CuGenDBv2

Gene ID	Pay0012670
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Reverse transcriptase
Genome location	chr06:20607030..20607652
RNA-Seq Expression	Pay0012670
Synteny	Pay0012670
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR016197 - Chromo-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035203.1 pol protein [Cucumis melo var. makuwa]

2.1e-77

74.76

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Query:  MAPFEALYGK--------------------------------------SQSRQKSYADVRRKNLEFEVGDMIFLKVAPMKGVLRFERRGKLSPRFVGSFE
        MAPFEALYGK                                      SQSRQKSYADVRRK+LEFEVGDM+FLKVAPM+GVLRF ++GKLSPRFVG FE
Subjt:  MAPFEALYGK--------------------------------------SQSRQKSYADVRRKNLEFEVGDMIFLKVAPMKGVLRFERRGKLSPRFVGSFE

Query:  MLERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLCSREISLVKVLWRNHGVEEATWEREEDMQAQ
        +LERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDF+PLQ+SENLSYEEQPVE+LAREVKKLCSREISLVKVLW+NHGVEEATWE+EEDM+AQ
Subjt:  MLERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLCSREISLVKVLWRNHGVEEATWEREEDMQAQ

Query:  YPELFE
        YPELFE
Subjt:  YPELFE

KAA0036938.1 pol protein [Cucumis melo var. makuwa]

1.2e-77

85.96

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Query:  MAPFEALYG---------KSQSRQKSYADVRRKNLEFEVGDMIFLKVAPMKGVLRFERRGKLSPRFVGSFEMLERIGPVAYRLALPPSFSAVHDVFHVSM
        MAPF+ALY           +QSRQKSYADVRRKNLEF VGDM+FLKV PMKGVLRFE++GKL PRFVG FE+LERIGPVAYRLALPPSFSAVHDVFHVSM
Subjt:  MAPFEALYG---------KSQSRQKSYADVRRKNLEFEVGDMIFLKVAPMKGVLRFERRGKLSPRFVGSFEMLERIGPVAYRLALPPSFSAVHDVFHVSM

Query:  LRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLCSREISLVKVLWRNHGVEEATWEREEDMQAQYPELFED
        LRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKL SREISL+KVLWRNHGVEEATWEREEDM+AQY ELFED
Subjt:  LRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLCSREISLVKVLWRNHGVEEATWEREEDMQAQYPELFED

KAA0051386.1 putative Retrotransposon protein [Cucumis melo var. makuwa]

4.3e-78

75.85

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Query:  MAPFEALYGK--------------------------------------SQSRQKSYADVRRKNLEFEVGDMIFLKVAPMKGVLRFERRGKLSPRFVGSFE
        MAPFEALYGK                                      +QSRQKSYADVRRKNLEFEVGDM+FLKVAPMKGVLRF ++GKLSPRFVG FE
Subjt:  MAPFEALYGK--------------------------------------SQSRQKSYADVRRKNLEFEVGDMIFLKVAPMKGVLRFERRGKLSPRFVGSFE

Query:  MLERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLCSREISLVKVLWRNHGVEEATWEREEDMQAQ
        +LERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLQISENLSYEEQPVE+LAREVKKL SREISLVK+LW+NHGVEEATWEREEDM+AQ
Subjt:  MLERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLCSREISLVKVLWRNHGVEEATWEREEDMQAQ

Query:  YPELFED
        YPELFED
Subjt:  YPELFED

KAA0063370.1 pol protein [Cucumis melo var. makuwa]

8.0e-77

75.36

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Query:  MAPFEALYGK--------------------------------------SQSRQKSYADVRRKNLEFEVGDMIFLKVAPMKGVLRFERRGKLSPRFVGSFE
        MAPFEALYGK                                      +QSRQKSYADVRRK+LEFEVGDM+FLKVAPMKGVLRF ++GKLSPRFVG FE
Subjt:  MAPFEALYGK--------------------------------------SQSRQKSYADVRRKNLEFEVGDMIFLKVAPMKGVLRFERRGKLSPRFVGSFE

Query:  MLERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLCSREISLVKVLWRNHGVEEATWEREEDMQAQ
        +LERIGPVAYRLALPPSFS VHDVFHVSMLRRYVADPTHVVDFEPLQISENLSYEEQPVE+LAREVKKL SREISLVKVLWRNHGVEEATWEREEDM+A 
Subjt:  MLERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLCSREISLVKVLWRNHGVEEATWEREEDMQAQ

Query:  YPELFED
        YPELFED
Subjt:  YPELFED

KAA0067491.1 pol protein [Cucumis melo var. makuwa]

1.2e-77

74.88

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Query:  MAPFEALYGK--------------------------------------SQSRQKSYADVRRKNLEFEVGDMIFLKVAPMKGVLRFERRGKLSPRFVGSFE
        MAPFEALYGK                                      +Q+RQKSY DVRRK+LEFEVGDM+FLKVAPMKGVLRFE++GKLSPRFVG FE
Subjt:  MAPFEALYGK--------------------------------------SQSRQKSYADVRRKNLEFEVGDMIFLKVAPMKGVLRFERRGKLSPRFVGSFE

Query:  MLERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLCSREISLVKVLWRNHGVEEATWEREEDMQAQ
        +LERIGPVAYRLALP SFS VHDVFHVSMLRRYVADPTHVVDFEPLQ+SENLSYEEQPVEILAREVKKLCSREISLVKVLW+NHGVEEATWEREEDM+AQ
Subjt:  MLERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLCSREISLVKVLWRNHGVEEATWEREEDMQAQ

Query:  YPELFED
        YPELFED
Subjt:  YPELFED

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SXB7 Pol protein

1.0e-77

74.76

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Query:  MAPFEALYGK--------------------------------------SQSRQKSYADVRRKNLEFEVGDMIFLKVAPMKGVLRFERRGKLSPRFVGSFE
        MAPFEALYGK                                      SQSRQKSYADVRRK+LEFEVGDM+FLKVAPM+GVLRF ++GKLSPRFVG FE
Subjt:  MAPFEALYGK--------------------------------------SQSRQKSYADVRRKNLEFEVGDMIFLKVAPMKGVLRFERRGKLSPRFVGSFE

Query:  MLERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLCSREISLVKVLWRNHGVEEATWEREEDMQAQ
        +LERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDF+PLQ+SENLSYEEQPVE+LAREVKKLCSREISLVKVLW+NHGVEEATWE+EEDM+AQ
Subjt:  MLERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLCSREISLVKVLWRNHGVEEATWEREEDMQAQ

Query:  YPELFE
        YPELFE
Subjt:  YPELFE

A0A5A7T2C9 Pol protein

6.0e-78

85.96

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Query:  MAPFEALYG---------KSQSRQKSYADVRRKNLEFEVGDMIFLKVAPMKGVLRFERRGKLSPRFVGSFEMLERIGPVAYRLALPPSFSAVHDVFHVSM
        MAPF+ALY           +QSRQKSYADVRRKNLEF VGDM+FLKV PMKGVLRFE++GKL PRFVG FE+LERIGPVAYRLALPPSFSAVHDVFHVSM
Subjt:  MAPFEALYG---------KSQSRQKSYADVRRKNLEFEVGDMIFLKVAPMKGVLRFERRGKLSPRFVGSFEMLERIGPVAYRLALPPSFSAVHDVFHVSM

Query:  LRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLCSREISLVKVLWRNHGVEEATWEREEDMQAQYPELFED
        LRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKL SREISL+KVLWRNHGVEEATWEREEDM+AQY ELFED
Subjt:  LRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLCSREISLVKVLWRNHGVEEATWEREEDMQAQYPELFED

A0A5A7UB12 Reverse transcriptase

2.1e-78

75.85

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Query:  MAPFEALYGK--------------------------------------SQSRQKSYADVRRKNLEFEVGDMIFLKVAPMKGVLRFERRGKLSPRFVGSFE
        MAPFEALYGK                                      +QSRQKSYADVRRKNLEFEVGDM+FLKVAPMKGVLRF ++GKLSPRFVG FE
Subjt:  MAPFEALYGK--------------------------------------SQSRQKSYADVRRKNLEFEVGDMIFLKVAPMKGVLRFERRGKLSPRFVGSFE

Query:  MLERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLCSREISLVKVLWRNHGVEEATWEREEDMQAQ
        +LERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLQISENLSYEEQPVE+LAREVKKL SREISLVK+LW+NHGVEEATWEREEDM+AQ
Subjt:  MLERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLCSREISLVKVLWRNHGVEEATWEREEDMQAQ

Query:  YPELFED
        YPELFED
Subjt:  YPELFED

A0A5A7V809 Reverse transcriptase

3.9e-77

75.36

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Query:  MAPFEALYGK--------------------------------------SQSRQKSYADVRRKNLEFEVGDMIFLKVAPMKGVLRFERRGKLSPRFVGSFE
        MAPFEALYGK                                      +QSRQKSYADVRRK+LEFEVGDM+FLKVAPMKGVLRF ++GKLSPRFVG FE
Subjt:  MAPFEALYGK--------------------------------------SQSRQKSYADVRRKNLEFEVGDMIFLKVAPMKGVLRFERRGKLSPRFVGSFE

Query:  MLERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLCSREISLVKVLWRNHGVEEATWEREEDMQAQ
        +LERIGPVAYRLALPPSFS VHDVFHVSMLRRYVADPTHVVDFEPLQISENLSYEEQPVE+LAREVKKL SREISLVKVLWRNHGVEEATWEREEDM+A 
Subjt:  MLERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLCSREISLVKVLWRNHGVEEATWEREEDMQAQ

Query:  YPELFED
        YPELFED
Subjt:  YPELFED

A0A5A7VPJ9 Pol protein

6.0e-78

74.88

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Query:  MAPFEALYGK--------------------------------------SQSRQKSYADVRRKNLEFEVGDMIFLKVAPMKGVLRFERRGKLSPRFVGSFE
        MAPFEALYGK                                      +Q+RQKSY DVRRK+LEFEVGDM+FLKVAPMKGVLRFE++GKLSPRFVG FE
Subjt:  MAPFEALYGK--------------------------------------SQSRQKSYADVRRKNLEFEVGDMIFLKVAPMKGVLRFERRGKLSPRFVGSFE

Query:  MLERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLCSREISLVKVLWRNHGVEEATWEREEDMQAQ
        +LERIGPVAYRLALP SFS VHDVFHVSMLRRYVADPTHVVDFEPLQ+SENLSYEEQPVEILAREVKKLCSREISLVKVLW+NHGVEEATWEREEDM+AQ
Subjt:  MLERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLCSREISLVKVLWRNHGVEEATWEREEDMQAQ

Query:  YPELFED
        YPELFED
Subjt:  YPELFED

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCCCCGTTTGAGGCTCTGTATGGTAAGTCACAGAGCAGACAGAAGAGTTATGCTGATGTACGACGTAAGAACCTCGAGTTTGAGGTGGGAGACATGATCTTTCTGAA
GGTAGCACCTATGAAGGGTGTCTTACGATTTGAAAGAAGAGGAAAGCTGAGTCCACGCTTCGTAGGGTCGTTTGAGATGTTGGAGCGGATTGGTCCCGTGGCTTATCGCT
TGGCGTTGCCCCCATCTTTTTCTGCAGTGCATGATGTATTCCATGTCTCTATGCTGAGGAGGTATGTCGCAGACCCGACGCATGTAGTGGACTTCGAGCCACTGCAAATC
AGCGAGAACTTGAGCTACGAGGAGCAGCCTGTCGAGATCTTGGCAAGGGAAGTCAAGAAGCTCTGTAGTCGAGAAATTTCACTGGTCAAAGTTCTTTGGCGGAATCATGG
AGTTGAAGAGGCCACGTGGGAGAGAGAAGAGGACATGCAAGCCCAGTACCCCGAGCTGTTCGAGGATTAG

mRNA sequence

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Protein sequence

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MAPFEALYGKSQSRQKSYADVRRKNLEFEVGDMIFLKVAPMKGVLRFERRGKLSPRFVGSFEMLERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHVVDFEPLQI
SENLSYEEQPVEILAREVKKLCSREISLVKVLWRNHGVEEATWEREEDMQAQYPELFED

Pay0012670 (gene) of Melon (Payzawat) v1 genome