt:  VEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQR

Q62276 Mediator of RNA polymerase II transcription subunit 221.1e-1434.72Show/hide
Query:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR
        A   A  Q ++ LLQ    R++ DI +I+DNFT ++  +++ D        +  Q+++ M +RAA +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR
Subjt:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR

Query:  IVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNN
          +     ++ DR L  + +E + +L ELE  YYSS+    + N
Subjt:  IVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNN

Q8LCH5 Mediator of RNA polymerase II transcription subunit 22b4.2e-5681.43Show/hide
Query:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
        G GGG+GPTAAAAAAA QKQK LLQRVETDI ++VDNFT +VNVSRV+DPPV+NSQE++MMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
Subjt:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ

Query:  RIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQR
        RI EF+Q+A++T+RLL+RI ++A+ANLKELESHYYSS QR
Subjt:  RIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQR

Q9SA42 Mediator of RNA polymerase II transcription subunit 22a2.3e-5476.03Show/hide
Query:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLN
        MNK  G GGG+GPTAAAAAAA QKQK LLQRV+TDI ++VDNF  +VNV+RV+DPP++NSQE++MMEMRA+R+VQAADSLLKLVSELKQTAIFSGFASLN
Subjt:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLN

Query:  DHVEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRT
        DHVEQRI EF+Q+A++T+RLL+RI ++A+A+LKELESHYYSS QR+
Subjt:  DHVEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRT

Arabidopsis top hitse value%identityAlignment
AT1G07950.1 Surfeit locus protein 5 subunit 22 of Mediator complex3.0e-5781.43Show/hide
Query:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
        G GGG+GPTAAAAAAA QKQK LLQRVETDI ++VDNFT +VNVSRV+DPPV+NSQE++MMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
Subjt:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ

Query:  RIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQR
        RI EF+Q+A++T+RLL+RI ++A+ANLKELESHYYSS QR
Subjt:  RIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQR

AT1G16430.1 Surfeit locus protein 5 subunit 22 of Mediator complex1.6e-5576.03Show/hide
Query:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLN
        MNK  G GGG+GPTAAAAAAA QKQK LLQRV+TDI ++VDNF  +VNV+RV+DPP++NSQE++MMEMRA+R+VQAADSLLKLVSELKQTAIFSGFASLN
Subjt:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLN

Query:  DHVEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRT
        DHVEQRI EF+Q+A++T+RLL+RI ++A+A+LKELESHYYSS QR+
Subjt:  DHVEQRIVEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAAGGCATTGGTGGTGGAACTGGTCCCACTGCAGCGGCTGCGGCGGCGGCAGCTCAGAAGCAGAAACTGCTTCTCCAGAGAGTGGAAACTGATATAGCC
AATATTGTTGACAACTTCACCCACCTTGTCAACGTCTCTAGAGTGAACGATCCACCAGTTAGAAATTCACAGGAATCTTTTATGATGGAAATGCGCGCCGCCAGA
ATGGTTCAGGCAGCTGATTCTTTGCTGAAGTTGGTTTCAGAACTTAAGCAAACAGCCATCTTTTCTGGATTTGCTTCACTAAACGATCATGTGGAGCAAAGAATA
GTGGAATTCAATCAGCAGGCACAGCAAACCGATCGTCTTTTATCTAGAATTGGTGAAGAAGCTGCTGCCAATTTGAAGGAGCTTGAATCTCATTATTATTCTTCA
ACACAGAGGACTGATCAGAACAACCTAACGTGA
mRNA sequenceShow/hide mRNA sequence
AATTATCAATATTGTTTTTACAAACCTTCTTCGTTGCACATTCTGCACGCCGCTCGTTCTCCCTCATCTCCCATCCGCCTCGAACCTCACTCGCCGGCGTCTCTC
CCGTCCCCTTCGTCACACCTTGTTCTGCAGAGCGGCTCATTCTCCCCCATCTCCCATCCGCGTCGAACAACCAAGCCGGCGTCTCCCTCCCTCGCCACTTGGTTG
CCATTTTCGGTAGCTGATTCAATTCCCATTTCTATCTCTATTATTATGAACAAAGGCATTGGTGGTGGAACTGGTCCCACTGCAGCGGCTGCGGCGGCGGCAGCT
CAGAAGCAGAAACTGCTTCTCCAGAGAGTGGAAACTGATATAGCCAATATTGTTGACAACTTCACCCACCTTGTCAACGTCTCTAGAGTGAACGATCCACCAGTT
AGAAATTCACAGGAATCTTTTATGATGGAAATGCGCGCCGCCAGAATGGTTCAGGCAGCTGATTCTTTGCTGAAGTTGGTTTCAGAACTTAAGCAAACAGCCATC
TTTTCTGGATTTGCTTCACTAAACGATCATGTGGAGCAAAGAATAGTGGAATTCAATCAGCAGGCACAGCAAACCGATCGTCTTTTATCTAGAATTGGTGAAGAA
GCTGCTGCCAATTTGAAGGAGCTTGAATCTCATTATTATTCTTCAACACAGAGGACTGATCAGAACAACCTAACGTGATTAAGTAAAGTGGAAAGTGGTAAATTA
AGTAAATTAATGATGTGATACGGCTGGCTTCTAAACTCAGTTGCTTGCTAACATGGACAATGAAATGTAATTGAACACTTCTAATTTATGTTTCTGGCGATTTTC
TTTTGCTTTTTATTATTATGCCAAGCTATATGTGTCGGAACTAACAGAAGATCATTATTCATCTTATTCATCTTCCATCGAAAGTGATAAGTTGGATATTAACTT
CTTTCCGTTATTTGATTTTGACATGGTTTTCTCATTTAACTTGGCTTGGCTTATTCATGTTGTGGGTTTACTCGATCTTGATTAACTATTTGGTTTATCTTTTCG
GGTAAAAAAAAG
Protein sequenceShow/hide protein sequence
MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRI
VEFNQQAQQTDRLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT