CuGenDBv2

Gene ID	Pay0013251
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	General transcription factor IIH subunit 5-like
Genome location	chr06:33176943..33179509
RNA-Seq Expression	Pay0013251
Synteny	Pay0013251
Gene Ontology terms	GO:0006294 - nucleotide-excision repair, preincision complex assembly (biological process) GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain (biological process) GO:0000439 - transcription factor TFIIH core complex (cellular component) GO:0005669 - transcription factor TFIID complex (cellular component) GO:0005675 - transcription factor TFIIH holo complex (cellular component)
InterPro domains	IPR009400 - TFIIH subunit TTDA/Tfb5 IPR035935 - TFB5-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596831.1 General transcription and DNA repair factor IIH subunit TFB5, partial [Cucurbita argyrosperma subsp. sororia]

1.7e-28

91.43

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Query:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        MVNAIKG+FISCD+PM QFIINYNASLPASHRFIIHILDNTHMFVQP+VADMIRNA+SEFRDQ SYEKPT
Subjt:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

XP_004147953.1 general transcription and DNA repair factor IIH subunit TFB5 [Cucumis sativus]

8.0e-31

97.14

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Query:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        MVNAIKGMFISCD+PMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFR+QISYEKPT
Subjt:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

XP_008448918.1 PREDICTED: RNA polymerase II transcription factor B subunit 5 [Cucumis melo]

2.1e-31

100

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Query:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
Subjt:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

XP_022943513.1 RNA polymerase II transcription factor B subunit 5 [Cucurbita moschata]

1.7e-28

91.43

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Query:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        MVNAIKG+FISCD+PM QFIINYNASLPASHRFIIHILDNTHMFVQP+VADMIRNA+SEFRDQ SYEKPT
Subjt:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

XP_038876808.1 general transcription and DNA repair factor IIH subunit TFB5 [Benincasa hispida]

1.4e-30

97.14

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Query:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        MVNAIKG+FISCDVPMAQFIINYNASLP SHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
Subjt:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L4F5 Uncharacterized protein

3.9e-31

97.14

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Query:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        MVNAIKGMFISCD+PMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFR+QISYEKPT
Subjt:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

A0A1S3BK87 RNA polymerase II transcription factor B subunit 5

1.0e-31

100

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Query:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
Subjt:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

A0A6J1DFN4 RNA polymerase II transcription factor B subunit 5

2.0e-27

91.43

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Query:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        MVNAIKG+FISCDVPMAQFIINYNASLPAS RFIIHILDNTHMFVQP VA MI+NAISEFRDQ SYEKPT
Subjt:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

A0A6J1FX17 RNA polymerase II transcription factor B subunit 5

8.1e-29

91.43

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Query:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        MVNAIKG+FISCD+PM QFIINYNASLPASHRFIIHILDNTHMFVQP+VADMIRNA+SEFRDQ SYEKPT
Subjt:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

A0A6J1L2N1 RNA polymerase II transcription factor B subunit 5 isoform X1

8.1e-29

91.43

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Query:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        MVNAIKG+FISCD+PM QFIINYNASLPASHRFIIHILDNTHMFVQP+VADMIRNA+SEFRDQ SYEKPT
Subjt:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

SwissProt top hits

e value

%identity

Alignment

Q2T9Z5 General transcription factor IIH subunit 5

2.4e-06

34.85

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Query:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISY
        MVN +KG+ I CD  M QF++  + S     +FII  +D+TH+FV   + ++++  + E  DQ ++
Subjt:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISY

Q5ZKH0 General transcription factor IIH subunit 5

8.4e-07

37.88

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Query:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISY
        MVN +KG+ I CD  M QF++  + S     +FII  LD TH+FV   + + ++  + E  DQ S+
Subjt:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISY

Q6NNM0 General transcription and DNA repair factor IIH subunit TFB5

3.1e-25

72.86

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Query:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        MVNAIKG+F+SCD+PM QFI+N N S+P S +FIIH+LD+TH+FVQPHV  MIR+AIS+FRDQ SYEKPT
Subjt:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

Q6ZYL4 General transcription factor IIH subunit 5

2.4e-06

34.85

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Query:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISY
        MVN +KG+ I CD  M QF++  + S     +FII  +D+TH+FV   + ++++  + E  DQ ++
Subjt:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISY

Q8K2X8 General transcription factor IIH subunit 5

5.5e-06

33.33

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Query:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISY
        MVN +KG+ I CD  M QF++  + +     +FII  +D+TH+FV   + ++++  + E  DQ ++
Subjt:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISY

Arabidopsis top hits

e value

%identity

Alignment

AT1G12400.1 Nucleotide excision repair, TFIIH, subunit TTDA

2.2e-26

72.86

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Query:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        MVNAIKG+F+SCD+PM QFI+N N S+P S +FIIH+LD+TH+FVQPHV  MIR+AIS+FRDQ SYEKPT
Subjt:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

AT1G62886.1 Nucleotide excision repair, TFIIH, subunit TTDA

1.7e-18

62.86

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Query:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHI--LDNTHMFVQPHVADMIRNAISEFRDQISYEK
        MVN+IKG+FISCDVPMAQFI + N SLPAS +FII +  LD T MFV+P+  +MIR+A+ +FRD+ SY K
Subjt:  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHI--LDNTHMFVQPHVADMIRNAISEFRDQISYEK

Sequences

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CDS sequence

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ATGGTTAATGCTATTAAAGGGATGTTCATCTCCTGTGACGTACCTATGGCACAATTTATCATCAATTACAATGCCTCCTTGCCTGCATCCCATAGATTTATAATCCATAT
ACTGGATAACACTCACATGTTTGTGCAACCCCATGTAGCTGACATGATTCGGAACGCCATCTCAGAATTTCGAGATCAGATTTCTTATGAGAAACCTACTTGA

mRNA sequence

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GGACACTCTTTGTACAATCCCATCGAGGATGAAGACTAGGAGCAAACAAAATTCGAGAGAAACTATAAATACAAGAGTAAGTTAATTAGACTAATCGAAGGTATTTTCAA
ATGAACCAAAATATATGAAATATACATTGGGAGTCTGTGTTTAAGAGAACCTCTAAAGAAAAGAAAGAAAAGGTCTTTCTTCCCGTCGGCCACACTCTCTCGCTTGATCG
CACAGCAAGGCCATCCCCCCATCTCCGATCGTTCTGCTGCCGGCCGGCCAGTCGTGTAGAATTGCCAGCAGTCCGCCGGAGGGACTGAGTTTCAGTTAAATTTGTTCTGC
TGCTGTTTGAGGGACGGCGTTTTTGACATCATGGTTAATGCTATTAAAGGGATGTTCATCTCCTGTGACGTACCTATGGCACAATTTATCATCAATTACAATGCCTCCTT
GCCTGCATCCCATAGATTTATAATCCATATACTGGATAACACTCACATGTTTGTGCAACCCCATGTAGCTGACATGATTCGGAACGCCATCTCAGAATTTCGAGATCAGA
TTTCTTATGAGAAACCTACTTGAGCCATGTTGTTAATCGAAGTTTCACTATATAATTGTATTTTTTTTTTTTTTTTTGGAGTTATAGATTTTGCTTCTAAAATTTATTGT
GCATTTAAACAGTTTTACTTTGTAGTGATGTCTCTCCACTATGCAATGTATATCATCTGACTTGAAGATCTAAAATGGCAGAGACTGGTCATTTTTAAGGTGGACACCAA
ATTTAAAATAATATATTTCTCTTTAAAAAGG

Protein sequence

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MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

Pay0013251 (gene) of Melon (Payzawat) v1 genome