CuGenDBv2

Gene ID	Pay0014234
Organism	Cucumis melo var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Pol protein
Genome location	chr08:8938511..8939056
RNA-Seq Expression	Pay0014234
Synteny	Pay0014234
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR016197 - Chromo-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035938.1 pol protein [Cucumis melo var. makuwa]

1.4e-75

85.96

Show/hide

Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERKGKLSPRFVGPFEILERIGP-------------------
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFER+GKLSPRFVGPFEILERIGP                   
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERKGKLSPRFVGPFEILERIGP-------------------

Query:  ---YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
           YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNK+IPLVKVLW+NHRVEEATWEREDDMRSRYPELFEE
Subjt:  ---YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

KAA0043401.1 pol protein [Cucumis melo var. makuwa]

4.8e-76

85.64

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Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERKGKLSPRFVGPFEILERIGP-------------------
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFER+GKLSPRFVGPFEILERIGP                   
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERKGKLSPRFVGPFEILERIGP-------------------

Query:  ------YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
              YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  ------YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

KAA0050751.1 pol protein [Cucumis melo var. makuwa]

6.3e-76

85.08

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Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERKGKLSPRFVGPFEILERIGP-------------------
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFER+GKLSPRFVGPFEILERIGP                   
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERKGKLSPRFVGPFEILERIGP-------------------

Query:  ------YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
              YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  ------YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

KAA0051368.1 pol protein [Cucumis melo var. makuwa]

4.8e-76

85.64

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Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERKGKLSPRFVGPFEILERIGP-------------------
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFER+GKLSPRFVGPFEILERIGP                   
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERKGKLSPRFVGPFEILERIGP-------------------

Query:  ------YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
              YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  ------YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

KAA0054731.1 pol protein [Cucumis melo var. makuwa]

4.8e-76

85.64

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Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERKGKLSPRFVGPFEILERIGP-------------------
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFER+GKLSPRFVGPFEILERIGP                   
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERKGKLSPRFVGPFEILERIGP-------------------

Query:  ------YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
              YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  ------YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SZD6 Pol protein

6.8e-76

85.96

Show/hide

Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERKGKLSPRFVGPFEILERIGP-------------------
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFER+GKLSPRFVGPFEILERIGP                   
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERKGKLSPRFVGPFEILERIGP-------------------

Query:  ---YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
           YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNK+IPLVKVLW+NHRVEEATWEREDDMRSRYPELFEE
Subjt:  ---YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

A0A5A7TPA9 Pol protein

2.3e-76

85.64

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Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERKGKLSPRFVGPFEILERIGP-------------------
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFER+GKLSPRFVGPFEILERIGP                   
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERKGKLSPRFVGPFEILERIGP-------------------

Query:  ------YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
              YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  ------YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

A0A5A7U7V9 Reverse transcriptase

2.3e-76

85.64

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Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERKGKLSPRFVGPFEILERIGP-------------------
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFER+GKLSPRFVGPFEILERIGP                   
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERKGKLSPRFVGPFEILERIGP-------------------

Query:  ------YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
              YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  ------YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

A0A5A7UB07 Pol protein

3.0e-76

85.08

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Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERKGKLSPRFVGPFEILERIGP-------------------
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFER+GKLSPRFVGPFEILERIGP                   
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERKGKLSPRFVGPFEILERIGP-------------------

Query:  ------YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
              YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  ------YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

A0A5A7UMF1 Pol protein

2.3e-76

85.64

Show/hide

Query:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERKGKLSPRFVGPFEILERIGP-------------------
        MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFER+GKLSPRFVGPFEILERIGP                   
Subjt:  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERKGKLSPRFVGPFEILERIGP-------------------

Query:  ------YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
              YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Subjt:  ------YVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATACAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGGCAGAAGAGTTATGCAGATGTGAGGCGG
AAGGACCTTGAGTTTGAGATAGGGGATAAGGTGTTCTTAAAGGTAGCACCTATGAAAGGTGTCTTGCGTTTTGAAAGAAAGGGGAAGTTGAGTCCCCGTTTTGTT
GGGCCGTTTGAGATTCTGGAGCGGATTGGCCCTTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATGTTGAA
CAACCTGTTGAGGTGCTTGCTAGAGAGGTGAAGACGTTGAGAAATAAACAAATTCCCCTAGTTAAAGTCTTATGGCGGAATCACCGGGTAGAAGAGGCTACATGG
GAGCGTGAAGACGACATGAGATCCCGTTATCCCGAACTGTTCGAGGAATAA

mRNA sequence

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Protein sequence

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MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERKGKLSPRFVGPFEILERIGPYVPDPSHVVDYEPLEIDENLSYVE
QPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

Pay0014234 (gene) of Melon (Payzawat) v1 genome