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Pay0012902 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0012902
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr10:5945970..5946281
RNA-Seq ExpressionPay0012902
SyntenyPay0012902
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0071704 - organic substance metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031743.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]1.6e-2256.31Show/hide
Query:  MVLEILRANELYANLRKCSFAKEKVNYLGHVISEKGA--------------------EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEATA
        MVL++LR +ELYAN +KC FA+EK+ YLGHVIS +G                     E+RGFLGLTGYYRRFV NYG+IA  LTQLLK G F W EEAT 
Subjt:  MVLEILRANELYANLRKCSFAKEKVNYLGHVISEKGA--------------------EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEATA

Query:  SFE
        +F+
Subjt:  SFE

KAA0033855.1 ty3-gypsy retroelement transposase [Cucumis melo var. makuwa]4.3e-2364.58Show/hide
Query:  ANELYANLRKCSFAKEKVNYLGHVISEKGA--------------------EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEATASFE
        ANELYANL KC+FAKE+V YLGHVI EK                      EVRGFLGLTGYYRRFV NYGSI G LTQL K+GSFKWNEEA  SFE
Subjt:  ANELYANLRKCSFAKEKVNYLGHVISEKGA--------------------EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEATASFE

TYK04972.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]9.9e-2867.96Show/hide
Query:  MVLEILRANELYANLRKCSFAKEKVNYLGHVISEKGA--------------------EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEATA
        ++LEILRANELYANL KC+FAK++VNYLGHVISEKG                     EVRGFLGLT YY RF HNYGSIAG LTQLLKNGSF WNEEATA
Subjt:  MVLEILRANELYANLRKCSFAKEKVNYLGHVISEKGA--------------------EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEATA

Query:  SFE
        SF+
Subjt:  SFE

TYK18318.1 ty3-gypsy retroelement transposase [Cucumis melo var. makuwa]3.0e-2464.95Show/hide
Query:  RANELYANLRKCSFAKEKVNYLGHVISEKGA--------------------EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEATASFE
        RAN LYANL KCSFAKE+V YLGH+ISEKG                     EVRGFLGLT YYRRF+ NYGS AG LTQLLKNG+FKWNEEA  SFE
Subjt:  RANELYANLRKCSFAKEKVNYLGHVISEKGA--------------------EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEATASFE

XP_016902731.1 PREDICTED: uncharacterized mitochondrial protein AtMg00860-like [Cucumis melo]3.7e-3580.58Show/hide
Query:  MVLEILRANELYANLRKCSFAKEKVNYLGHVISEKGA--------------------EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEATA
        MVLEILRANELYANLRKCSFAKEKVNYLGHVISEKGA                    EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEATA
Subjt:  MVLEILRANELYANLRKCSFAKEKVNYLGHVISEKGA--------------------EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEATA

Query:  SFE
        SFE
Subjt:  SFE

TrEMBL top hitse value%identityAlignment
A0A1S4E3D0 uncharacterized mitochondrial protein AtMg00860-like1.8e-3580.58Show/hide
Query:  MVLEILRANELYANLRKCSFAKEKVNYLGHVISEKGA--------------------EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEATA
        MVLEILRANELYANLRKCSFAKEKVNYLGHVISEKGA                    EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEATA
Subjt:  MVLEILRANELYANLRKCSFAKEKVNYLGHVISEKGA--------------------EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEATA

Query:  SFE
        SFE
Subjt:  SFE

A0A5A7SND0 Transposon Ty3-I Gag-Pol polyprotein7.9e-2356.31Show/hide
Query:  MVLEILRANELYANLRKCSFAKEKVNYLGHVISEKGA--------------------EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEATA
        MVL++LR +ELYAN +KC FA+EK+ YLGHVIS +G                     E+RGFLGLTGYYRRFV NYG+IA  LTQLLK G F W EEAT 
Subjt:  MVLEILRANELYANLRKCSFAKEKVNYLGHVISEKGA--------------------EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEATA

Query:  SFE
        +F+
Subjt:  SFE

A0A5A7SXE3 Ty3-gypsy retroelement transposase2.1e-2364.58Show/hide
Query:  ANELYANLRKCSFAKEKVNYLGHVISEKGA--------------------EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEATASFE
        ANELYANL KC+FAKE+V YLGHVI EK                      EVRGFLGLTGYYRRFV NYGSI G LTQL K+GSFKWNEEA  SFE
Subjt:  ANELYANLRKCSFAKEKVNYLGHVISEKGA--------------------EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEATASFE

A0A5D3C1B9 Transposon Tf2-6 polyprotein4.8e-2867.96Show/hide
Query:  MVLEILRANELYANLRKCSFAKEKVNYLGHVISEKGA--------------------EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEATA
        ++LEILRANELYANL KC+FAK++VNYLGHVISEKG                     EVRGFLGLT YY RF HNYGSIAG LTQLLKNGSF WNEEATA
Subjt:  MVLEILRANELYANLRKCSFAKEKVNYLGHVISEKGA--------------------EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEATA

Query:  SFE
        SF+
Subjt:  SFE

A0A5D3D447 Ty3-gypsy retroelement transposase1.4e-2464.95Show/hide
Query:  RANELYANLRKCSFAKEKVNYLGHVISEKGA--------------------EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEATASFE
        RAN LYANL KCSFAKE+V YLGH+ISEKG                     EVRGFLGLT YYRRF+ NYGS AG LTQLLKNG+FKWNEEA  SFE
Subjt:  RANELYANLRKCSFAKEKVNYLGHVISEKGA--------------------EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEATASFE

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.66.9e-0835.23Show/hide
Query:  MVLEILRANELYANLRKCSFAKEKVNYLGHVISEKG--------------------AEVRGFLGLTGYYRRFVHNYGSIAGSLTQLLK
        +V E L    L   L KC F K++  +LGHV++  G                     E++ FLGLTGYYR+F+ N+  IA  +T+ LK
Subjt:  MVLEILRANELYANLRKCSFAKEKVNYLGHVISEKG--------------------AEVRGFLGLTGYYRRFVHNYGSIAGSLTQLLK

P10401 Retrovirus-related Pol polyprotein from transposon gypsy9.3e-0533.7Show/hide
Query:  VLEILRANELYANLRKCSFAKEKVNYLGHVISEKGA--------------------EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLK--NGS
        VL+ L    +  +  K  F KE V YLG ++S+ G                     +VR FLGL  YYR F+ ++ +IA  +T +LK  NGS
Subjt:  VLEILRANELYANLRKCSFAKEKVNYLGHVISEKGA--------------------EVRGFLGLTGYYRRFVHNYGSIAGSLTQLLK--NGS

P20825 Retrovirus-related Pol polyprotein from transposon 2972.4e-0836.36Show/hide
Query:  MVLEILRANELYANLRKCSFAKEKVNYLGHVISEKG--------------------AEVRGFLGLTGYYRRFVHNYGSIAGSLTQLLK
        +V   L    L   L KC F K++ N+LGH+++  G                     E+R FLGLTGYYR+F+ NY  IA  +T  LK
Subjt:  MVLEILRANELYANLRKCSFAKEKVNYLGHVISEKG--------------------AEVRGFLGLTGYYRRFVHNYGSIAGSLTQLLK

P92523 Uncharacterized mitochondrial protein AtMg008608.1e-1744.76Show/hide
Query:  MVLEILRANELYANLRKCSFAKEKVNYLG--HVISEKG--------------------AEVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEA
        MVL+I   ++ YAN +KC+F + ++ YLG  H+IS +G                     E+RGFLGLTGYYRRFV NYG I   LT+LLK  S KW E A
Subjt:  MVLEILRANELYANLRKCSFAKEKVNYLG--HVISEKG--------------------AEVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEA

Query:  TASFE
          +F+
Subjt:  TASFE

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus9.3e-0529.55Show/hide
Query:  MVLEILRANELYANLRKCSFAKEKVNYLGHVISEKG--------------------AEVRGFLGLTGYYRRFVHNYGSIAGSLTQLLK
        +VL  L    L  NL K  F   +V +LG++++  G                     E++ FLG+T YYR+F+ +Y  +A  LT L +
Subjt:  MVLEILRANELYANLRKCSFAKEKVNYLGHVISEKG--------------------AEVRGFLGLTGYYRRFVHNYGSIAGSLTQLLK

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein5.8e-1844.76Show/hide
Query:  MVLEILRANELYANLRKCSFAKEKVNYLG--HVISEKG--------------------AEVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEA
        MVL+I   ++ YAN +KC+F + ++ YLG  H+IS +G                     E+RGFLGLTGYYRRFV NYG I   LT+LLK  S KW E A
Subjt:  MVLEILRANELYANLRKCSFAKEKVNYLG--HVISEKG--------------------AEVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEA

Query:  TASFE
          +F+
Subjt:  TASFE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTTGGAAATTCTGAGAGCAAATGAGTTGTATGCTAATCTAAGAAAGTGCAGTTTTGCTAAGGAGAAAGTGAATTACTTGGGACATGTTATATCTGAAAAAGGAGC
GGAAGTAAGAGGATTTCTGGGTTTAACCGGATATTACCGTAGATTTGTGCACAATTATGGCAGCATAGCAGGGTCACTTACTCAACTATTGAAGAATGGGAGTTTCAAGT
GGAATGAAGAAGCTACAGCCTCATTTGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGTTGGAAATTCTGAGAGCAAATGAGTTGTATGCTAATCTAAGAAAGTGCAGTTTTGCTAAGGAGAAAGTGAATTACTTGGGACATGTTATATCTGAAAAAGGAGC
GGAAGTAAGAGGATTTCTGGGTTTAACCGGATATTACCGTAGATTTGTGCACAATTATGGCAGCATAGCAGGGTCACTTACTCAACTATTGAAGAATGGGAGTTTCAAGT
GGAATGAAGAAGCTACAGCCTCATTTGAATAG
Protein sequenceShow/hide protein sequence
MVLEILRANELYANLRKCSFAKEKVNYLGHVISEKGAEVRGFLGLTGYYRRFVHNYGSIAGSLTQLLKNGSFKWNEEATASFE