CuGenDBv2

Gene ID	Pay0013634
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ribonuclease H
Genome location	chr12:4026230..4027629
RNA-Seq Expression	Pay0013634
Synteny	Pay0013634
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037793.1 uncharacterized protein E6C27_scaffold918G00010 [Cucumis melo var. makuwa]

4.2e-09

100

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Query:  MEMFDSVMLEHVPRIENKRADALANLATALMMPDN
        MEMFDSVMLEHVPRIENKRADALANLATALMMPDN
Subjt:  MEMFDSVMLEHVPRIENKRADALANLATALMMPDN

KAA0037793.1 uncharacterized protein E6C27_scaffold918G00010 [Cucumis melo var. makuwa]

5.2e-44

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Query:  LMMPDNLTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD
        + + + LT EDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPI+TTRHTGNKFTPKWDGPYIVKEVY NGAYKIVD
Subjt:  LMMPDNLTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD

TYK02888.1 uncharacterized protein E5676_scaffold968G00270 [Cucumis melo var. makuwa]

2.8e-45

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Query:  LMMPDNLTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD
        + + + LTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD
Subjt:  LMMPDNLTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD

TYK02888.1 uncharacterized protein E5676_scaffold968G00270 [Cucumis melo var. makuwa]

4.2e-09

100

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Query:  MEMFDSVMLEHVPRIENKRADALANLATALMMPDN
        MEMFDSVMLEHVPRIENKRADALANLATALMMPDN
Subjt:  MEMFDSVMLEHVPRIENKRADALANLATALMMPDN

TYK02888.1 uncharacterized protein E5676_scaffold968G00270 [Cucumis melo var. makuwa]

2.8e-45

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Query:  LMMPDNLTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD
        + + + LTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD
Subjt:  LMMPDNLTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD

XP_031737372.1 uncharacterized protein LOC116402244 [Cucumis sativus]

1.3e-07

81.58

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Query:  MEMFDSVMLEHVPRIENKRADALANLATALMMPDNLTI
        ME FD+VMLEHVPR+ENKRADALANLATAL MPD++T+
Subjt:  MEMFDSVMLEHVPRIENKRADALANLATALMMPDNLTI

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]

1.3e-07

81.58

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Query:  MEMFDSVMLEHVPRIENKRADALANLATALMMPDNLTI
        ME FD+VMLEHVPR+ENKRADALANLATAL MPD++T+
Subjt:  MEMFDSVMLEHVPRIENKRADALANLATALMMPDNLTI

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]

5.2e-44

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Query:  LMMPDNLTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD
        + + + LT EDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPI+TTRHTGNKFTPKWDGPYIVKEVY NGAYKIVD
Subjt:  LMMPDNLTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]

1.3e-07

81.58

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Query:  MEMFDSVMLEHVPRIENKRADALANLATALMMPDNLTI
        ME FD+VMLEHVPR+ENKRADALANLATAL MPD++T+
Subjt:  MEMFDSVMLEHVPRIENKRADALANLATALMMPDNLTI

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]

5.2e-44

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Query:  LMMPDNLTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD
        + + + LT EDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPI+TTRHTGNKFTPKWDGPYIVKEVY NGAYKIVD
Subjt:  LMMPDNLTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T485 Reverse transcriptase

1.3e-45

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Query:  LMMPDNLTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD
        + + + LTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD
Subjt:  LMMPDNLTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD

A0A5A7T485 Reverse transcriptase

2.0e-09

100

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Query:  MEMFDSVMLEHVPRIENKRADALANLATALMMPDN
        MEMFDSVMLEHVPRIENKRADALANLATALMMPDN
Subjt:  MEMFDSVMLEHVPRIENKRADALANLATALMMPDN

A0A5A7T485 Reverse transcriptase

1.3e-45

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Query:  LMMPDNLTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD
        + + + LTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD
Subjt:  LMMPDNLTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD

A0A5A7T7W6 Uncharacterized protein

4.3e-44

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Query:  LMMPDNLTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD
        +++ + LT EDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVL VRRPI+TTRHTGNKFTPKWDGPYIVKEVY NGAYKIVD
Subjt:  LMMPDNLTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD

A0A5A7U8J5 Ribonuclease H

4.3e-44

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Query:  LMMPDNLTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD
        + + + LTIE NVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPI+TTRHTGNKFTPKWDGPYIVKEVY NGAYKIVD
Subjt:  LMMPDNLTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD

A0A5A7U8J5 Ribonuclease H

1.7e-08

86.84

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Query:  MEMFDSVMLEHVPRIENKRADALANLATALMMPDNLTI
        ME FDSVMLEHVPR ENKRADALANLATALMMPDN+ +
Subjt:  MEMFDSVMLEHVPRIENKRADALANLATALMMPDNLTI

A0A5D3BV77 Reverse transcriptase

2.0e-09

100

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Query:  MEMFDSVMLEHVPRIENKRADALANLATALMMPDN
        MEMFDSVMLEHVPRIENKRADALANLATALMMPDN
Subjt:  MEMFDSVMLEHVPRIENKRADALANLATALMMPDN

A0A5D3BV77 Reverse transcriptase

2.5e-44

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Query:  LMMPDNLTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD
        + + + LT EDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPI+TTRHTGNKFTPKWDGPYIVKEVY NGAYKIVD
Subjt:  LMMPDNLTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNKFTPKWDGPYIVKEVYINGAYKIVD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGAAATGTTTGACAGTGTGATGCTGGAGCATGTCCCTAGAATAGAAAACAAAAGAGCAGACGCATTGGCAAATTTAGCCACTGCCTTGATGATGCCGGATAAC
TTGACTATTGAAGACAATGTCAAGTTACGTCTTCAAGAGTTAGAAGCACTTGATGAAAAGCGATTAGAAGCTCAGCAAGCATTGGAATGTTACCAAGCGCGAATG
TCTAAAGCTTTTGACAAACATGTAAAGCCTCGATCATTTCAAGTTGGTGATTTGGTGCTTGCAGTAAGAAGACCTATCGTCACGACAAGGCATACAGGGAATAAG
TTTACACCTAAATGGGACGGACCCTATATTGTCAAAGAAGTTTACATAAATGGCGCGTACAAGATTGTTGATTGA

mRNA sequence

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Protein sequence

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MEMFDSVMLEHVPRIENKRADALANLATALMMPDNLTIEDNVKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIVTTRHTGNK
FTPKWDGPYIVKEVYINGAYKIVD

Pay0013634 (gene) of Melon (Payzawat) v1 genome