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Pay0013577 (gene) of Melon (Payzawat) v1 genome

Gene IDPay0013577
OrganismCucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionH/ACA ribonucleoprotein complex subunit 1-like
Genome locationchr09:9624175..9625894
RNA-Seq ExpressionPay0013577
SyntenyPay0013577
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066625.1 H/ACA ribonucleoprotein complex subunit 1-like [Cucumis melo var. makuwa]4.1e-83100Show/hide
Query:  MPYFSPLLSNSTRYFASLLRTPPRRASNEVHLYLLCTPLLSVVLHSFVFGLHIVLHIVLHSFVLHIFPPHANLFPFILSQIHIVGFHHHQIYIVGFHHRQ
        MPYFSPLLSNSTRYFASLLRTPPRRASNEVHLYLLCTPLLSVVLHSFVFGLHIVLHIVLHSFVLHIFPPHANLFPFILSQIHIVGFHHHQIYIVGFHHRQ
Subjt:  MPYFSPLLSNSTRYFASLLRTPPRRASNEVHLYLLCTPLLSVVLHSFVFGLHIVLHIVLHSFVLHIFPPHANLFPFILSQIHIVGFHHHQIYIVGFHHRQ

Query:  IHVCLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
        IHVCLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
Subjt:  IHVCLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK

TYK14187.1 H/ACA ribonucleoprotein complex subunit 1-like [Cucumis melo var. makuwa]1.4e-5476.28Show/hide
Query:  MPYFSPLLSNSTRYFASLLRTPPRRASNEVHLYLLCTPLLSVVLHSFVFGLHIVLHIVLHSFVLHIFPPHANLFPFILSQIHIVGFHHHQIYIVGFHHRQ
        MPYFSPLLSNSTRYFASLLRTPPRRASNEVHLYLLCTPLLSVVLHSFVFGLHIVLHIVLHSFVLHI                                  
Subjt:  MPYFSPLLSNSTRYFASLLRTPPRRASNEVHLYLLCTPLLSVVLHSFVFGLHIVLHIVLHSFVLHIFPPHANLFPFILSQIHIVGFHHHQIYIVGFHHRQ

Query:  IHVCLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
           CLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
Subjt:  IHVCLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK

XP_008465771.1 PREDICTED: uncharacterized protein LOC103503371 [Cucumis melo]9.1e-8399.36Show/hide
Query:  MPYFSPLLSNSTRYFASLLRTPPRRASNEVHLYLLCTPLLSVVLHSFVFGLHIVLHIVLHSFVLHIFPPHANLFPFILSQIHIVGFHHHQIYIVGFHHRQ
        MPYFSPLLSNSTRYFASLLRTPPRRASNEVHLYLLCTPLLSVVLHSFVFGLHIVLHIVLHSFVLHIFPPHANLFPFILSQIHIVGFHHHQIYIVGFHHRQ
Subjt:  MPYFSPLLSNSTRYFASLLRTPPRRASNEVHLYLLCTPLLSVVLHSFVFGLHIVLHIVLHSFVLHIFPPHANLFPFILSQIHIVGFHHHQIYIVGFHHRQ

Query:  IHVCLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
        IHVCL+TNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
Subjt:  IHVCLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK

XP_022933028.1 RGG repeats nuclear RNA binding protein A-like isoform X1 [Cucurbita moschata]2.2e-1274.14Show/hide
Query:  LSTNKFLRPAEEERHYTP------RVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
        LS N+FLRPAE ERHYTP      R  GSRGG GGSS+SNV  PSIEDPGQFPTLGAK
Subjt:  LSTNKFLRPAEEERHYTP------RVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK

XP_023520985.1 RGG repeats nuclear RNA binding protein A-like isoform X2 [Cucurbita pepo subsp. pepo]2.2e-1274.14Show/hide
Query:  LSTNKFLRPAEEERHYTP------RVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
        LS N+FLRPAE ERHYTP      R  GSRGG GGSS+SNV  PSIEDPGQFPTLGAK
Subjt:  LSTNKFLRPAEEERHYTP------RVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK

TrEMBL top hitse value%identityAlignment
A0A1S3CR37 uncharacterized protein LOC1035033714.4e-8399.36Show/hide
Query:  MPYFSPLLSNSTRYFASLLRTPPRRASNEVHLYLLCTPLLSVVLHSFVFGLHIVLHIVLHSFVLHIFPPHANLFPFILSQIHIVGFHHHQIYIVGFHHRQ
        MPYFSPLLSNSTRYFASLLRTPPRRASNEVHLYLLCTPLLSVVLHSFVFGLHIVLHIVLHSFVLHIFPPHANLFPFILSQIHIVGFHHHQIYIVGFHHRQ
Subjt:  MPYFSPLLSNSTRYFASLLRTPPRRASNEVHLYLLCTPLLSVVLHSFVFGLHIVLHIVLHSFVLHIFPPHANLFPFILSQIHIVGFHHHQIYIVGFHHRQ

Query:  IHVCLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
        IHVCL+TNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
Subjt:  IHVCLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK

A0A5A7VLJ4 H/ACA ribonucleoprotein complex subunit 1-like2.0e-83100Show/hide
Query:  MPYFSPLLSNSTRYFASLLRTPPRRASNEVHLYLLCTPLLSVVLHSFVFGLHIVLHIVLHSFVLHIFPPHANLFPFILSQIHIVGFHHHQIYIVGFHHRQ
        MPYFSPLLSNSTRYFASLLRTPPRRASNEVHLYLLCTPLLSVVLHSFVFGLHIVLHIVLHSFVLHIFPPHANLFPFILSQIHIVGFHHHQIYIVGFHHRQ
Subjt:  MPYFSPLLSNSTRYFASLLRTPPRRASNEVHLYLLCTPLLSVVLHSFVFGLHIVLHIVLHSFVLHIFPPHANLFPFILSQIHIVGFHHHQIYIVGFHHRQ

Query:  IHVCLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
        IHVCLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
Subjt:  IHVCLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK

A0A5D3CQJ2 H/ACA ribonucleoprotein complex subunit 1-like6.6e-5576.28Show/hide
Query:  MPYFSPLLSNSTRYFASLLRTPPRRASNEVHLYLLCTPLLSVVLHSFVFGLHIVLHIVLHSFVLHIFPPHANLFPFILSQIHIVGFHHHQIYIVGFHHRQ
        MPYFSPLLSNSTRYFASLLRTPPRRASNEVHLYLLCTPLLSVVLHSFVFGLHIVLHIVLHSFVLHI                                  
Subjt:  MPYFSPLLSNSTRYFASLLRTPPRRASNEVHLYLLCTPLLSVVLHSFVFGLHIVLHIVLHSFVLHIFPPHANLFPFILSQIHIVGFHHHQIYIVGFHHRQ

Query:  IHVCLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
           CLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
Subjt:  IHVCLSTNKFLRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK

A0A6J1EYL1 RGG repeats nuclear RNA binding protein A-like isoform X21.1e-1274.14Show/hide
Query:  LSTNKFLRPAEEERHYTP------RVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
        LS N+FLRPAE ERHYTP      R  GSRGG GGSS+SNV  PSIEDPGQFPTLGAK
Subjt:  LSTNKFLRPAEEERHYTP------RVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK

A0A6J1F3H7 RGG repeats nuclear RNA binding protein A-like isoform X11.1e-1274.14Show/hide
Query:  LSTNKFLRPAEEERHYTP------RVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK
        LS N+FLRPAE ERHYTP      R  GSRGG GGSS+SNV  PSIEDPGQFPTLGAK
Subjt:  LSTNKFLRPAEEERHYTP------RVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGTACTTCTCCCCTCTCCTTTCCAACTCCACGCGTTACTTCGCCTCTCTCCTTCGTACTCCACCTCGGCGAGCATCAAACGAAGTCCACCTCTATCTCCTTTGTAC
TCCACTTCTCTCTGTTGTACTCCACTCCTTCGTATTCGGACTCCACATTGTCCTCCACATCGTACTCCACTCCTTCGTACTCCACATCTTTCCTCCTCACGCTAACCTTT
TTCCGTTCATCCTCTCGCAAATTCACATAGTTGGGTTTCACCACCATCAGATTTACATAGTTGGGTTTCACCACCGCCAGATTCACGTGTGTTTGAGTACCAACAAGTTT
TTGAGGCCTGCGGAAGAAGAGCGTCACTACACCCCTAGAGTCTGTGGTTCAAGGGGAGGATGTGGTGGCAGCTCGATGAGCAATGTTCCAACCCCATCCATTGAAGACCC
TGGGCAGTTCCCGACCTTAGGTGCCAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCGTACTTCTCCCCTCTCCTTTCCAACTCCACGCGTTACTTCGCCTCTCTCCTTCGTACTCCACCTCGGCGAGCATCAAACGAAGTCCACCTCTATCTCCTTTGTAC
TCCACTTCTCTCTGTTGTACTCCACTCCTTCGTATTCGGACTCCACATTGTCCTCCACATCGTACTCCACTCCTTCGTACTCCACATCTTTCCTCCTCACGCTAACCTTT
TTCCGTTCATCCTCTCGCAAATTCACATAGTTGGGTTTCACCACCATCAGATTTACATAGTTGGGTTTCACCACCGCCAGATTCACGTGTGTTTGAGTACCAACAAGTTT
TTGAGGCCTGCGGAAGAAGAGCGTCACTACACCCCTAGAGTCTGTGGTTCAAGGGGAGGATGTGGTGGCAGCTCGATGAGCAATGTTCCAACCCCATCCATTGAAGACCC
TGGGCAGTTCCCGACCTTAGGTGCCAAGTAA
Protein sequenceShow/hide protein sequence
MPYFSPLLSNSTRYFASLLRTPPRRASNEVHLYLLCTPLLSVVLHSFVFGLHIVLHIVLHSFVLHIFPPHANLFPFILSQIHIVGFHHHQIYIVGFHHRQIHVCLSTNKF
LRPAEEERHYTPRVCGSRGGCGGSSMSNVPTPSIEDPGQFPTLGAK