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Pay0013338 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0013338
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionReverse transcriptase
Genome locationchr01:20014986..20015366
RNA-Seq ExpressionPay0013338
SyntenyPay0013338
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051925.1 pol protein [Cucumis melo var. makuwa]7.9e-5397.35Show/hide
Query:  MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLR
        MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHV+MLRRYVADPTHVVDFEP QISENLSY EQPVEILAREVKKLR
Subjt:  MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLR

Query:  SREISLVKVLWRN
        SREISLVKVLWRN
Subjt:  SREISLVKVLWRN
TYK04678.1 pol protein [Cucumis melo var. makuwa]7.9e-5394.74Show/hide
Query:  MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLR
        MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSF AVHDVFHV+M+RRYVADPTHVVDFEP QISENLSY+EQPVEILAREVKKLR
Subjt:  MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLR

Query:  SREISLVKVLWRNH
        SREISLVKV+WRNH
Subjt:  SREISLVKVLWRNH
TYK11711.1 pol protein [Cucumis melo var. makuwa]1.6e-5396.49Show/hide
Query:  MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLR
        MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILER GPVAYRLALPPSFSAVHDVFHV+MLRRYVADPTHVVDFEP QISENLSY+EQPVEILAREVKKLR
Subjt:  MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLR

Query:  SREISLVKVLWRNH
        SREISLVKVLWRNH
Subjt:  SREISLVKVLWRNH
TYK12237.1 pol protein [Cucumis melo var. makuwa]7.9e-5397.35Show/hide
Query:  MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLR
        MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHV+MLRRYVADPTHVVDFEP QISENLSY EQPVEILAREVKKLR
Subjt:  MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLR

Query:  SREISLVKVLWRN
        SREISLVKVLWRN
Subjt:  SREISLVKVLWRN
XP_016900342.1 PREDICTED: uncharacterized protein LOC107990872 [Cucumis melo]3.8e-63100Show/hide
Query:  MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLR
        MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLR
Subjt:  MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLR

Query:  SREISLVKVLWRNHELKRPHGREKRT
        SREISLVKVLWRNHELKRPHGREKRT
Subjt:  SREISLVKVLWRNHELKRPHGREKRT
TrEMBL top hitse value%identityAlignment
A0A1S4DWH9 uncharacterized protein LOC1079908721.8e-63100Show/hide
Query:  MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLR
        MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLR
Subjt:  MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLR

Query:  SREISLVKVLWRNHELKRPHGREKRT
        SREISLVKVLWRNHELKRPHGREKRT
Subjt:  SREISLVKVLWRNHELKRPHGREKRT
A0A5A7UDZ3 Reverse transcriptase3.8e-5397.35Show/hide
Query:  MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLR
        MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHV+MLRRYVADPTHVVDFEP QISENLSY EQPVEILAREVKKLR
Subjt:  MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLR

Query:  SREISLVKVLWRN
        SREISLVKVLWRN
Subjt:  SREISLVKVLWRN
A0A5D3C081 Pol protein3.8e-5394.74Show/hide
Query:  MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLR
        MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSF AVHDVFHV+M+RRYVADPTHVVDFEP QISENLSY+EQPVEILAREVKKLR
Subjt:  MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLR

Query:  SREISLVKVLWRNH
        SREISLVKV+WRNH
Subjt:  SREISLVKVLWRNH
A0A5D3CIQ3 Pol protein7.7e-5496.49Show/hide
Query:  MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLR
        MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILER GPVAYRLALPPSFSAVHDVFHV+MLRRYVADPTHVVDFEP QISENLSY+EQPVEILAREVKKLR
Subjt:  MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLR

Query:  SREISLVKVLWRNH
        SREISLVKVLWRNH
Subjt:  SREISLVKVLWRNH
A0A5D3CJW2 Reverse transcriptase3.8e-5397.35Show/hide
Query:  MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLR
        MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHV+MLRRYVADPTHVVDFEP QISENLSY EQPVEILAREVKKLR
Subjt:  MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLR

Query:  SREISLVKVLWRN
        SREISLVKVLWRN
Subjt:  SREISLVKVLWRN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G42190.1 GAG/POL/ENV polyprotein4.2e-0441.86Show/hide
Query:  YRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENL
        Y+L LP    A H VFHV+MLR+ +    +V+   PP + EN+
Subjt:  YRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCTTTCTGAAGGTAGCACCTATGAAGGGTGTTCTGAGGTTCGAAAAGAAGGGGAAGCTGAGTCCACGCTTCGTAGGACCATTTGAGATACTGGAGCGGATT
GGCCCCGTGGCTTATCGCTTGGCGTTGCCCCCATCTTTTTCTGCAGTGCACGATGTATTCCATGTCACCATGCTGAGGAGGTATGTCGCAGACCCGACGCATGTA
GTGGACTTCGAACCACCGCAAATCAGTGAGAACTTGAGCTACAAGGAGCAGCCTGTCGAGATCTTGGCAAGGGAAGTCAAGAAGCTCCGTAGCCGAGAAATTTCA
CTGGTCAAAGTTCTTTGGCGGAACCATGAGTTGAAGAGGCCACATGGGAGAGAGAAGAGGACATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCTTTCTGAAGGTAGCACCTATGAAGGGTGTTCTGAGGTTCGAAAAGAAGGGGAAGCTGAGTCCACGCTTCGTAGGACCATTTGAGATACTGGAGCGGATT
GGCCCCGTGGCTTATCGCTTGGCGTTGCCCCCATCTTTTTCTGCAGTGCACGATGTATTCCATGTCACCATGCTGAGGAGGTATGTCGCAGACCCGACGCATGTA
GTGGACTTCGAACCACCGCAAATCAGTGAGAACTTGAGCTACAAGGAGCAGCCTGTCGAGATCTTGGCAAGGGAAGTCAAGAAGCTCCGTAGCCGAGAAATTTCA
CTGGTCAAAGTTCTTTGGCGGAACCATGAGTTGAAGAGGCCACATGGGAGAGAGAAGAGGACATGA
Protein sequenceShow/hide protein sequence
MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLRSREIS
LVKVLWRNHELKRPHGREKRT