CuGenDBv2

Gene ID	Pay0013867
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	protochlorophyllide-dependent translocon component 52, chloroplastic-like
Genome location	chr06:13457820..13463559
RNA-Seq Expression	Pay0013867
Synteny	Pay0013867
Gene Ontology terms	GO:0009507 - chloroplast (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0031967 - organelle envelope (cellular component) GO:0010277 - chlorophyllide a oxygenase [overall] activity (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0051537 - 2 iron, 2 sulfur cluster binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0055707.1 protochlorophyllide-dependent translocon component 52 [Cucumis melo var. makuwa]

4.1e-27

95.24

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Query:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILLPSPLKEQLMDR
        ERKILDV PSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGIL PSP KEQLMDR
Subjt:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILLPSPLKEQLMDR

TYK09956.1 protochlorophyllide-dependent translocon component 52 [Cucumis melo var. makuwa]

2.0e-26

93.65

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Query:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILLPSPLKEQLMDR
        ERKI DV PSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGIL PSP KEQLMDR
Subjt:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILLPSPLKEQLMDR

XP_008451029.1 PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like [Cucumis melo]

1.2e-26

93.65

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Query:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILLPSPLKEQLMDR
        ERKILDV PSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGI  PSP KEQLMDR
Subjt:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILLPSPLKEQLMDR

XP_022933573.1 protochlorophyllide-dependent translocon component 52, chloroplastic [Cucurbita moschata]

1.3e-25

90.48

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Query:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILLPSPLKEQLMDR
        ERKILDV PSNWQKACFVPTKSDAKVVAFRRWLN+YSDG VDWRGKF+GIL PSP KEQLMDR
Subjt:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILLPSPLKEQLMDR

XP_038879674.1 protochlorophyllide-dependent translocon component 52, chloroplastic-like [Benincasa hispida]

3.4e-26

92.06

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Query:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILLPSPLKEQLMDR
        ERKILDV PSNWQKACFVPTKSDAKVVAFRRWLN+YSDGQVDWRGKF+GIL PSP KEQLMDR
Subjt:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILLPSPLKEQLMDR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BQM5 protochlorophyllide-dependent translocon component 52, chloroplastic-like

5.7e-27

93.65

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Query:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILLPSPLKEQLMDR
        ERKILDV PSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGI  PSP KEQLMDR
Subjt:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILLPSPLKEQLMDR

A0A5A7UM92 Protochlorophyllide-dependent translocon component 52

2.0e-27

95.24

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Query:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILLPSPLKEQLMDR
        ERKILDV PSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGIL PSP KEQLMDR
Subjt:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILLPSPLKEQLMDR

A0A5D3CHU0 Protochlorophyllide-dependent translocon component 52

9.7e-27

93.65

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Query:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILLPSPLKEQLMDR
        ERKI DV PSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGIL PSP KEQLMDR
Subjt:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILLPSPLKEQLMDR

A0A6J1F557 protochlorophyllide-dependent translocon component 52, chloroplastic

6.3e-26

90.48

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Query:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILLPSPLKEQLMDR
        ERKILDV PSNWQKACFVPTKSDAKVVAFRRWLN+YSDG VDWRGKF+GIL PSP KEQLMDR
Subjt:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILLPSPLKEQLMDR

A0A6J1HR92 protochlorophyllide-dependent translocon component 52, chloroplastic

6.3e-26

90.48

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Query:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILLPSPLKEQLMDR
        ERKILDV PSNWQKACFVPTKSDAKVVAFRRWLN+YSDG VDWRGKF+GIL PSP KEQLMDR
Subjt:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILLPSPLKEQLMDR

SwissProt top hits

e value

%identity

Alignment

Q0DV66 Pheophorbide a oxygenase, chloroplastic

1.7e-07

28.16

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Query:  TNPGDPSLQAFFV-------KLFLKVEIQDFGFRTKLV-LDFFLIPPQKKLGTKTKKIHC------QF-VPS---WKILLRLYTRYINNRL---SGLELQ
        +N G+P + A FV       K+ +  ++  FG +  ++ +  F IP       KT+ I C      QF +P    W+++ R Y  + +N +     + LQ
Subjt:  TNPGDPSLQAFFV-------KLFLKVEIQDFGFRTKLV-LDFFLIPPQKKLGTKTKKIHC------QF-VPS---WKILLRLYTRYINNRL---SGLELQ

Query:  GLERKILDVDPSN-------WQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILLPSPL--KEQLMDR
        G E+  L     +       + K  F PT++D  V+AFR WL ++ + Q DW G  +  +LPS +  K +++DR
Subjt:  GLERKILDVDPSN-------WQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILLPSPL--KEQLMDR

Q8W496 Protochlorophyllide-dependent translocon component 52, chloroplastic

7.7e-21

68.75

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Query:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILL-PSPLKEQLMDR
        ERKIL+  P NWQKACF+PTKSDA VV FRRW N+YS+ +VDWRGKF+  LL P+P +EQL DR
Subjt:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILL-PSPLKEQLMDR

Arabidopsis top hits

e value

%identity

Alignment

AT4G25650.1 ACD1-like

5.5e-22

68.75

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Query:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILL-PSPLKEQLMDR
        ERKIL+  P NWQKACF+PTKSDA VV FRRW N+YS+ +VDWRGKF+  LL P+P +EQL DR
Subjt:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILL-PSPLKEQLMDR

AT4G25650.2 ACD1-like

5.5e-22

68.75

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Query:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILL-PSPLKEQLMDR
        ERKIL+  P NWQKACF+PTKSDA VV FRRW N+YS+ +VDWRGKF+  LL P+P +EQL DR
Subjt:  ERKILDVDPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILL-PSPLKEQLMDR

Sequences

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CDS sequence

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ATGGATGATAACGCAAGTTCAAACATCACAAACCCTGGAGACCCGAGCTTGCAAGCCTTTTTCGTGAAACTCTTCTTGAAGGTTGAGATTCAAGATTTTGGATTT
AGAACCAAATTGGTTCTCGACTTTTTCCTCATCCCACCACAGAAGAAATTAGGAACCAAAACGAAGAAAATCCATTGTCAATTTGTTCCAAGTTGGAAAATCTTA
CTGAGACTGTACACCCGCTACATAAACAACAGGCTGAGTGGCCTGGAGTTGCAAGGACTTGAGAGGAAGATATTGGATGTCGACCCTTCAAATTGGCAGAAAGCT
TGTTTTGTGCCAACCAAGTCAGATGCTAAAGTAGTTGCCTTCAGAAGGTGGTTGAACAGATATTCTGATGGTCAAGTTGATTGGAGAGGCAAGTTCAATGGCATT
CTTCTTCCATCGCCTCTCAAGGAACAGCTAATGGATAGGTAA

mRNA sequence

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Protein sequence

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MDDNASSNITNPGDPSLQAFFVKLFLKVEIQDFGFRTKLVLDFFLIPPQKKLGTKTKKIHCQFVPSWKILLRLYTRYINNRLSGLELQGLERKILDVDPSNWQKA
CFVPTKSDAKVVAFRRWLNRYSDGQVDWRGKFNGILLPSPLKEQLMDR

Pay0013867 (gene) of Melon (Payzawat) v1 genome