CuGenDBv2

Gene ID	Pay0012879
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Reverse transcriptase
Genome location	chr01:29435609..29448613
RNA-Seq Expression	Pay0012879
Synteny	Pay0012879
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008194 - UDP-glycosyltransferase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR016197 - Chromo-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031437.1 pol protein [Cucumis melo var. makuwa]

1.7e-97

99.47

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Query:  VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA
        VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA
Subjt:  VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA

Query:  VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        VHDVFHISMLRKYVADPTHVVDFEPLQ+SENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

KAA0032541.1 pol protein [Cucumis melo var. makuwa]

1.3e-97

100

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Query:  VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA
        VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA
Subjt:  VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA

Query:  VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

KAA0048651.1 pol protein [Cucumis melo var. makuwa]

1.3e-97

100

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Query:  VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA
        VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA
Subjt:  VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA

Query:  VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

KAA0061201.1 pol protein [Cucumis melo var. makuwa]

1.3e-97

100

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Query:  VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA
        VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA
Subjt:  VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA

Query:  VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

KAA0063116.1 pol protein [Cucumis melo var. makuwa]

1.3e-97

100

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Query:  VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA
        VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA
Subjt:  VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA

Query:  VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SSL3 Reverse transcriptase

6.3e-98

100

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Query:  VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA
        VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA
Subjt:  VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA

Query:  VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

A0A5A7U4Z5 Pol protein

6.3e-98

100

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Query:  VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA
        VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA
Subjt:  VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA

Query:  VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

A0A5A7V5X5 Pol protein

6.3e-98

100

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Query:  VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA
        VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA
Subjt:  VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA

Query:  VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

A0A5A7V9J8 Pol protein

6.3e-98

100

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Query:  VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA
        VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA
Subjt:  VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA

Query:  VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

A0A5D3CQB5 Reverse transcriptase

8.2e-98

99.47

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Query:  VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA
        VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA
Subjt:  VGEQRMLGPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAA

Query:  VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
        VHDVFHISMLRKYVADPTHVVDFEPLQ+SENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED
Subjt:  VHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEVLAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

SwissProt top hits

e value

%identity

Alignment

P0CV72 Secreted RxLR effector protein 161

1.4e-09

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Query:  PRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLD
        P   H+ A+ R+LRY++ T  +GL+F+   +  L GYSDADWAGD   RRST+GY F L+
Subjt:  PRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLD

P92519 Uncharacterized mitochondrial protein AtMg00810

5.3e-09

46.77

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Query:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYL
        M  P    F  + R+LRYVKGT+ HGL     S L +  + D+DWAG  + RRSTTG+C +L
Subjt:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYL

P93290 Uncharacterized mitochondrial protein AtMg00240

1.4e-09

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Query:  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYC
        +A RT    AV ++L YVKGT+G GL +S+ S L L  ++D+DWA  P  RRS TG+C
Subjt:  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYC

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

1.2e-08

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Query:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYL
        M  P   H  A+ RILRY+ GT  HG+     ++L L  YSDADWAGD  D  ST GY  YL
Subjt:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.2e-08

48.39

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Query:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYL
        M  P   H+ A+ R+LRY+ GT  HG+     ++L L  YSDADWAGD  D  ST GY  YL
Subjt:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYL

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

1.7e-10

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Query:  APRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYL
        APR  H  AV++IL Y+KGT+G GL +SSQ+ + L  +SDA +      RRST GYC +L
Subjt:  APRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYL

ATMG00240.1 Gag-Pol-related retrotransposon family protein

9.8e-11

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Query:  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYC
        +A RT    AV ++L YVKGT+G GL +S+ S L L  ++D+DWA  P  RRS TG+C
Subjt:  AAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYC

ATMG00810.1 DNA/RNA polymerases superfamily protein

3.7e-10

46.77

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Query:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYL
        M  P    F  + R+LRYVKGT+ HGL     S L +  + D+DWAG  + RRSTTG+C +L
Subjt:  MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTGCTCCTCGAACCATCCACTTTACTGCCGTACTTCGTATCCTTCGCTATGTCAAGGGAACCTTGGGACATGGGCTTCAGTTTTCTTCTCAATCCTCTCTTGTATT
ATCTGGCTATTCCGATGCAGATTGGGCTGGGGATCCCACTGATCGGCGTTCTACAACCGGTTACTGCTTCTACTTAGACTCACGAAGTCGGCCCATTTCGTGCCAGGGAA
ATCCACTTACACTGCCAGTTGGAGAGCAGAGGATGCTAGGCCCCGAGTTAGTGCAGACTACCAACGCAGCCATACAGAAGATCCGAGCTCGTATGCTGACAGCACAGAGC
AGACAGAAGAGTTATGCTGATGTACGACGTAAGGACCTCGAGTTTGAAGTGGGAGATATGGTCTTTCTGAAGGTAGCACCCATGAAGGGTGTTCTGAGGTTCGCGAAGAA
GGGGAAGCTGAGTCCACGCTTCGTAGGGCCGTTCGAGATACTGGAGCGGATTGGCCCCGTGGCTTATCGCTTGGCGCTACCCCCATCTTTTGCGGCAGTGCATGACGTAT
TCCATATCTCCATGCTGAGGAAATATGTCGCAGACCCAACACATGTGGTGGACTTCGAGCCACTACAGATTAGCGAGAACTTGAGCTACGAGGAGCAGCCTGTCGAGGTC
CTGGCGAGGGAGGTCAAGAAGCTTCGCAGTCGAGAAATTCCACTGGTCAAAATCCTTTGGCAGAACCATGGAGTGGAAGAGGCCACGTGGGAGAAAGAAGAGGACATGAG
AGCCCAGTACCCCGAGCTGTTCGAGGATTAG

mRNA sequence

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Protein sequence

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MAAPRTIHFTAVLRILRYVKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCFYLDSRSRPISCQGNPLTLPVGEQRMLGPELVQTTNAAIQKIRARMLTAQS
RQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAKKGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQISENLSYEEQPVEV
LAREVKKLRSREIPLVKILWQNHGVEEATWEKEEDMRAQYPELFED

Pay0012879 (gene) of Melon (Payzawat) v1 genome