CuGenDBv2

Gene ID	Pay0014044
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Coatomer, beta' subunit
Genome location	chr03:26237567..26239424
RNA-Seq Expression	Pay0014044
Synteny	Pay0014044
Gene Ontology terms	GO:0006886 - intracellular protein transport (biological process) GO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process) GO:0006890 - retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (biological process) GO:0006891 - intra-Golgi vesicle-mediated transport (biological process) GO:0000139 - Golgi membrane (cellular component) GO:0030126 - COPI vesicle coat (cellular component) GO:0005198 - structural molecule activity (molecular function)
InterPro domains	IPR006692 - Coatomer, WD associated region

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004149846.1 coatomer subunit beta'-2 isoform X1 [Cucumis sativus]

1.3e-46

98.04

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALM RSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

XP_008447490.1 PREDICTED: coatomer subunit beta'-2-like isoform X1 [Cucumis melo]

1.3e-46

98.04

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALM RSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

XP_008447491.1 PREDICTED: coatomer subunit beta'-2-like isoform X2 [Cucumis melo]

1.3e-46

98.04

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALM RSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

XP_011651524.1 coatomer subunit beta'-2 isoform X2 [Cucumis sativus]

1.3e-46

98.04

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALM RSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

XP_016899939.1 PREDICTED: coatomer subunit beta'-2-like [Cucumis melo]

7.6e-55

100

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL

Query:  SKEDLNEQATILSW
        SKEDLNEQATILSW
Subjt:  SKEDLNEQATILSW

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L8I6 Coatomer subunit beta'

6.3e-47

98.04

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALM RSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

A0A1S3BGZ7 Coatomer subunit beta'

6.3e-47

98.04

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALM RSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

A0A1S3BIG1 Coatomer subunit beta'

6.3e-47

98.04

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALM RSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

A0A1S4DVC7 coatomer subunit beta'-2-like

3.7e-55

100

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL

Query:  SKEDLNEQATILSW
        SKEDLNEQATILSW
Subjt:  SKEDLNEQATILSW

A0A5A7UAX5 Coatomer subunit beta'-2-like isoform X1

6.3e-47

98.04

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL
        MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALM RSYLPSKVSEIVAIWRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

SwissProt top hits

e value

%identity

Alignment

Q5VQ78 Coatomer subunit beta'-1

2.9e-41

83.33

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL
        MS GKLDMAEECL  A D SGLLLLYSSLGDA+GI +LA+ AKE GKNNVAFLCLF+LGKLEDC+QLL++SNRIPEAALM RSYLPSKVSEIVAIWR DL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

Q6H8D5 Coatomer subunit beta'-2

2.5e-40

78.43

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL
        MS GKLDMAEECL +A+D SGLLLLYSSLGDA+G+++L ++AKEQGKNNVAFLC F+LGKLE+CLQLL+ESNRIPEAALM RSYLPSKV EIV +W+KDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL

Query:  SK
         K
Subjt:  SK

Q8L828 Coatomer subunit beta'-3

4.1e-43

84.31

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL
        MS GKL +AE+C+KYA+D SGLLLLYSSLGDA+G+S+LA LAKEQGKNNVAFLCLF LG+LEDCLQLLVESNRIPEAALM RSYLPSKVSEIVA+WR+DL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

Q9C827 Coatomer subunit beta'-2

4.4e-45

88.24

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL
        MS GKL MAEEC+KYA+D SGLLLLYSSLGDA+G+++LATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALM RSYLPSKVSEIVA+WRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

Q9CAA0 Coatomer subunit beta'-1

2.9e-41

81.37

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL
        MS GKLDMAEEC+++A+D SGLLLLYSSLGDA G+ +LA LAKEQGKNNVAFLCLF+LG++EDCL LLVESNRIPEAALM RSYLPSKVSEIVA+WR DL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL

Query:  SK
        +K
Subjt:  SK

Arabidopsis top hits

e value

%identity

Alignment

AT1G52360.1 Coatomer, beta' subunit

3.1e-46

88.24

Show/hide

Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL
        MS GKL MAEEC+KYA+D SGLLLLYSSLGDA+G+++LATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALM RSYLPSKVSEIVA+WRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

AT1G52360.2 Coatomer, beta' subunit

3.1e-46

88.24

Show/hide

Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL
        MS GKL MAEEC+KYA+D SGLLLLYSSLGDA+G+++LATLAKEQGKNNVAFLCLF+LGKLEDCLQLLVESNRIPEAALM RSYLPSKVSEIVA+WRKDL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

AT3G15980.1 Coatomer, beta' subunit

2.9e-44

84.31

Show/hide

Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL
        MS GKL +AE+C+KYA+D SGLLLLYSSLGDA+G+S+LA LAKEQGKNNVAFLCLF LG+LEDCLQLLVESNRIPEAALM RSYLPSKVSEIVA+WR+DL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

AT3G15980.2 Coatomer, beta' subunit

2.9e-44

84.31

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Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL
        MS GKL +AE+C+KYA+D SGLLLLYSSLGDA+G+S+LA LAKEQGKNNVAFLCLF LG+LEDCLQLLVESNRIPEAALM RSYLPSKVSEIVA+WR+DL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

AT3G15980.3 Coatomer, beta' subunit

2.9e-44

84.31

Show/hide

Query:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL
        MS GKL +AE+C+KYA+D SGLLLLYSSLGDA+G+S+LA LAKEQGKNNVAFLCLF LG+LEDCLQLLVESNRIPEAALM RSYLPSKVSEIVA+WR+DL
Subjt:  MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDL

Query:  SK
        SK
Subjt:  SK

Sequences

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CDS sequence

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ATGTCGATTGGAAAGTTGGACATGGCCGAGGAATGTTTGAAGTATGCTGTAGATTATAGTGGTTTGTTATTGTTGTACTCTTCCCTAGGAGACGCTCAAGGCATATCACA
ACTTGCAACCCTTGCCAAGGAGCAAGGAAAGAACAACGTTGCATTCCTTTGTTTATTTGTGTTGGGTAAATTGGAAGACTGCCTTCAGTTGTTAGTAGAAAGTAATCGGA
TTCCAGAAGCTGCTTTGATGGTTCGATCTTATCTTCCAAGCAAGGTATCAGAGATAGTTGCAATTTGGAGGAAAGACCTGAGTAAGGAAGACTTGAATGAACAAGCTACA
ATATTATCTTGGTAA

mRNA sequence

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Protein sequence

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MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSKEDLNEQAT
ILSW

Pay0014044 (gene) of Melon (Payzawat) v1 genome