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Pay0013502 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0013502
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionPol protein
Genome locationchr08:17592457..17597007
RNA-Seq ExpressionPay0013502
SyntenyPay0013502
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR016197 - Chromo-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036633.1 pol protein [Cucumis melo var. makuwa]3.3e-8299.37Show/hide
Query:  APSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI
        A SRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI
Subjt:  APSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI

Query:  DENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        DENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  DENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

KAA0053367.1 pol protein [Cucumis melo var. makuwa]9.6e-8298.74Show/hide
Query:  APSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI
        A SRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRL LPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI
Subjt:  APSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI

Query:  DENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        DENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  DENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

KAA0056702.1 pol protein [Cucumis melo var. makuwa]2.1e-8198.11Show/hide
Query:  APSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI
        A SRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRL LPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI
Subjt:  APSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI

Query:  DENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        DENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYP+LFEE
Subjt:  DENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

KAA0059807.1 pol protein [Cucumis melo var. makuwa]2.8e-8198.11Show/hide
Query:  APSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI
        A SRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRL LPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI
Subjt:  APSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI

Query:  DENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        DENLSYTEQPVEVL REVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  DENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

XP_016900398.1 PREDICTED: uncharacterized protein LOC107990886 [Cucumis melo]3.2e-8585.64Show/hide
Query:  MPPRRGARRGGRGGRGRGAGRVQPEVQPVAKATDPAAPSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRL
        MP RRG  RG +GGRGRG GR    VQPVA+ATD AAPSRQKSYADVRR+DLEF+VGDKVFLKVAPM+GVLRFERRGKLSPRFVGPF+ILE+IG VAYRL
Subjt:  MPPRRGARRGGRGGRGRGAGRVQPEVQPVAKATDPAAPSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRL

Query:  VLPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        VLPPSLS VHDVFHVSMLRKYVP+PSHVVDY+PLEIDENLSYTEQPVEVLAREVK LR KEIPLVKVLW NH+VEEATWEREDDM++ YPELFEE
Subjt:  VLPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

TrEMBL top hitse value%identityAlignment
A0A1S4DWP6 uncharacterized protein LOC1079908861.5e-8585.64Show/hide
Query:  MPPRRGARRGGRGGRGRGAGRVQPEVQPVAKATDPAAPSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRL
        MP RRG  RG +GGRGRG GR    VQPVA+ATD AAPSRQKSYADVRR+DLEF+VGDKVFLKVAPM+GVLRFERRGKLSPRFVGPF+ILE+IG VAYRL
Subjt:  MPPRRGARRGGRGGRGRGAGRVQPEVQPVAKATDPAAPSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRL

Query:  VLPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        VLPPSLS VHDVFHVSMLRKYVP+PSHVVDY+PLEIDENLSYTEQPVEVLAREVK LR KEIPLVKVLW NH+VEEATWEREDDM++ YPELFEE
Subjt:  VLPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

A0A5A7T156 Pol protein1.6e-8299.37Show/hide
Query:  APSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI
        A SRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI
Subjt:  APSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI

Query:  DENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        DENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  DENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

A0A5A7UFU0 Pol protein4.6e-8298.74Show/hide
Query:  APSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI
        A SRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRL LPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI
Subjt:  APSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI

Query:  DENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        DENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  DENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

A0A5A7ULI8 Pol protein1.0e-8198.11Show/hide
Query:  APSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI
        A SRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRL LPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI
Subjt:  APSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI

Query:  DENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        DENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYP+LFEE
Subjt:  DENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

A0A5A7UYS8 Pol protein1.3e-8198.11Show/hide
Query:  APSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI
        A SRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRL LPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI
Subjt:  APSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEI

Query:  DENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
        DENLSYTEQPVEVL REVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  DENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein4.0e-0639.29Show/hide
Query:  RQKSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTV-HDVFHVSMLRKY
        + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  RQKSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTV-HDVFHVSMLRKY

P0CT35 Transposon Tf2-2 polyprotein4.0e-0639.29Show/hide
Query:  RQKSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTV-HDVFHVSMLRKY
        + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  RQKSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTV-HDVFHVSMLRKY

P0CT36 Transposon Tf2-3 polyprotein4.0e-0639.29Show/hide
Query:  RQKSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTV-HDVFHVSMLRKY
        + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  RQKSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTV-HDVFHVSMLRKY

P0CT41 Transposon Tf2-12 polyprotein4.0e-0639.29Show/hide
Query:  RQKSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTV-HDVFHVSMLRKY
        + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  RQKSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTV-HDVFHVSMLRKY

Q9UR07 Transposon Tf2-11 polyprotein4.0e-0639.29Show/hide
Query:  RQKSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTV-HDVFHVSMLRKY
        + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L KY
Subjt:  RQKSYADVRRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTV-HDVFHVSMLRKY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGCCAAGGAGAGGTGCACGTAGGGGTGGCCGAGGAGGCCGAGGAAGAGGAGCAGGACGCGTTCAGCCTGAGGTGCAGCCTGTAGCCAAAGCCACTGACCCGGCTGC
GCCAAGTAGGCAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGGTAGGGGACAAGGTGTTCTTAAAGGTAGCACCTATGAGAGGTGTCTTACGATTTG
AAAGGAGGGGAAAACTGAGTCCCCGTTTTGTTGGGCCGTTTGAGATTCTGGAGCGGATTGGCCCTGTGGCTTATCGCTTGGTGTTGCCACCATCACTCTCGACAGTTCAC
GATGTGTTTCATGTCTCTATGTTGAGAAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATACTGAACAACCCGT
TGAGGTGCTGGCTAGAGAGGTGAAAACGTTGAGGAATAAAGAAATTCCTTTGGTTAAAGTCTTATGGCGGAATCACCGGGTGGAAGAGGCTACATGGGAGCGAGAAGATG
ACATGAGGTCCCGTTACCCCGAACTGTTCGAGGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCGCCAAGGAGAGGTGCACGTAGGGGTGGCCGAGGAGGCCGAGGAAGAGGAGCAGGACGCGTTCAGCCTGAGGTGCAGCCTGTAGCCAAAGCCACTGACCCGGCTGC
GCCAAGTAGGCAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGGTAGGGGACAAGGTGTTCTTAAAGGTAGCACCTATGAGAGGTGTCTTACGATTTG
AAAGGAGGGGAAAACTGAGTCCCCGTTTTGTTGGGCCGTTTGAGATTCTGGAGCGGATTGGCCCTGTGGCTTATCGCTTGGTGTTGCCACCATCACTCTCGACAGTTCAC
GATGTGTTTCATGTCTCTATGTTGAGAAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATACTGAACAACCCGT
TGAGGTGCTGGCTAGAGAGGTGAAAACGTTGAGGAATAAAGAAATTCCTTTGGTTAAAGTCTTATGGCGGAATCACCGGGTGGAAGAGGCTACATGGGAGCGAGAAGATG
ACATGAGGTCCCGTTACCCCGAACTGTTCGAGGAATAA
Protein sequenceShow/hide protein sequence
MPPRRGARRGGRGGRGRGAGRVQPEVQPVAKATDPAAPSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLVLPPSLSTVH
DVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE