CuGenDBv2

Gene ID	Pay0013876
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	U2 small nuclear ribonucleoprotein A'
Genome location	chr11:31669035..31674472
RNA-Seq Expression	Pay0013876
Synteny	Pay0013876
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0005737 - cytoplasm (cellular component) GO:0015030 - Cajal body (cellular component) GO:0005515 - protein binding (molecular function) GO:0030620 - U2 snRNA binding (molecular function)
InterPro domains	IPR001611 - Leucine-rich repeat IPR003603 - U2A'/phosphoprotein 32 family A, C-terminal IPR032675 - Leucine-rich repeat domain superfamily IPR044640 - U2 small nuclear ribonucleoprotein A'

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004140564.3 U2 small nuclear ribonucleoprotein A' [Cucumis sativus]

5.8e-141

98.57

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV GEVEKASKPVEEKQTPNVS
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTA NITKDKDDKT S SGDEEHVTNDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE

XP_008459932.1 PREDICTED: U2 small nuclear ribonucleoprotein A' [Cucumis melo]

5.7e-144

100

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE

XP_022960458.1 U2 small nuclear ribonucleoprotein A' [Cucurbita moschata]

7.2e-131

91.26

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV GEVE ASKPVEEKQT  +S
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHV-------TNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD DDKT S  GDEE+V       +NDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHV-------TNDESTPMEQE

XP_023005060.1 U2 small nuclear ribonucleoprotein A' [Cucurbita maxima]

5.5e-131

91.26

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV GEVE ASKPVEEKQT  +S
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHV-------TNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD DDKT S  GDEE+V       +NDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHV-------TNDESTPMEQE

XP_038907085.1 U2 small nuclear ribonucleoprotein A' [Benincasa hispida]

7.2e-131

91.61

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVK FV GEVE ASKPVEEKQT NVS
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHV-------TNDESTPMEQE
        APT EQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLL+DNT PN TK+ DDKT S SGDEE+V       +NDE TPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHV-------TNDESTPMEQE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CAU7 U2 small nuclear ribonucleoprotein A'

2.7e-144

100

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE

A0A6J1D6P1 U2 small nuclear ribonucleoprotein A'

3.6e-128

89.82

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEAR+LFSSKEVEEEAK ESVKTFV GEVE ASKP EEKQT NVS
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHVT-------NDESTPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD DD+T S   DE++V+       NDES PMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHVT-------NDESTPMEQ

A0A6J1H905 U2 small nuclear ribonucleoprotein A'

3.5e-131

91.26

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV GEVE ASKPVEEKQT  +S
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHV-------TNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD DDKT S  GDEE+V       +NDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHV-------TNDESTPMEQE

A0A6J1KWC8 U2 small nuclear ribonucleoprotein A'

2.7e-131

91.26

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV GEVE ASKPVEEKQT  +S
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHV-------TNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD DDKT S  GDEE+V       +NDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHV-------TNDESTPMEQE

E5GB46 U2 small nuclear ribonucleoprotein a

2.7e-144

100

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS
        VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE

SwissProt top hits

e value

%identity

Alignment

P09661 U2 small nuclear ribonucleoprotein A'

1.6e-53

53.36

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVSGEVEKASKPVEEKQTPN
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KTF  G    A  P ++K+   
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVSGEVEKASKPVEEKQTPN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
           P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

P43333 U2 small nuclear ribonucleoprotein A'

4.1e-97

79.92

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN PYLNRLGTLLINNNRITRINPN+GEFLP LH+LVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS
        VNLVEIDPLAS+ KLQ+LSLLDNNITKK NYRLYVIHKLKS+RVLDF K++ KER EA +LFSSKE EEE KK S +     EV+K S+  E  +TP V 
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL
        APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL

P57784 U2 small nuclear ribonucleoprotein A'

3.1e-52

49.81

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVSGEVEKASKPVEEKQTPN
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KTF  G    A  P ++K+   
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVSGEVEKASKPVEEKQTPN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKD---KDDKTTSGS
           P+   + AIK AI N+ TL EV RL+  L+SGQ+P      E  + P+   +   +DD  T+GS
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTAPNITKD---KDDKTTSGS

Q4R8Y8 U2 small nuclear ribonucleoprotein A'

1.6e-53

53.36

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVSGEVEKASKPVEEKQTPN
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KTF  G    A  P ++K+   
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVSGEVEKASKPVEEKQTPN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
           P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

Q9BLB6 Probable U2 small nuclear ribonucleoprotein A'

3.7e-45

45.8

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MVRLT +L  + P F N++  RE++LRG KI VIEN+G T DQFD IDL+DN+I KL+N P  +RL TL ++NNRI  I P+I   LPNL TL LTNN +
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEE--EAKKESVKTFVSGEVEKASKPVEEKQTPN
          L +I+PLA   KL++++ + N IT K NYR+Y+I+KL +VRV+DF +VR  ER  A+ +F  K  ++  +A ++SV T    E+E       E  +  
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEE--EAKKESVKTFVSGEVEKASKPVEEKQTPN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
         +  T E    IK AI N+++L EV  L+  L SG++P
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

Arabidopsis top hits

e value

%identity

Alignment

AT1G09760.1 U2 small nuclear ribonucleoprotein A

2.9e-98

79.92

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL
        MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN PYLNRLGTLLINNNRITRINPN+GEFLP LH+LVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRL

Query:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS
        VNLVEIDPLAS+ KLQ+LSLLDNNITKK NYRLYVIHKLKS+RVLDF K++ KER EA +LFSSKE EEE KK S +     EV+K S+  E  +TP V 
Subjt:  VNLVEIDPLASLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL
        APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL

Sequences

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CDS sequence

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ATGGTGAGACTGACGGTCGATTTAATCTGGAAAAGTCCTCATTTCTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTAACAAGATAGCGGTGATAGAAAACCT
AGGTGCCACCGAGGATCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCCTATCTTAATCGATTGGGCACATTGCTGATCAATAATA
ATAGAATCACTCGTATCAATCCAAATATTGGAGAGTTCTTGCCAAATTTACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTAGTAGAGATTGACCCGCTGGCA
TCCCTTTCGAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACGAAGAAGCCAAATTATCGATTGTATGTCATTCACAAGTTGAAGTCGGTCCGCGTGCTTGATTT
CAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAAGCAAAGAAGGAATCTGTGAAGACATTCGTTTCAGGTGAGG
TAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCGCCAACACCGGAGCAAATTATAGCTATAAAGGCGGCCATTGTTAATTCCCAAACCCTT
GAAGAGGTTGCAAGATTAGAACAGGCGCTTAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGATAATACCGCACCAAACATCACAAAAGATAAAGATGATAA
GACAACGTCTGGTAGCGGAGATGAAGAACATGTAACGAATGATGAATCTACACCTATGGAGCAGGAATAA

mRNA sequence

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GGGAAAGTCCATTAATGGATCCACGCACCGGTCTTTTGGTGTCGTTCCTCGTCGATGCCTTCCCTTCCCTTCTCTTCCTCCTAAAGCCCTAAACCCCATCGTCGTCGTTC
TGGTCGTCGTCGAAGAAGAAGAAGAAGAAGAAGATGGTGAGACTGACGGTCGATTTAATCTGGAAAAGTCCTCATTTCTTCAATGCCATTAAAGAGCGAGAACTGGACCT
TCGAGGTAACAAGATAGCGGTGATAGAAAACCTAGGTGCCACCGAGGATCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCCTATC
TTAATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCGTATCAATCCAAATATTGGAGAGTTCTTGCCAAATTTACATACACTAGTTCTTACAAACAACAGA
CTTGTGAACTTAGTAGAGATTGACCCGCTGGCATCCCTTTCGAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACGAAGAAGCCAAATTATCGATTGTATGTCAT
TCACAAGTTGAAGTCGGTCCGCGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAAGCAAAGA
AGGAATCTGTGAAGACATTCGTTTCAGGTGAGGTAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCGCCAACACCGGAGCAAATTATAGCT
ATAAAGGCGGCCATTGTTAATTCCCAAACCCTTGAAGAGGTTGCAAGATTAGAACAGGCGCTTAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGATAATAC
CGCACCAAACATCACAAAAGATAAAGATGATAAGACAACGTCTGGTAGCGGAGATGAAGAACATGTAACGAATGATGAATCTACACCTATGGAGCAGGAATAATAGTAGA
AAATTATTGCTGTGACTACTGTGGTGGCTCATCTATAAGTATTCATCAATGGCGATCCTGTCGTGCTGATTTGTGGACATTTTTTAAAAAACCATTTGAGAAGTCTAAGC
ATGGCACTTCCCAGCCAGGGGAATGTTAGGCGGATCTTTTGCCTCTCTTTGTAAGAGTTGGGCTCTCTTTTCTTTTCCCTTTATTTCATTTTTCCTTTTTTTTTTCTTTG
GGTAAAGAATATTCTAAAAATATGTACGGAGTTTTTGTTTTTGCTGTATTTACAACACTTTGATGGCTTTTGAAATTTCCTTACTTTAAAATATATGTACGATTATTTAG
CTTAGTGCAGAGTTTGCCTCTCTTTTTTGTTCCTTTTATCTTCGAACACTGAAAGTCAGAAAAAAGGAAAAGAAAAGAAAAAGGAACAATTGGTTTTGTACATTTCAAAA
AATAGACGTATCGTATCTCTCTTTCCCATCACAATAACTTATTTTTTCTCTAGAAAAAAACATGATTTTCATAATGCAAAATAGGTGTAAATTTATGGATAAAAAATGTT
CTCAATATAGTTTCGATATTTGTTAAAATAGCAAAAAAAAATTATAATAATAAAATCTACGTTACTTTAATTTTTAAATTATAAAAGTAGCAAATTCGAAAATGGTTGTT
TCATACTCATATAATATCATTCATTAATTACTTATCATATTTACCATATCTATACTATGCGATACAATTTTCCAATTTAAAATGTATTGATCTGATAATTGAACTTCTAA
ATTTGCATACCATCAAAATTACGTCTTAATTTTTTGTTATTTTATGTCAAAAACATCAAATCTTAATTATTTTGTCAATTTATTTATGAAAAAAATCTAACTAAA

Protein sequence

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MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLA
SLSKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVSGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTL
EEVARLEQALKSGQLPADLNLLEDNTAPNITKDKDDKTTSGSGDEEHVTNDESTPMEQE

Pay0013876 (gene) of Melon (Payzawat) v1 genome