CuGenDBv2

Gene ID	Pay0014162
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Gag/pol protein
Genome location	chr08:18769453..18769914
RNA-Seq Expression	Pay0014162
Synteny	Pay0014162
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0041268.1 gag/pol protein [Cucumis melo var. makuwa]

3.5e-79

100

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Query:  MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPKTPASNANQASRKAYNRWIKANEKARVYILASISDVLGKKHESLATAKEIMDSLKG
        MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPKTPASNANQASRKAYNRWIKANEKARVYILASISDVLGKKHESLATAKEIMDSLKG
Subjt:  MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPKTPASNANQASRKAYNRWIKANEKARVYILASISDVLGKKHESLATAKEIMDSLKG

Query:  MFGQLEWSLRQEAIKYIYTKRMKEETFIREHILDIMMHFNIAEVNGGAIDEAN
        MFGQLEWSLRQEAIKYIYTKRMKEETFIREHILDIMMHFNIAEVNGGAIDEAN
Subjt:  MFGQLEWSLRQEAIKYIYTKRMKEETFIREHILDIMMHFNIAEVNGGAIDEAN

KAA0041460.1 gag/pol protein [Cucumis melo var. makuwa]

7.3e-69

87.58

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Query:  MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPKTPASNANQASRKAYNRWIKANEKARVYILASISDVLGKKHESLATAKEIMDSLKG
        MNSSIVQLL+ EKLNGDNYAAWKSNLNTILVVDDLRFVLTEECP+TP SNAN+ SRKAY+RWIKANEKARVYILAS+SDVL KKHESLATAKEIM+SLKG
Subjt:  MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPKTPASNANQASRKAYNRWIKANEKARVYILASISDVLGKKHESLATAKEIMDSLKG

Query:  MFGQLEWSLRQEAIKYIYTKRMKEETFIREHILDIMMHFNIAEVNGGAIDEAN
        MFGQ +WSLR EAIKYIYTKRMKE T IREH+LD+M+HFNI EVNGGAIDEAN
Subjt:  MFGQLEWSLRQEAIKYIYTKRMKEETFIREHILDIMMHFNIAEVNGGAIDEAN

KAA0054281.1 gag/pol protein [Cucumis melo var. makuwa]

1.5e-69

88.16

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Query:  MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPKTPASNANQASRKAYNRWIKANEKARVYILASISDVLGKKHESLATAKEIMDSLKG
        MNSSIVQLLAFEKLNGDNYAAWKSNLNT L+VDDLRFVLTEECP+TPASNAN+ SRKAY+RWIKANEKA VYI AS+SDVL K+HESLAT KEIMDSLKG
Subjt:  MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPKTPASNANQASRKAYNRWIKANEKARVYILASISDVLGKKHESLATAKEIMDSLKG

Query:  MFGQLEWSLRQEAIKYIYTKRMKEETFIREHILDIMMHFNIAEVNGGAIDEA
        MFGQ EWSLR EAIKYIYTKRMKEET +REH+LD+MMHFNIAEVNGGAIDEA
Subjt:  MFGQLEWSLRQEAIKYIYTKRMKEETFIREHILDIMMHFNIAEVNGGAIDEA

KAA0056341.1 gag/pol protein [Cucumis melo var. makuwa]

2.5e-69

88.24

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Query:  MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPKTPASNANQASRKAYNRWIKANEKARVYILASISDVLGKKHESLATAKEIMDSLKG
        +NS IVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRF+LTEECP+ PASN NQASRKAY+RWIKANEKARVYILAS+SDVL KKHESLATAKEIMDSLKG
Subjt:  MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPKTPASNANQASRKAYNRWIKANEKARVYILASISDVLGKKHESLATAKEIMDSLKG

Query:  MFGQLEWSLRQEAIKYIYTKRMKEETFIREHILDIMMHFNIAEVNGGAIDEAN
        MF Q EW LR EAIKYIYTKRMKE T +REH+LD+MMHFNIAEVNGGAIDEAN
Subjt:  MFGQLEWSLRQEAIKYIYTKRMKEETFIREHILDIMMHFNIAEVNGGAIDEAN

TYK03174.1 gag/pol protein [Cucumis melo var. makuwa]

2.5e-69

88.24

Show/hide

Query:  MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPKTPASNANQASRKAYNRWIKANEKARVYILASISDVLGKKHESLATAKEIMDSLKG
        +NS IVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRF+LTEECP+ PASN NQASRKAY+RWIKANEKARVYILAS+SDVL KKHESLATAKEIMDSLKG
Subjt:  MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPKTPASNANQASRKAYNRWIKANEKARVYILASISDVLGKKHESLATAKEIMDSLKG

Query:  MFGQLEWSLRQEAIKYIYTKRMKEETFIREHILDIMMHFNIAEVNGGAIDEAN
        MF Q EW LR EAIKYIYTKRMKE T +REH+LD+MMHFNIAEVNGGAIDEAN
Subjt:  MFGQLEWSLRQEAIKYIYTKRMKEETFIREHILDIMMHFNIAEVNGGAIDEAN

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TE93 Gag/pol protein

1.7e-79

100

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Query:  MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPKTPASNANQASRKAYNRWIKANEKARVYILASISDVLGKKHESLATAKEIMDSLKG
        MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPKTPASNANQASRKAYNRWIKANEKARVYILASISDVLGKKHESLATAKEIMDSLKG
Subjt:  MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPKTPASNANQASRKAYNRWIKANEKARVYILASISDVLGKKHESLATAKEIMDSLKG

Query:  MFGQLEWSLRQEAIKYIYTKRMKEETFIREHILDIMMHFNIAEVNGGAIDEAN
        MFGQLEWSLRQEAIKYIYTKRMKEETFIREHILDIMMHFNIAEVNGGAIDEAN
Subjt:  MFGQLEWSLRQEAIKYIYTKRMKEETFIREHILDIMMHFNIAEVNGGAIDEAN

A0A5A7UL66 Gag/pol protein

7.1e-70

88.16

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Query:  MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPKTPASNANQASRKAYNRWIKANEKARVYILASISDVLGKKHESLATAKEIMDSLKG
        MNSSIVQLLAFEKLNGDNYAAWKSNLNT L+VDDLRFVLTEECP+TPASNAN+ SRKAY+RWIKANEKA VYI AS+SDVL K+HESLAT KEIMDSLKG
Subjt:  MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPKTPASNANQASRKAYNRWIKANEKARVYILASISDVLGKKHESLATAKEIMDSLKG

Query:  MFGQLEWSLRQEAIKYIYTKRMKEETFIREHILDIMMHFNIAEVNGGAIDEA
        MFGQ EWSLR EAIKYIYTKRMKEET +REH+LD+MMHFNIAEVNGGAIDEA
Subjt:  MFGQLEWSLRQEAIKYIYTKRMKEETFIREHILDIMMHFNIAEVNGGAIDEA

A0A5A7US12 Gag/pol protein

1.2e-69

88.24

Show/hide

Query:  MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPKTPASNANQASRKAYNRWIKANEKARVYILASISDVLGKKHESLATAKEIMDSLKG
        +NS IVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRF+LTEECP+ PASN NQASRKAY+RWIKANEKARVYILAS+SDVL KKHESLATAKEIMDSLKG
Subjt:  MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPKTPASNANQASRKAYNRWIKANEKARVYILASISDVLGKKHESLATAKEIMDSLKG

Query:  MFGQLEWSLRQEAIKYIYTKRMKEETFIREHILDIMMHFNIAEVNGGAIDEAN
        MF Q EW LR EAIKYIYTKRMKE T +REH+LD+MMHFNIAEVNGGAIDEAN
Subjt:  MFGQLEWSLRQEAIKYIYTKRMKEETFIREHILDIMMHFNIAEVNGGAIDEAN

A0A5D3BVG4 Gag/pol protein

1.2e-69

88.24

Show/hide

Query:  MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPKTPASNANQASRKAYNRWIKANEKARVYILASISDVLGKKHESLATAKEIMDSLKG
        +NS IVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRF+LTEECP+ PASN NQASRKAY+RWIKANEKARVYILAS+SDVL KKHESLATAKEIMDSLKG
Subjt:  MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPKTPASNANQASRKAYNRWIKANEKARVYILASISDVLGKKHESLATAKEIMDSLKG

Query:  MFGQLEWSLRQEAIKYIYTKRMKEETFIREHILDIMMHFNIAEVNGGAIDEAN
        MF Q EW LR EAIKYIYTKRMKE T +REH+LD+MMHFNIAEVNGGAIDEAN
Subjt:  MFGQLEWSLRQEAIKYIYTKRMKEETFIREHILDIMMHFNIAEVNGGAIDEAN

A0A5D3DL59 Gag/pol protein

3.5e-69

87.58

Show/hide

Query:  MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPKTPASNANQASRKAYNRWIKANEKARVYILASISDVLGKKHESLATAKEIMDSLKG
        MNSSIVQLL+ EKLNGDNYAAWKSNLNTILVVDDLRFVLTEECP+TP SNAN+ SRKAY+RWIKANEKARVYILAS+SDVL KKHESLATAKEIM+SLKG
Subjt:  MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPKTPASNANQASRKAYNRWIKANEKARVYILASISDVLGKKHESLATAKEIMDSLKG

Query:  MFGQLEWSLRQEAIKYIYTKRMKEETFIREHILDIMMHFNIAEVNGGAIDEAN
        MFGQ +WSLR EAIKYIYTKRMKE T IREH+LD+M+HFNI EVNGGAIDEAN
Subjt:  MFGQLEWSLRQEAIKYIYTKRMKEETFIREHILDIMMHFNIAEVNGGAIDEAN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAATAGCTCGATAGTTCAATTATTAGCTTTCGAAAAACTTAATGGCGATAACTATGCGGCATGGAAATCAAATCTTAACACAATACTAGTGGTCGATGATTTAAGATT
CGTCTTAACTGAGGAATGTCCTAAAACCCCTGCCTCAAATGCAAACCAAGCTAGTCGGAAAGCATATAATCGATGGATAAAAGCAAATGAGAAAGCTCGTGTCTACATCC
TTGCTAGCATATCAGATGTTTTAGGAAAGAAGCATGAATCCTTAGCTACGGCTAAAGAGATTATGGATTCATTAAAAGGAATGTTTGGGCAACTAGAATGGTCCCTAAGA
CAAGAGGCAATCAAATACATTTACACTAAGCGTATGAAGGAGGAGACCTTTATTAGAGAACATATCCTGGACATAATGATGCACTTTAATATTGCTGAAGTAAATGGAGG
TGCCATCGATGAGGCTAATTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPKTPASNANQASRKAYNRWIKANEKARVYILASISDVLGKKHESLATAKEIMDSLKGMFGQLEWSLR
QEAIKYIYTKRMKEETFIREHILDIMMHFNIAEVNGGAIDEAN

Pay0014162 (gene) of Melon (Payzawat) v1 genome