CuGenDBv2

Gene ID	Pay0013324
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ty1-copia retrotransposon protein
Genome location	chr07:19422514..19423094
RNA-Seq Expression	Pay0013324
Synteny	Pay0013324
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0051006.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

3.9e-85

86.01

Show/hide

Query:  MSIKTSNKILPGLSKVEPLDGTNYRCWSQKLLIFFEQLEVDYVLTTDFPSSDPPTIISTSSDLESSTRPSTIVAVSDQVKKDQVIDPEKYAKDNKTVRGH
        MSIKTSNKILP LSK+EPLDGTNYR WSQKLLIFFEQLEVDYVLTTD P+SDPPT  STSSD ESST P T VAV+DQVKKDQVIDPEKYAKDNKTVRGH
Subjt:  MSIKTSNKILPGLSKVEPLDGTNYRCWSQKLLIFFEQLEVDYVLTTDFPSSDPPTIISTSSDLESSTRPSTIVAVSDQVKKDQVIDPEKYAKDNKTVRGH

Query:  LLNHMLDPMFDL------------TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVQSEGMKMCEILQANVLLEKFPPS
        LLNHM DPMFDL            TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPV+EQIHEYENLVANV SEGMKMCEILQANVLLEKFPPS
Subjt:  LLNHMLDPMFDL------------TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVQSEGMKMCEILQANVLLEKFPPS

KAA0056761.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

6.6e-85

86.01

Show/hide

Query:  MSIKTSNKILPGLSKVEPLDGTNYRCWSQKLLIFFEQLEVDYVLTTDFPSSDPPTIISTSSDLESSTRPSTIVAVSDQVKKDQVIDPEKYAKDNKTVRGH
        MSIKTSNKILP LSK+EPLDGTNYR WSQKLLIFFEQLEVDYVLTTD P+SDPPT  STSSD ESST P T VAV+DQVKKDQVIDPEKYAKDNKTVRGH
Subjt:  MSIKTSNKILPGLSKVEPLDGTNYRCWSQKLLIFFEQLEVDYVLTTDFPSSDPPTIISTSSDLESSTRPSTIVAVSDQVKKDQVIDPEKYAKDNKTVRGH

Query:  LLNHMLDPMFDL------------TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVQSEGMKMCEILQANVLLEKFPPS
        LLNHM DPMFDL            TLESRYGGDDAGRKKYVVGKWLQFQM DDKPVVEQIHEYENLVANV SEGMKMCEILQANVLLEKFPPS
Subjt:  LLNHMLDPMFDL------------TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVQSEGMKMCEILQANVLLEKFPPS

KAA0062062.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

1.7e-85

86.53

Show/hide

Query:  MSIKTSNKILPGLSKVEPLDGTNYRCWSQKLLIFFEQLEVDYVLTTDFPSSDPPTIISTSSDLESSTRPSTIVAVSDQVKKDQVIDPEKYAKDNKTVRGH
        MSIKTSNKILP LSK+EPLDGTNYR WSQKLLIFFEQLEVDYVLTTD P+SDPPT  STSSD ESST P T VAV+DQVKKDQVIDPEKYAKDNKTVRGH
Subjt:  MSIKTSNKILPGLSKVEPLDGTNYRCWSQKLLIFFEQLEVDYVLTTDFPSSDPPTIISTSSDLESSTRPSTIVAVSDQVKKDQVIDPEKYAKDNKTVRGH

Query:  LLNHMLDPMFDL------------TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVQSEGMKMCEILQANVLLEKFPPS
        LLNHM DPMFDL            TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANV SEGMKMCEILQANVLLEKFPPS
Subjt:  LLNHMLDPMFDL------------TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVQSEGMKMCEILQANVLLEKFPPS

TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

3.9e-85

86.01

Show/hide

Query:  MSIKTSNKILPGLSKVEPLDGTNYRCWSQKLLIFFEQLEVDYVLTTDFPSSDPPTIISTSSDLESSTRPSTIVAVSDQVKKDQVIDPEKYAKDNKTVRGH
        MSIKTSNKILP LSK+EPLDGTNYR WSQKLLIFFEQLEVDYVLTTD P+SDPPT  STSSD ESST P T VAV+DQVKKDQVIDPEKYAKDNKTVRGH
Subjt:  MSIKTSNKILPGLSKVEPLDGTNYRCWSQKLLIFFEQLEVDYVLTTDFPSSDPPTIISTSSDLESSTRPSTIVAVSDQVKKDQVIDPEKYAKDNKTVRGH

Query:  LLNHMLDPMFDL------------TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVQSEGMKMCEILQANVLLEKFPPS
        LLNHM DPMFDL            TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPV+EQIHEYENLVANV SEGMKMCEILQANVLLEKFPPS
Subjt:  LLNHMLDPMFDL------------TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVQSEGMKMCEILQANVLLEKFPPS

TYK04957.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

1.7e-85

86.53

Show/hide

Query:  MSIKTSNKILPGLSKVEPLDGTNYRCWSQKLLIFFEQLEVDYVLTTDFPSSDPPTIISTSSDLESSTRPSTIVAVSDQVKKDQVIDPEKYAKDNKTVRGH
        MSIKTSNKILP LSK+EPLDGTNYR WSQKLLIFFEQLEVDYVLTTD P+SDPPT  STSSD ESST P T VAV+DQVKKDQVIDPEKYAKDNKTVRGH
Subjt:  MSIKTSNKILPGLSKVEPLDGTNYRCWSQKLLIFFEQLEVDYVLTTDFPSSDPPTIISTSSDLESSTRPSTIVAVSDQVKKDQVIDPEKYAKDNKTVRGH

Query:  LLNHMLDPMFDL------------TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVQSEGMKMCEILQANVLLEKFPPS
        LLNHM DPMFDL            TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANV SEGMKMCEILQANVLLEKFPPS
Subjt:  LLNHMLDPMFDL------------TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVQSEGMKMCEILQANVLLEKFPPS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U9X9 Ty1-copia retrotransposon protein

1.9e-85

86.01

Show/hide

Query:  MSIKTSNKILPGLSKVEPLDGTNYRCWSQKLLIFFEQLEVDYVLTTDFPSSDPPTIISTSSDLESSTRPSTIVAVSDQVKKDQVIDPEKYAKDNKTVRGH
        MSIKTSNKILP LSK+EPLDGTNYR WSQKLLIFFEQLEVDYVLTTD P+SDPPT  STSSD ESST P T VAV+DQVKKDQVIDPEKYAKDNKTVRGH
Subjt:  MSIKTSNKILPGLSKVEPLDGTNYRCWSQKLLIFFEQLEVDYVLTTDFPSSDPPTIISTSSDLESSTRPSTIVAVSDQVKKDQVIDPEKYAKDNKTVRGH

Query:  LLNHMLDPMFDL------------TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVQSEGMKMCEILQANVLLEKFPPS
        LLNHM DPMFDL            TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPV+EQIHEYENLVANV SEGMKMCEILQANVLLEKFPPS
Subjt:  LLNHMLDPMFDL------------TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVQSEGMKMCEILQANVLLEKFPPS

A0A5A7V1I1 Ty1-copia retrotransposon protein

8.4e-86

86.53

Show/hide

Query:  MSIKTSNKILPGLSKVEPLDGTNYRCWSQKLLIFFEQLEVDYVLTTDFPSSDPPTIISTSSDLESSTRPSTIVAVSDQVKKDQVIDPEKYAKDNKTVRGH
        MSIKTSNKILP LSK+EPLDGTNYR WSQKLLIFFEQLEVDYVLTTD P+SDPPT  STSSD ESST P T VAV+DQVKKDQVIDPEKYAKDNKTVRGH
Subjt:  MSIKTSNKILPGLSKVEPLDGTNYRCWSQKLLIFFEQLEVDYVLTTDFPSSDPPTIISTSSDLESSTRPSTIVAVSDQVKKDQVIDPEKYAKDNKTVRGH

Query:  LLNHMLDPMFDL------------TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVQSEGMKMCEILQANVLLEKFPPS
        LLNHM DPMFDL            TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANV SEGMKMCEILQANVLLEKFPPS
Subjt:  LLNHMLDPMFDL------------TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVQSEGMKMCEILQANVLLEKFPPS

A0A5D3BZH6 Ty1-copia retrotransposon protein

8.4e-86

86.53

Show/hide

Query:  MSIKTSNKILPGLSKVEPLDGTNYRCWSQKLLIFFEQLEVDYVLTTDFPSSDPPTIISTSSDLESSTRPSTIVAVSDQVKKDQVIDPEKYAKDNKTVRGH
        MSIKTSNKILP LSK+EPLDGTNYR WSQKLLIFFEQLEVDYVLTTD P+SDPPT  STSSD ESST P T VAV+DQVKKDQVIDPEKYAKDNKTVRGH
Subjt:  MSIKTSNKILPGLSKVEPLDGTNYRCWSQKLLIFFEQLEVDYVLTTDFPSSDPPTIISTSSDLESSTRPSTIVAVSDQVKKDQVIDPEKYAKDNKTVRGH

Query:  LLNHMLDPMFDL------------TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVQSEGMKMCEILQANVLLEKFPPS
        LLNHM DPMFDL            TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANV SEGMKMCEILQANVLLEKFPPS
Subjt:  LLNHMLDPMFDL------------TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVQSEGMKMCEILQANVLLEKFPPS

A0A5D3BZI1 Ty1-copia retrotransposon protein

1.9e-85

86.01

Show/hide

Query:  MSIKTSNKILPGLSKVEPLDGTNYRCWSQKLLIFFEQLEVDYVLTTDFPSSDPPTIISTSSDLESSTRPSTIVAVSDQVKKDQVIDPEKYAKDNKTVRGH
        MSIKTSNKILP LSK+EPLDGTNYR WSQKLLIFFEQLEVDYVLTTD P+SDPPT  STSSD ESST P T VAV+DQVKKDQVIDPEKYAKDNKTVRGH
Subjt:  MSIKTSNKILPGLSKVEPLDGTNYRCWSQKLLIFFEQLEVDYVLTTDFPSSDPPTIISTSSDLESSTRPSTIVAVSDQVKKDQVIDPEKYAKDNKTVRGH

Query:  LLNHMLDPMFDL------------TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVQSEGMKMCEILQANVLLEKFPPS
        LLNHM DPMFDL            TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPV+EQIHEYENLVANV SEGMKMCEILQANVLLEKFPPS
Subjt:  LLNHMLDPMFDL------------TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVQSEGMKMCEILQANVLLEKFPPS

A0A5D3C5T2 Ty1-copia retrotransposon protein

3.2e-85

86.01

Show/hide

Query:  MSIKTSNKILPGLSKVEPLDGTNYRCWSQKLLIFFEQLEVDYVLTTDFPSSDPPTIISTSSDLESSTRPSTIVAVSDQVKKDQVIDPEKYAKDNKTVRGH
        MSIKTSNKILP LSK+EPLDGTNYR WSQKLLIFFEQLEVDYVLTTD P+SDPPT  STSSD ESST P T VAV+DQVKKDQVIDPEKYAKDNKTVRGH
Subjt:  MSIKTSNKILPGLSKVEPLDGTNYRCWSQKLLIFFEQLEVDYVLTTDFPSSDPPTIISTSSDLESSTRPSTIVAVSDQVKKDQVIDPEKYAKDNKTVRGH

Query:  LLNHMLDPMFDL------------TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVQSEGMKMCEILQANVLLEKFPPS
        LLNHM DPMFDL            TLESRYGGDDAGRKKYVVGKWLQFQM DDKPVVEQIHEYENLVANV SEGMKMCEILQANVLLEKFPPS
Subjt:  LLNHMLDPMFDL------------TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVQSEGMKMCEILQANVLLEKFPPS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G00980.1 zinc knuckle (CCHC-type) family protein

9.4e-13

24.44

Show/hide

Query:  KVEPLDGTNYRCWSQKLLIFFEQLEVDYVLTTDFPSSDPPTIISTSSDLESSTRPSTIVAVSDQVKKDQVIDPEKYAKDNKTVRGHLLNHMLDPMFDL--
        K+   DG +Y  W+ ++ +F +QL++ YVL+   PS      I +S   E++ R  T    +           +K+ +D+     HL+N + D ++    
Subjt:  KVEPLDGTNYRCWSQKLLIFFEQLEVDYVLTTDFPSSDPPTIISTSSDLESSTRPSTIVAVSDQVKKDQVIDPEKYAKDNKTVRGHLLNHMLDPMFDL--

Query:  -----------TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVQSEGMKMCEILQANVLLEKFPPS
                    L+  Y  D++  K+  V K+++F+M +++P++EQ+  +  +  ++ S GM + E    + ++ KFPPS
Subjt:  -----------TLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVQSEGMKMCEILQANVLLEKFPPS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCGATCAAGACCTCCAACAAAATCCTACCTGGCCTGTCTAAAGTTGAGCCACTTGACGGAACGAACTACCGCTGTTGGTCTCAAAAGTTGTTAATCTTCTTTGAGCA
ACTAGAAGTTGATTATGTCCTCACTACAGATTTTCCGTCCTCTGACCCTCCAACTATCATTTCAACATCTTCAGATCTAGAATCATCTACGAGGCCTTCTACTATTGTCG
CTGTCTCAGATCAAGTAAAGAAGGACCAAGTGATCGATCCTGAAAAATATGCAAAGGATAACAAGACCGTTCGAGGACACCTGTTAAACCATATGTTAGACCCGATGTTT
GATCTCACCCTGGAATCACGGTATGGAGGAGATGATGCTGGACGAAAGAAATATGTGGTTGGAAAATGGCTACAATTCCAGATGACTGACGACAAGCCAGTCGTGGAACA
AATACATGAGTACGAGAACCTGGTGGCAAACGTCCAGTCTGAAGGCATGAAGATGTGCGAAATACTTCAAGCAAATGTCCTGTTGGAAAAGTTTCCTCCATCCTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MSIKTSNKILPGLSKVEPLDGTNYRCWSQKLLIFFEQLEVDYVLTTDFPSSDPPTIISTSSDLESSTRPSTIVAVSDQVKKDQVIDPEKYAKDNKTVRGHLLNHMLDPMF
DLTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVQSEGMKMCEILQANVLLEKFPPS

Pay0013324 (gene) of Melon (Payzawat) v1 genome