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Pay0013426 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0013426
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionGag-pol polyprotein
Genome locationchr08:22395639..22395968
RNA-Seq ExpressionPay0013426
SyntenyPay0013426
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040960.1 gag-pol polyprotein [Cucumis melo var. makuwa]6.2e-4689.91Show/hide
Query:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADP
        MSMVGELSCFLGLQIKQKNDGIFISQ+KYAR+MVKKFGLEQARNK+TPAT +VKLTK T GAEVDHKLYRS VG LLYLTASRPDIAYAVGICA YQADP
Subjt:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADP

Query:  CITHLEAVK
         ITHLEAVK
Subjt:  CITHLEAVK

KAA0048226.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.3e-4790.83Show/hide
Query:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADP
        MSM+GELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNK+TPA THVKLTK T GAEVDHKLYRS VGSLLYLTASRPDIAYA+GICA YQADP
Subjt:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADP

Query:  CITHLEAVK
         ITHLE VK
Subjt:  CITHLEAVK

KAA0053137.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.6e-4689.91Show/hide
Query:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADP
        MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGL+QARNK+TPA THVKLTK T+GAEVDHKLYRS VGSLLYLTASRPDIAY VGICA YQADP
Subjt:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADP

Query:  CITHLEAVK
         IT LE VK
Subjt:  CITHLEAVK

TYK08028.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.3e-4790.83Show/hide
Query:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADP
        MSM+GELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNK+TPA THVKLTK T GAEVDHKLYRS VGSLLYLTASRPDIAYA+GICA YQADP
Subjt:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADP

Query:  CITHLEAVK
         ITHLE VK
Subjt:  CITHLEAVK

XP_016899543.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]1.8e-53100Show/hide
Query:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADP
        MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADP
Subjt:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADP

Query:  CITHLEAVK
        CITHLEAVK
Subjt:  CITHLEAVK

TrEMBL top hitse value%identityAlignment
A0A1S4DU99 uncharacterized mitochondrial protein AtMg00810-like8.7e-54100Show/hide
Query:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADP
        MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADP
Subjt:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADP

Query:  CITHLEAVK
        CITHLEAVK
Subjt:  CITHLEAVK

A0A5A7TCF7 Gag-pol polyprotein3.0e-4689.91Show/hide
Query:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADP
        MSMVGELSCFLGLQIKQKNDGIFISQ+KYAR+MVKKFGLEQARNK+TPAT +VKLTK T GAEVDHKLYRS VG LLYLTASRPDIAYAVGICA YQADP
Subjt:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADP

Query:  CITHLEAVK
         ITHLEAVK
Subjt:  CITHLEAVK

A0A5A7U1W9 Gag-pol polyprotein1.6e-4790.83Show/hide
Query:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADP
        MSM+GELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNK+TPA THVKLTK T GAEVDHKLYRS VGSLLYLTASRPDIAYA+GICA YQADP
Subjt:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADP

Query:  CITHLEAVK
         ITHLE VK
Subjt:  CITHLEAVK

A0A5D3BPB3 Gag-pol polyprotein1.8e-4689.91Show/hide
Query:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADP
        MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGL+QARNK+TPA THVKLTK T+GAEVDHKLYRS VGSLLYLTASRPDIAY VGICA YQADP
Subjt:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADP

Query:  CITHLEAVK
         IT LE VK
Subjt:  CITHLEAVK

A0A5D3CA21 Gag-pol polyprotein1.6e-4790.83Show/hide
Query:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADP
        MSM+GELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNK+TPA THVKLTK T GAEVDHKLYRS VGSLLYLTASRPDIAYA+GICA YQADP
Subjt:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADP

Query:  CITHLEAVK
         ITHLE VK
Subjt:  CITHLEAVK

SwissProt top hitse value%identityAlignment
P0CV72 Secreted RxLR effector protein 1612.7e-0447.62Show/hide
Query:  YRSTVGSLLYL-TASRPDIAYAVGICASYQADPCITHLEAVK
        Y S VG+++YL   +RPD+A AVG+ + + +DPC TH +A+K
Subjt:  YRSTVGSLLYL-TASRPDIAYAVGICASYQADPCITHLEAVK

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-1034.75Show/hide
Query:  MSMVGELSCFLGLQIKQKNDG--IFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHK------LYRSTVGSLLY-LTASRPDIAYAVG
        M  +G     LG++I ++     +++SQEKY   ++++F ++ A+   TP   H+KL+K      V+ K       Y S VGSL+Y +  +RPDIA+AVG
Subjt:  MSMVGELSCFLGLQIKQKNDG--IFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHK------LYRSTVGSLLY-LTASRPDIAYAVG

Query:  ICASYQADPCITHLEAVK
        + + +  +P   H EAVK
Subjt:  ICASYQADPCITHLEAVK

P92519 Uncharacterized mitochondrial protein AtMg008106.7e-1136.36Show/hide
Query:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEV-DHKLYRSTVGSLLYLTASRPDIAYAVGICASYQAD
        M  +G +  FLG+QIK    G+F+SQ KYA  ++   G+   +   TP    +KL      A+  D   +RS VG+L YLT +RPDI+YAV I      +
Subjt:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEV-DHKLYRSTVGSLLYLTASRPDIAYAVGICASYQAD

Query:  PCITHLEAVK
        P +   + +K
Subjt:  PCITHLEAVK

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE13.7e-0934.62Show/hide
Query:  ELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADPCITHL
        EL  FLG++ K+   G+ +SQ +Y  +++ +  +  A+   TP     KL+  +     D   YR  VGSL YL  +RPDI+YAV   + +   P   HL
Subjt:  ELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADPCITHL

Query:  EAVK
        +A+K
Subjt:  EAVK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.2e-0934.62Show/hide
Query:  ELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADPCITHL
        +L  FLG++ K+   G+ +SQ +Y  +++ +  +  A+   TP  T  KLT  +     D   YR  VGSL YL  +RPD++YAV   + Y   P   H 
Subjt:  ELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADPCITHL

Query:  EAVK
         A+K
Subjt:  EAVK

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 85.3e-1135.24Show/hide
Query:  VGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADPCIT
        +G L  FLGL+I +   GI I Q KYA +++ + GL   +    P    V  +  + G  VD K YR  +G L+YL  +R DI++AV   + +   P + 
Subjt:  VGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADPCIT

Query:  HLEAV
        H +AV
Subjt:  HLEAV

ATMG00810.1 DNA/RNA polymerases superfamily protein4.8e-1236.36Show/hide
Query:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEV-DHKLYRSTVGSLLYLTASRPDIAYAVGICASYQAD
        M  +G +  FLG+QIK    G+F+SQ KYA  ++   G+   +   TP    +KL      A+  D   +RS VG+L YLT +RPDI+YAV I      +
Subjt:  MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEV-DHKLYRSTVGSLLYLTASRPDIAYAVGICASYQAD

Query:  PCITHLEAVK
        P +   + +K
Subjt:  PCITHLEAVK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCATGGTTGGAGAGCTTTCATGTTTTCTGGGACTTCAAATTAAGCAAAAGAATGATGGCATTTTCATATCACAAGAAAAGTATGCCAGGAATATGGTCAAA
AAGTTTGGTTTGGAACAGGCTCGAAATAAGCAGACTCCAGCTACGACACATGTTAAACTTACAAAAGGCACTAAAGGTGCTGAAGTTGATCACAAACTTTACAGG
AGTACAGTAGGCAGCCTATTATACTTAACAGCAAGTCGACCTGACATAGCTTATGCTGTAGGAATATGTGCTAGTTATCAGGCGGATCCCTGCATCACTCACCTA
GAAGCTGTTAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCATGGTTGGAGAGCTTTCATGTTTTCTGGGACTTCAAATTAAGCAAAAGAATGATGGCATTTTCATATCACAAGAAAAGTATGCCAGGAATATGGTCAAA
AAGTTTGGTTTGGAACAGGCTCGAAATAAGCAGACTCCAGCTACGACACATGTTAAACTTACAAAAGGCACTAAAGGTGCTGAAGTTGATCACAAACTTTACAGG
AGTACAGTAGGCAGCCTATTATACTTAACAGCAAGTCGACCTGACATAGCTTATGCTGTAGGAATATGTGCTAGTTATCAGGCGGATCCCTGCATCACTCACCTA
GAAGCTGTTAAATGA
Protein sequenceShow/hide protein sequence
MSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKQTPATTHVKLTKGTKGAEVDHKLYRSTVGSLLYLTASRPDIAYAVGICASYQADPCITHL
EAVK